Wall clock time and date at job start Tue Mar 31 2020 11:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38256 * 119.99656 * 2 1 4 4 C 1.38221 * 119.99797 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.38217 * 120.00261 * 359.76839 * 5 4 3 7 7 C 1.38203 * 119.99857 * 180.02562 * 2 1 3 8 8 C 1.50709 * 120.00375 * 359.97438 * 7 2 1 9 9 C 1.53777 * 113.61643 * 119.99946 * 8 7 2 10 10 C 1.53775 * 87.08222 * 140.06548 * 9 8 7 11 11 N 1.46906 * 113.61446 * 89.11545 * 10 9 8 12 12 C 1.46897 * 111.00190 * 156.53209 * 11 10 9 13 13 C 1.53034 * 109.46001 * 155.00168 * 12 11 10 14 14 C 1.53192 * 109.31274 * 181.38295 * 13 12 11 15 15 N 1.46923 * 108.77570 * 305.36845 * 14 13 12 16 16 C 1.36943 * 120.62670 * 233.58733 * 15 14 13 17 17 H 1.08000 * 119.99614 * 152.46214 * 16 15 14 18 18 C 1.38804 * 120.00074 * 332.45722 * 16 15 14 19 19 N 1.31623 * 119.99979 * 342.37456 * 18 16 15 20 20 Si 1.86801 * 120.00307 * 162.64449 * 18 16 15 21 21 H 1.48505 * 109.46883 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47313 * 120.00170 * 20 18 16 23 23 H 1.48497 * 109.47063 * 240.00359 * 20 18 16 24 24 C 1.46921 * 118.74387 * 53.85427 * 15 14 13 25 25 C 1.53045 * 109.45505 * 275.06853 * 12 11 10 26 26 C 1.53787 * 87.17374 * 334.52608 * 10 9 8 27 27 H 1.08995 * 109.47011 * 269.98049 * 1 2 3 28 28 H 1.09001 * 109.46648 * 29.97897 * 1 2 3 29 29 H 1.09000 * 109.46813 * 149.97583 * 1 2 3 30 30 H 1.07996 * 120.00720 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.00405 * 179.97438 * 4 3 2 32 32 H 1.07998 * 120.00187 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.00744 * 180.25469 * 6 5 4 34 34 H 1.08999 * 112.84501 * 348.80118 * 8 7 2 35 35 H 1.08998 * 113.61233 * 25.51373 * 9 8 7 36 36 H 1.09002 * 113.68959 * 254.63131 * 9 8 7 37 37 H 1.08998 * 113.61975 * 219.93264 * 10 9 8 38 38 H 1.00903 * 110.99376 * 280.48605 * 11 10 9 39 39 H 1.08996 * 109.45833 * 35.02519 * 12 11 10 40 40 H 1.09001 * 109.50018 * 61.43054 * 13 12 11 41 41 H 1.08998 * 109.49937 * 301.33388 * 13 12 11 42 42 H 1.08999 * 109.59072 * 185.57621 * 14 13 12 43 43 H 1.08998 * 109.70151 * 65.21737 * 14 13 12 44 44 H 0.96997 * 119.99747 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.58331 * 65.92809 * 24 15 14 46 46 H 1.09003 * 109.59217 * 186.35836 * 24 15 14 47 47 H 1.09002 * 109.49672 * 298.56573 * 25 12 11 48 48 H 1.09002 * 109.49925 * 58.62911 * 25 12 11 49 49 H 1.08997 * 113.61190 * 140.01915 * 26 10 9 50 50 H 1.08999 * 113.61145 * 270.92316 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1970 0.0048 7 6 2.1980 -1.1969 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 6 1.7462 -3.3876 -1.2211 10 6 1.7268 -4.5860 -0.2578 11 7 0.3956 -5.1840 -0.0890 12 6 0.4983 -6.5820 0.3504 13 6 -0.7787 -6.9773 1.0954 14 6 -0.6539 -8.4244 1.5821 15 7 -0.3347 -9.2836 0.4338 16 6 -1.1002 -10.3834 0.1513 17 1 -1.1729 -10.7442 -0.8641 18 6 -1.7825 -11.0344 1.1697 19 7 -1.4398 -10.8336 2.4246 20 14 -3.1824 -12.2011 0.7592 21 1 -3.3640 -12.2574 -0.7137 22 1 -2.8619 -13.5580 1.2702 23 1 -4.4338 -11.7157 1.3944 24 6 0.8249 -8.9440 -0.4020 25 6 0.6803 -7.4878 -0.8697 26 6 2.1041 -3.5977 0.8584 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6583 2.1327 -0.0004 31 1 4.1205 2.1327 0.0001 32 1 5.3517 0.0000 0.0005 33 1 4.1206 -2.1323 0.0090 34 1 0.3797 -2.3760 0.1950 35 1 2.7237 -3.2002 -1.6655 36 1 0.9430 -3.4063 -1.9577 37 1 2.4998 -5.3259 -0.4655 38 1 -0.1648 -4.6434 0.5527 39 1 1.3552 -6.6917 1.0150 40 1 -1.6330 -6.8916 0.4240 41 1 -0.9201 -6.3167 1.9509 42 1 -1.5969 -8.7433 2.0261 43 1 0.1416 -8.4954 2.3238 44 1 -1.9164 -11.2888 3.1363 45 1 1.7397 -9.0544 0.1802 46 1 0.8579 -9.6056 -1.2676 47 1 -0.1878 -7.3973 -1.5227 48 1 1.5770 -7.1902 -1.4133 49 1 1.5888 -3.7854 1.8003 50 1 3.1793 -3.4678 0.9815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611980344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:26 Heat of formation + Delta-G solvation = 43.185793 kcal Electronic energy + Delta-G solvation = -25974.948007 eV Core-core repulsion = 22580.764198 eV Total energy + Delta-G solvation = -3394.183808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31798 -39.73899 -38.64027 -35.73403 -33.81990 -33.44227 -31.96042 -31.42478 -30.11307 -27.78658 -26.63429 -26.53215 -25.61396 -23.89196 -23.25042 -22.64153 -21.68340 -20.68907 -19.66409 -18.71428 -17.77138 -16.88433 -16.64067 -16.45696 -15.94619 -15.69145 -15.65834 -15.31149 -14.97416 -14.83200 -14.69196 -14.45162 -14.22985 -13.90998 -13.75165 -13.54872 -13.31430 -13.10681 -13.06611 -13.00991 -12.81356 -12.61710 -12.51564 -12.35797 -12.07420 -11.96999 -11.96227 -11.79365 -11.53882 -11.41235 -11.24132 -11.09275 -10.89154 -10.53973 -9.63972 -9.38656 -9.25212 -8.69486 -7.87811 -5.32407 0.48667 0.52824 1.45901 1.47770 1.58656 2.51501 2.85424 3.09511 3.29006 3.64493 3.69758 3.80295 3.86188 4.03773 4.05442 4.09578 4.11896 4.21341 4.24867 4.34561 4.47634 4.49273 4.55417 4.65700 4.67901 4.70756 4.80187 4.83868 4.86091 4.88220 4.89959 4.99948 5.00871 5.06200 5.10287 5.18946 5.20733 5.25845 5.27213 5.36562 5.39177 5.42773 5.53839 5.65261 5.66539 5.67621 5.74806 5.85804 6.19058 6.23767 6.39409 6.55231 7.14816 7.86303 8.37921 9.18788 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.034525 B = 0.002281 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.821331 B =12273.260664 C =12553.714027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.098 4.098 3 C -0.131 4.131 4 C -0.131 4.131 5 C -0.134 4.134 6 C -0.125 4.125 7 C -0.080 4.080 8 C -0.067 4.067 9 C -0.112 4.112 10 C 0.065 3.935 11 N -0.665 5.665 12 C 0.110 3.890 13 C -0.126 4.126 14 C 0.179 3.821 15 N -0.611 5.611 16 C -0.260 4.260 17 H 0.065 0.935 18 C -0.053 4.053 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.289 1.289 24 C 0.140 3.860 25 C -0.102 4.102 26 C -0.156 4.156 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.344 0.656 39 H 0.032 0.968 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.055 0.945 43 H -0.006 1.006 44 H 0.250 0.750 45 H 0.012 0.988 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.062 0.938 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.015 25.216 -5.064 27.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.143 4.143 7 C -0.080 4.080 8 C -0.085 4.085 9 C -0.150 4.150 10 C -0.046 4.046 11 N -0.295 5.295 12 C 0.000 4.000 13 C -0.165 4.165 14 C 0.053 3.947 15 N -0.335 5.335 16 C -0.390 4.390 17 H 0.083 0.917 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.795 3.205 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.216 1.216 24 C 0.014 3.986 25 C -0.142 4.142 26 C -0.195 4.195 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.164 0.836 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.012 0.988 44 H 0.059 0.941 45 H 0.030 0.970 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.874 24.967 -5.620 27.086 hybrid contribution -0.357 -0.842 1.192 1.502 sum 8.517 24.124 -4.428 25.964 Atomic orbital electron populations 1.20874 0.90497 1.03347 1.02719 1.20076 0.96938 0.92873 0.99935 1.21295 0.94745 0.97870 1.00972 1.21409 0.94457 0.98810 1.00207 1.21389 1.00776 0.92476 1.00595 1.21196 0.93785 0.98778 1.00527 1.19766 0.93847 0.94283 1.00080 1.21557 0.99390 0.90029 0.97490 1.23053 1.02228 0.93741 0.95989 1.22644 0.90498 0.94947 0.96537 1.60384 1.13486 1.01883 1.53786 1.21202 0.96112 0.87913 0.94758 1.22148 0.97661 0.97467 0.99260 1.20545 0.98511 0.87585 0.88059 1.44359 1.29851 1.27529 1.31719 1.19548 1.22176 1.04760 0.92559 0.91700 1.25792 1.03396 1.00276 0.95340 1.70196 1.41915 1.46843 0.99267 0.85215 0.79233 0.78055 0.78004 1.19149 1.21914 1.21551 1.21164 0.88678 0.94992 0.93750 1.21888 1.01196 0.94073 0.97016 1.23797 1.01807 0.96394 0.97476 0.90859 0.90641 0.91208 0.84744 0.84399 0.84635 0.85437 0.88162 0.89309 0.91195 0.90392 0.83625 0.94996 0.92664 0.91538 0.92701 0.98750 0.94110 0.97001 0.92805 0.92853 0.91172 0.91958 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.33 71.24 0.66 -1.04 16 2 C -0.10 -1.74 5.88 -19.87 -0.12 -1.85 16 3 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 4 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 5 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 6 C -0.13 -2.18 8.63 22.27 0.19 -1.99 16 7 C -0.08 -1.48 5.29 -19.86 -0.11 -1.59 16 8 C -0.07 -1.21 3.28 -10.92 -0.04 -1.25 16 9 C -0.11 -2.15 7.35 31.12 0.23 -1.92 16 10 C 0.06 1.41 3.95 45.44 0.18 1.59 16 11 N -0.66 -17.23 6.37 -466.64 -2.97 -20.20 16 12 C 0.11 3.56 2.31 44.94 0.10 3.66 16 13 C -0.13 -4.72 5.36 30.67 0.16 -4.56 16 14 C 0.18 8.78 5.31 86.36 0.46 9.24 16 15 N -0.61 -31.43 2.99 -698.28 -2.09 -33.52 16 16 C -0.26 -14.63 9.59 84.03 0.81 -13.82 16 17 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16 18 C -0.05 -3.01 4.90 84.86 0.42 -2.59 16 19 N -0.94 -56.07 11.19 21.65 0.24 -55.83 16 20 Si 0.97 45.50 29.59 68.60 2.03 47.53 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 C 0.14 5.97 6.54 86.51 0.57 6.53 16 25 C -0.10 -3.55 5.59 30.82 0.17 -3.38 16 26 C -0.16 -2.98 7.00 31.21 0.22 -2.77 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.89 8.09 -2.39 -0.02 0.88 16 29 H 0.07 1.04 6.34 -2.39 -0.02 1.03 16 30 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.13 1.97 6.65 -2.91 -0.02 1.95 16 34 H 0.10 1.83 5.98 -2.39 -0.01 1.81 16 35 H 0.09 1.57 7.73 -2.39 -0.02 1.55 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.81 7.47 -2.39 -0.02 1.79 16 38 H 0.34 8.28 7.69 -89.69 -0.69 7.59 16 39 H 0.03 1.08 7.85 -2.39 -0.02 1.07 16 40 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.07 2.18 8.10 -2.39 -0.02 2.17 16 42 H 0.05 3.04 6.03 -2.39 -0.01 3.03 16 43 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 45 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.05 2.25 7.93 -2.39 -0.02 2.23 16 47 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.07 2.11 7.68 -2.39 -0.02 2.10 16 49 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 50 H 0.09 1.64 6.31 -2.39 -0.02 1.62 16 Total: -1.00 -63.83 382.75 2.01 -61.82 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.22 Total: 21.41 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 4.58 Total: -21.20 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -4.82 Total: -109.55 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -63.83 2.01 -61.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611980344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.003 kcal (2) G-P(sol) polarization free energy of solvation -63.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds