Wall clock time and date at job start Tue Mar 31 2020 11:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38250 * 120.03407 * 2 1 4 4 C 1.38105 * 119.93679 * 180.18453 * 3 2 1 5 5 C 1.38498 * 120.21400 * 359.56663 * 4 3 2 6 6 C 1.38215 * 119.84983 * 0.43055 * 5 4 3 7 7 C 1.38104 * 120.03645 * 179.97438 * 2 1 3 8 8 C 1.51364 * 109.76141 * 179.75009 * 6 5 4 9 9 H 1.08998 * 110.30444 * 136.10689 * 8 6 5 10 10 N 1.46895 * 110.30322 * 258.26465 * 8 6 5 11 11 C 1.46906 * 110.99877 * 270.74372 * 10 8 6 12 12 C 1.53042 * 109.46221 * 275.06974 * 11 10 8 13 13 C 1.53185 * 109.31473 * 178.61354 * 12 11 10 14 14 N 1.46933 * 108.77229 * 54.63461 * 13 12 11 15 15 C 1.36938 * 120.62750 * 126.37351 * 14 13 12 16 16 H 1.08003 * 119.99918 * 207.69497 * 15 14 13 17 17 C 1.38815 * 120.00359 * 27.69284 * 15 14 13 18 18 N 1.31615 * 119.99524 * 17.35388 * 17 15 14 19 19 Si 1.86794 * 119.99978 * 197.35306 * 17 15 14 20 20 H 1.48501 * 109.47317 * 90.00388 * 19 17 15 21 21 H 1.48506 * 109.47151 * 210.00140 * 19 17 15 22 22 H 1.48497 * 109.47245 * 330.00053 * 19 17 15 23 23 C 1.46919 * 118.73927 * 306.38874 * 14 13 12 24 24 C 1.53041 * 109.45992 * 155.00095 * 11 10 8 25 25 C 1.54344 * 105.16980 * 17.18804 * 8 6 5 26 26 H 1.09005 * 110.82747 * 91.88103 * 25 8 6 27 27 C 1.52995 * 110.99258 * 215.35646 * 25 8 6 28 28 C 1.51365 * 130.39029 * 180.12328 * 5 4 3 29 29 H 1.09004 * 109.46965 * 270.02568 * 1 2 3 30 30 H 1.08999 * 109.46853 * 30.02277 * 1 2 3 31 31 H 1.09001 * 109.46755 * 150.02726 * 1 2 3 32 32 H 1.08003 * 120.02939 * 359.97438 * 3 2 1 33 33 H 1.08007 * 119.89209 * 179.71073 * 4 3 2 34 34 H 1.08003 * 119.89013 * 0.02562 * 7 2 1 35 35 H 1.00894 * 111.00500 * 34.69854 * 10 8 6 36 36 H 1.09000 * 109.45872 * 35.03102 * 11 10 8 37 37 H 1.09004 * 109.49444 * 298.56985 * 12 11 10 38 38 H 1.08998 * 109.49416 * 58.65752 * 12 11 10 39 39 H 1.09002 * 109.58884 * 294.85079 * 13 12 11 40 40 H 1.09001 * 109.58918 * 174.41989 * 13 12 11 41 41 H 0.97007 * 119.99878 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.59342 * 293.82510 * 23 14 13 43 43 H 1.09005 * 109.58644 * 173.39619 * 23 14 13 44 44 H 1.08999 * 109.49797 * 301.34214 * 24 11 10 45 45 H 1.09001 * 109.49443 * 61.40356 * 24 11 10 46 46 H 1.09000 * 109.47612 * 174.52400 * 27 25 8 47 47 H 1.09007 * 109.47242 * 294.52256 * 27 25 8 48 48 H 1.08998 * 109.47342 * 54.52028 * 27 25 8 49 49 H 1.08997 * 110.30617 * 282.02537 * 28 5 4 50 50 H 1.09008 * 110.30028 * 44.17957 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1969 0.0000 4 6 3.5800 1.1945 -0.0039 5 6 4.2750 -0.0035 0.0013 6 6 3.5832 -1.2001 0.0014 7 6 2.1983 -1.1956 0.0005 8 6 4.5603 -2.3561 0.0013 9 1 4.2420 -3.1205 0.7101 10 7 4.6753 -2.9262 -1.3476 11 6 3.6793 -3.9854 -1.5580 12 6 4.2234 -5.3111 -1.0207 13 6 3.1688 -6.4057 -1.2104 14 7 2.7762 -6.4439 -2.6258 15 6 2.8317 -7.6147 -3.3338 16 1 2.9859 -7.5927 -4.4026 17 6 2.6899 -8.8299 -2.6780 18 7 2.1713 -8.8685 -1.4690 19 14 3.2351 -10.4102 -3.5115 20 1 4.6572 -10.6799 -3.1795 21 1 2.3934 -11.5371 -3.0349 22 1 3.0881 -10.2702 -4.9825 23 6 2.3233 -5.2020 -3.2670 24 6 3.3874 -4.1208 -3.0543 25 6 5.9080 -1.7458 0.4414 26 1 6.0311 -1.8169 1.5221 27 6 7.0764 -2.4182 -0.2821 28 6 5.7643 -0.2734 0.0012 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8903 -0.5134 32 1 1.6600 2.1328 -0.0004 33 1 4.1199 2.1300 -0.0086 34 1 1.6571 -2.1302 0.0005 35 1 4.5939 -2.2083 -2.0518 36 1 2.7604 -3.7297 -1.0305 37 1 5.1289 -5.5799 -1.5648 38 1 4.4531 -5.2069 0.0397 39 1 2.2968 -6.1837 -0.5952 40 1 3.5867 -7.3700 -0.9210 41 1 2.0718 -9.7178 -1.0107 42 1 1.3824 -4.8817 -2.8196 43 1 2.1834 -5.3720 -4.3346 44 1 3.0221 -3.1696 -3.4412 45 1 4.3009 -4.4004 -3.5792 46 1 8.0044 -1.9059 -0.0279 47 1 7.1418 -3.4620 0.0251 48 1 6.9157 -2.3657 -1.3589 49 1 6.1736 -0.1362 -0.9996 50 1 6.2679 0.3841 0.7101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611519311.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:08 Heat of formation + Delta-G solvation = 34.176228 kcal Electronic energy + Delta-G solvation = -27047.113266 eV Core-core repulsion = 23652.538773 eV Total energy + Delta-G solvation = -3394.574492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.58355 -37.97264 -36.75413 -34.23696 -32.38621 -31.70463 -30.86545 -29.87719 -29.05865 -28.21695 -25.87021 -24.89187 -24.26033 -22.29556 -21.85211 -21.38904 -20.45456 -19.40404 -18.96994 -16.76402 -16.31536 -15.89154 -15.27932 -15.11710 -14.73617 -14.30012 -14.10005 -13.88907 -13.79824 -13.51451 -13.41196 -13.12858 -12.97622 -12.77681 -12.48011 -12.30613 -12.21934 -12.14583 -11.70353 -11.52711 -11.29155 -11.07916 -11.01616 -10.93971 -10.76287 -10.70748 -10.69416 -10.50169 -10.16295 -10.12995 -9.86868 -9.50814 -9.47371 -8.91285 -8.50981 -8.42703 -8.01379 -6.63915 -5.75128 -3.16809 1.26401 1.33195 3.40697 3.47500 3.48516 3.63633 4.26477 4.41015 4.53129 4.64616 4.78436 4.93233 4.96581 5.00822 5.22564 5.35184 5.37407 5.41055 5.47447 5.48852 5.53064 5.55900 5.63772 5.68845 5.72791 5.77144 5.81608 5.89833 5.96950 6.01708 6.07274 6.16563 6.19251 6.31356 6.34503 6.38068 6.46454 6.53995 6.59870 6.62517 6.68078 6.69965 6.80540 6.82969 6.96083 7.02923 7.41491 7.45281 7.65720 7.73454 7.83910 8.49138 9.25496 9.89146 10.45908 11.33410 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.003470 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.473686 B = 8066.662897 C = 9043.568237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.095 4.095 6 C -0.121 4.121 7 C -0.097 4.097 8 C 0.128 3.872 9 H 0.085 0.915 10 N -0.664 5.664 11 C 0.096 3.904 12 C -0.123 4.123 13 C 0.171 3.829 14 N -0.591 5.591 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.149 3.851 24 C -0.132 4.132 25 C -0.081 4.081 26 H 0.076 0.924 27 C -0.123 4.123 28 C -0.078 4.078 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.335 0.665 36 H 0.036 0.964 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.013 0.987 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.014 0.986 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.040 0.960 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.755 20.435 4.708 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.128 4.128 5 C -0.096 4.096 6 C -0.123 4.123 7 C -0.115 4.115 8 C 0.018 3.982 9 H 0.103 0.897 10 N -0.293 5.293 11 C -0.013 4.013 12 C -0.163 4.163 13 C 0.045 3.955 14 N -0.314 5.314 15 C -0.380 4.380 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.022 3.978 24 C -0.172 4.172 25 C -0.100 4.100 26 H 0.094 0.906 27 C -0.181 4.181 28 C -0.115 4.115 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.153 0.847 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.222 19.801 4.950 20.842 hybrid contribution -0.731 -0.174 -0.369 0.837 sum 3.491 19.626 4.582 20.454 Atomic orbital electron populations 1.20776 0.91155 1.02821 1.02250 1.19809 0.96011 0.92939 1.00285 1.20882 0.93851 0.97377 1.01694 1.20573 0.93853 0.96941 1.01477 1.20623 0.96145 0.93142 0.99650 1.21405 0.93928 0.96941 0.99980 1.20636 0.93002 0.97700 1.00192 1.21087 0.91662 0.92739 0.92731 0.89662 1.60929 1.52190 1.14093 1.02045 1.21507 0.91863 0.91673 0.96237 1.22194 1.00795 0.94757 0.98537 1.20796 0.93108 0.97005 0.84621 1.44055 1.74943 1.04121 1.08266 1.19206 1.43079 0.83511 0.92243 0.91726 1.25018 0.99511 0.97885 0.97251 1.70041 1.45839 1.24854 1.14062 0.86296 0.78279 0.83289 0.78952 1.21446 1.21831 1.20471 1.20839 0.93118 0.86988 0.96872 1.22193 1.01209 0.98722 0.95038 1.21851 0.95053 0.93405 0.99698 0.90573 1.21504 0.94832 1.00042 1.01673 1.21172 0.91410 0.96981 1.01953 0.91287 0.91687 0.91354 0.86228 0.86556 0.86313 0.84720 0.94632 0.92122 0.93794 0.96881 0.89412 0.93708 0.96810 0.92791 0.93711 0.91573 0.94072 0.92378 0.91095 0.90146 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.09 -1.05 5.88 -104.67 -0.62 -1.66 16 3 C -0.12 -1.27 9.70 -39.63 -0.38 -1.66 16 4 C -0.11 -1.18 10.04 -39.53 -0.40 -1.58 16 5 C -0.09 -1.11 6.14 -104.21 -0.64 -1.75 16 6 C -0.12 -1.56 5.40 -104.21 -0.56 -2.12 16 7 C -0.10 -1.27 9.40 -39.54 -0.37 -1.64 16 8 C 0.13 1.67 2.80 -67.84 -0.19 1.48 16 9 H 0.09 1.23 7.19 -51.93 -0.37 0.86 16 10 N -0.66 -9.35 4.36 -99.82 -0.44 -9.78 16 11 C 0.10 1.62 2.30 -67.67 -0.16 1.47 16 12 C -0.12 -2.41 5.57 -26.61 -0.15 -2.55 16 13 C 0.17 4.13 5.31 -3.71 -0.02 4.11 16 14 N -0.59 -14.96 2.99 -172.32 -0.52 -15.48 16 15 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 16 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 18 N -0.90 -26.44 11.19 55.49 0.62 -25.82 16 19 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.15 3.17 6.52 -3.72 -0.02 3.14 16 24 C -0.13 -2.32 5.36 -26.61 -0.14 -2.47 16 25 C -0.08 -0.89 3.62 -89.21 -0.32 -1.22 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 27 C -0.12 -1.36 8.67 37.16 0.32 -1.04 16 28 C -0.08 -0.79 6.32 -26.85 -0.17 -0.96 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.12 1.62 7.39 -52.48 -0.39 1.23 16 35 H 0.33 4.60 8.04 -39.29 -0.32 4.28 16 36 H 0.04 0.64 6.82 -51.93 -0.35 0.28 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.04 0.80 7.47 -51.93 -0.39 0.42 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 1.13 7.93 -51.93 -0.41 0.71 16 44 H 0.04 0.70 8.10 -51.93 -0.42 0.27 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.84 7.15 -51.93 -0.37 0.47 16 49 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 50 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -29.15 382.79 -12.07 -41.22 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.79 Total: 3.51 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -3.69 Total: -16.29 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.33 Total: -51.08 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.15 -12.07 -41.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611519311.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.393 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds