Wall clock time and date at job start Tue Mar 31 2020 11:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38250 * 120.03719 * 2 1 4 4 C 1.38102 * 119.94086 * 179.97438 * 3 2 1 5 5 C 1.38502 * 120.21399 * 359.96110 * 4 3 2 6 6 C 1.38217 * 119.84749 * 0.04618 * 5 4 3 7 7 C 1.38106 * 120.03449 * 179.97438 * 2 1 3 8 8 C 1.51364 * 109.76173 * 180.02562 * 6 5 4 9 9 H 1.08996 * 110.39189 * 136.15687 * 8 6 5 10 10 N 1.46894 * 110.30691 * 258.27462 * 8 6 5 11 11 C 1.46897 * 111.00544 * 202.45473 * 10 8 6 12 12 C 1.53045 * 109.46012 * 86.59369 * 11 10 8 13 13 C 1.53198 * 109.31163 * 181.39106 * 12 11 10 14 14 N 1.46919 * 108.77453 * 305.36185 * 13 12 11 15 15 C 1.36934 * 120.63365 * 233.58697 * 14 13 12 16 16 H 1.08005 * 119.99639 * 31.12457 * 15 14 13 17 17 C 1.38810 * 120.00232 * 211.12338 * 15 14 13 18 18 N 1.31620 * 120.00008 * 15.23201 * 17 15 14 19 19 Si 1.86803 * 120.00012 * 195.22912 * 17 15 14 20 20 H 1.48500 * 109.46585 * 90.00373 * 19 17 15 21 21 H 1.48499 * 109.47248 * 209.99932 * 19 17 15 22 22 H 1.48499 * 109.47152 * 330.00680 * 19 17 15 23 23 C 1.46932 * 118.73826 * 53.61062 * 14 13 12 24 24 C 1.53038 * 109.46416 * 206.66448 * 11 10 8 25 25 C 1.54357 * 105.16711 * 17.19658 * 8 6 5 26 26 H 1.09007 * 110.82077 * 215.22801 * 25 8 6 27 27 C 1.52993 * 110.82314 * 91.87612 * 25 8 6 28 28 C 1.51371 * 130.39300 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.47277 * 270.02047 * 1 2 3 30 30 H 1.08998 * 109.47263 * 30.01829 * 1 2 3 31 31 H 1.09000 * 109.47686 * 150.01876 * 1 2 3 32 32 H 1.07998 * 120.02995 * 359.97438 * 3 2 1 33 33 H 1.07994 * 119.89384 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.89136 * 0.04462 * 7 2 1 35 35 H 1.00903 * 111.00536 * 78.49490 * 10 8 6 36 36 H 1.09003 * 109.46099 * 326.63730 * 11 10 8 37 37 H 1.08990 * 109.49868 * 61.43890 * 12 11 10 38 38 H 1.08999 * 109.49593 * 301.33923 * 12 11 10 39 39 H 1.09003 * 109.58195 * 185.57630 * 13 12 11 40 40 H 1.08995 * 109.58819 * 65.15193 * 13 12 11 41 41 H 0.96996 * 119.99984 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58214 * 66.17792 * 23 14 13 43 43 H 1.08999 * 109.58404 * 186.60137 * 23 14 13 44 44 H 1.09000 * 109.49649 * 58.66248 * 24 11 10 45 45 H 1.09003 * 109.49376 * 298.56414 * 24 11 10 46 46 H 1.09004 * 109.47361 * 59.99840 * 27 25 8 47 47 H 1.08999 * 109.47563 * 179.97438 * 27 25 8 48 48 H 1.09005 * 109.47084 * 300.00145 * 27 25 8 49 49 H 1.08994 * 110.30493 * 43.87017 * 28 5 4 50 50 H 1.08999 * 110.38658 * 281.75758 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1989 1.1968 0.0000 4 6 3.5799 1.1945 0.0005 5 6 4.2749 -0.0035 0.0019 6 6 3.5831 -1.2001 0.0017 7 6 2.1981 -1.1956 0.0005 8 6 4.5602 -2.3562 0.0040 9 1 4.2415 -3.1214 0.7118 10 7 4.6774 -2.9272 -1.3443 11 6 5.1624 -4.3127 -1.2890 12 6 3.9760 -5.2612 -1.1024 13 6 4.4887 -6.7019 -1.0103 14 7 5.3096 -6.9882 -2.1947 15 6 5.0429 -8.0764 -2.9820 16 1 4.0284 -8.4322 -3.0857 17 6 6.0763 -8.7221 -3.6468 18 7 7.3254 -8.4948 -3.3000 19 14 5.6941 -9.9139 -5.0335 20 1 5.6573 -9.1777 -6.3227 21 1 6.7461 -10.9604 -5.0910 22 1 4.3750 -10.5508 -4.7895 23 6 6.4225 -6.0851 -2.5180 24 6 5.8882 -4.6513 -2.5931 25 6 5.9072 -1.7456 0.4460 26 1 6.7386 -2.2284 -0.0677 27 6 6.0773 -1.8443 1.9632 28 6 5.7643 -0.2735 0.0032 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6600 2.1328 -0.0004 33 1 4.1198 2.1299 0.0010 34 1 1.6569 -2.1303 0.0002 35 1 5.2730 -2.3586 -1.9274 36 1 5.8508 -4.4233 -0.4511 37 1 3.2996 -5.1694 -1.9521 38 1 3.4458 -5.0045 -0.1853 39 1 3.6432 -7.3891 -0.9768 40 1 5.0925 -6.8181 -0.1104 41 1 8.0475 -8.9463 -3.7642 42 1 7.1841 -6.1510 -1.7410 43 1 6.8531 -6.3654 -3.4793 44 1 6.7190 -3.9605 -2.7371 45 1 5.1937 -4.5652 -3.4288 46 1 6.0508 -2.8916 2.2645 47 1 7.0339 -1.4081 2.2508 48 1 5.2685 -1.3041 2.4555 49 1 6.2674 0.3846 0.7116 50 1 6.1759 -0.1371 -0.9968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611519310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:04 Heat of formation + Delta-G solvation = 15.856360 kcal Electronic energy + Delta-G solvation = -26683.406095 eV Core-core repulsion = 23288.037193 eV Total energy + Delta-G solvation = -3395.368902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48442 -39.50303 -37.90506 -35.73537 -33.74585 -32.83316 -32.04845 -31.52550 -30.56674 -29.24491 -27.16222 -26.01968 -25.66516 -23.86852 -23.06327 -22.79469 -21.29591 -20.73157 -20.63363 -18.72758 -17.25127 -16.95930 -16.55369 -16.18096 -16.01669 -15.62398 -15.55747 -15.33187 -15.17586 -14.80046 -14.55524 -14.38301 -14.21128 -13.98140 -13.81077 -13.43272 -13.15502 -13.07860 -13.01616 -13.00086 -12.83379 -12.66657 -12.55080 -12.31442 -12.08539 -11.99351 -11.93578 -11.86586 -11.78516 -11.71661 -11.54563 -11.23446 -11.14609 -10.55939 -9.65363 -9.32505 -9.20346 -8.65565 -7.88729 -5.37453 0.47388 0.54181 1.46096 1.47482 1.56467 2.50343 2.78427 3.23077 3.32863 3.40088 3.64844 3.68943 3.97754 4.03918 4.05512 4.11139 4.15979 4.19728 4.24792 4.44212 4.51290 4.55772 4.59936 4.61719 4.67713 4.69674 4.78829 4.85446 4.86449 4.90176 4.94655 4.97168 5.01995 5.03451 5.08276 5.10678 5.13854 5.24246 5.30105 5.33815 5.38841 5.39525 5.50105 5.58840 5.64316 5.71409 5.75858 5.81932 6.13497 6.21202 6.40009 6.49856 7.14721 7.84493 8.38200 9.17707 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.003017 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.268094 B = 9279.096663 C =10000.982356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.124 4.124 4 C -0.114 4.114 5 C -0.107 4.107 6 C -0.087 4.087 7 C -0.110 4.110 8 C 0.131 3.869 9 H 0.074 0.926 10 N -0.674 5.674 11 C 0.112 3.888 12 C -0.103 4.103 13 C 0.143 3.857 14 N -0.610 5.610 15 C -0.266 4.266 16 H 0.062 0.938 17 C -0.047 4.047 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.269 1.269 23 C 0.184 3.816 24 C -0.127 4.127 25 C -0.120 4.120 26 H 0.078 0.922 27 C -0.135 4.135 28 C -0.071 4.071 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.343 0.657 36 H 0.036 0.964 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.012 0.988 41 H 0.251 0.749 42 H -0.003 1.003 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.055 0.945 49 H 0.089 0.911 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.461 22.089 9.413 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.142 4.142 4 C -0.132 4.132 5 C -0.107 4.107 6 C -0.088 4.088 7 C -0.128 4.128 8 C 0.021 3.979 9 H 0.092 0.908 10 N -0.304 5.304 11 C 0.002 3.998 12 C -0.142 4.142 13 C 0.017 3.983 14 N -0.333 5.333 15 C -0.397 4.397 16 H 0.080 0.920 17 C -0.243 4.243 18 N -0.580 5.580 19 Si 0.796 3.204 20 H -0.211 1.211 21 H -0.219 1.219 22 H -0.193 1.193 23 C 0.058 3.942 24 C -0.166 4.166 25 C -0.140 4.140 26 H 0.096 0.904 27 C -0.193 4.193 28 C -0.108 4.108 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.162 0.838 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.030 0.970 41 H 0.060 0.940 42 H 0.015 0.985 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.074 0.926 49 H 0.107 0.893 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.000 21.804 9.311 25.022 hybrid contribution 1.078 -1.013 -0.587 1.592 sum -6.922 20.790 8.724 23.585 Atomic orbital electron populations 1.20790 0.89703 1.03299 1.02908 1.20089 0.97218 0.92742 0.99988 1.21194 0.93978 0.98102 1.00909 1.20848 0.94265 0.97354 1.00758 1.20756 0.96336 0.93373 1.00254 1.20451 0.93517 0.95030 0.99817 1.20652 0.93159 0.98042 1.00968 1.21059 0.92641 0.93957 0.90256 0.90789 1.60480 1.56331 1.02146 1.11412 1.21185 0.94553 0.87776 0.96251 1.21817 0.97229 0.94269 1.00911 1.21046 0.93786 0.95024 0.88474 1.44278 1.34813 1.27123 1.27135 1.19484 0.92239 1.05719 1.22217 0.91996 1.25876 0.95314 1.00011 1.03085 1.70166 0.98901 1.46537 1.42364 0.85266 0.77379 0.78317 0.79480 1.21127 1.21940 1.19344 1.20478 0.88445 0.86965 0.98312 1.22173 0.99303 0.97785 0.97341 1.22523 0.97227 0.96368 0.97915 0.90370 1.21697 1.02282 1.01730 0.93606 1.21080 0.91545 0.95783 1.02388 0.90406 0.90300 0.91788 0.83882 0.84480 0.86981 0.83756 0.94629 0.93059 0.91542 0.92936 0.97002 0.94035 0.98481 0.93192 0.91361 0.92917 0.92983 0.91133 0.92596 0.89261 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.01 71.23 0.71 -0.92 16 2 C -0.10 -2.02 5.88 -19.90 -0.12 -2.13 16 3 C -0.12 -2.21 9.70 22.24 0.22 -1.99 16 4 C -0.11 -2.11 10.04 22.30 0.22 -1.89 16 5 C -0.11 -2.25 6.14 -19.59 -0.12 -2.37 16 6 C -0.09 -2.12 5.77 -19.60 -0.11 -2.24 16 7 C -0.11 -2.64 9.70 22.30 0.22 -2.42 16 8 C 0.13 3.23 2.49 44.84 0.11 3.35 16 9 H 0.07 1.99 7.07 -2.39 -0.02 1.98 16 10 N -0.67 -18.97 6.08 -469.73 -2.85 -21.83 16 11 C 0.11 3.72 2.27 44.94 0.10 3.82 16 12 C -0.10 -3.69 5.59 30.68 0.17 -3.52 16 13 C 0.14 6.18 6.52 86.37 0.56 6.75 16 14 N -0.61 -31.62 2.98 -699.09 -2.08 -33.71 16 15 C -0.27 -15.08 9.56 84.03 0.80 -14.28 16 16 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 17 C -0.05 -2.68 4.93 84.86 0.42 -2.26 16 18 N -0.93 -55.98 11.31 21.65 0.24 -55.74 16 19 Si 0.97 45.59 29.58 68.60 2.03 47.61 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.18 9.04 5.27 86.36 0.46 9.50 16 24 C -0.13 -4.81 5.34 30.67 0.16 -4.65 16 25 C -0.12 -2.48 2.96 -9.87 -0.03 -2.51 16 26 H 0.08 1.71 8.04 -2.38 -0.02 1.69 16 27 C -0.14 -2.52 9.11 71.98 0.66 -1.86 16 28 C -0.07 -1.29 6.29 30.53 0.19 -1.10 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 31 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 32 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.11 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.34 9.13 8.05 -89.69 -0.72 8.41 16 36 H 0.04 1.22 7.72 -2.39 -0.02 1.20 16 37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.11 7.56 -2.39 -0.02 2.09 16 39 H 0.05 2.25 7.93 -2.39 -0.02 2.23 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 41 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.05 2.77 6.24 -2.39 -0.01 2.75 16 44 H 0.07 2.26 8.10 -2.39 -0.02 2.24 16 45 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.09 1.34 7.91 -2.39 -0.02 1.32 16 50 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -64.36 387.28 2.14 -62.22 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.18 Total: 22.18 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 4.63 Total: -20.74 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -4.69 Total: -111.27 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -64.36 2.14 -62.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611519310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.078 kcal (2) G-P(sol) polarization free energy of solvation -64.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds