Wall clock time and date at job start Tue Mar 31 2020 11:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 C 1.53007 * 109.47208 * 65.00245 * 3 2 1 5 5 C 1.52993 * 109.47202 * 185.04583 * 4 3 2 6 6 C 1.52996 * 109.47485 * 185.00100 * 3 2 1 7 7 N 1.46900 * 109.46908 * 65.28513 * 6 3 2 8 8 C 1.46896 * 111.00082 * 72.85352 * 7 6 3 9 9 C 1.50704 * 109.47533 * 195.68250 * 8 7 6 10 10 H 1.08006 * 119.99321 * 4.94021 * 9 8 7 11 11 C 1.37872 * 120.00455 * 184.93896 * 9 8 7 12 12 N 1.31515 * 119.99488 * 5.15233 * 11 9 8 13 13 Si 1.86796 * 120.00260 * 185.15536 * 11 9 8 14 14 H 1.48503 * 109.46905 * 64.99631 * 13 11 9 15 15 H 1.48497 * 109.47027 * 184.99571 * 13 11 9 16 16 H 1.48496 * 109.47037 * 304.99906 * 13 11 9 17 17 C 1.46904 * 111.00034 * 196.80984 * 7 6 3 18 18 C 1.50701 * 109.47374 * 65.79423 * 17 7 6 19 19 C 1.38379 * 119.84977 * 254.70904 * 18 17 7 20 20 C 1.37922 * 120.15539 * 179.76533 * 19 18 17 21 21 C 1.39660 * 119.84240 * 0.51033 * 20 19 18 22 22 C 1.43194 * 120.14944 * 179.72439 * 21 20 19 23 23 N 7.32301 * 131.21239 * 148.84009 * 2 1 3 24 24 C 1.39610 * 119.69672 * 359.74025 * 21 20 19 25 25 C 1.37968 * 119.85012 * 0.02562 * 24 21 20 26 26 C 1.50695 * 119.92717 * 179.97438 * 25 24 21 27 27 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47222 * 299.99951 * 1 2 3 29 29 H 1.09002 * 109.47270 * 59.99551 * 1 2 3 30 30 H 1.08994 * 109.46895 * 240.00612 * 2 1 3 31 31 H 1.08990 * 109.47100 * 120.00082 * 2 1 3 32 32 H 1.08998 * 109.47340 * 305.00162 * 3 2 1 33 33 H 1.08998 * 109.46739 * 305.04596 * 4 3 2 34 34 H 1.09000 * 109.47137 * 65.04434 * 4 3 2 35 35 H 1.08998 * 109.47200 * 183.35799 * 5 4 3 36 36 H 1.09001 * 109.47622 * 303.36184 * 5 4 3 37 37 H 1.09002 * 109.47353 * 63.36086 * 5 4 3 38 38 H 1.09008 * 109.46973 * 305.28939 * 6 3 2 39 39 H 1.08994 * 109.47838 * 185.28823 * 6 3 2 40 40 H 1.08995 * 109.46962 * 315.68398 * 8 7 6 41 41 H 1.09001 * 109.47226 * 75.68235 * 8 7 6 42 42 H 0.97007 * 120.00012 * 180.02562 * 12 11 9 43 43 H 1.09002 * 109.46912 * 185.80083 * 17 7 6 44 44 H 1.09001 * 109.46828 * 305.79754 * 17 7 6 45 45 H 1.08002 * 119.92430 * 0.02562 * 19 18 17 46 46 H 1.07999 * 120.08433 * 180.25159 * 20 19 18 47 47 H 1.08005 * 120.07512 * 180.02562 * 24 21 20 48 48 H 1.09004 * 109.47520 * 272.87091 * 26 25 24 49 49 H 1.09000 * 109.47207 * 32.86492 * 26 25 24 50 50 H 1.08997 * 109.47528 * 152.86740 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3074 5 6 2.0343 3.6026 1.2555 6 6 3.5647 1.4444 -0.1257 7 7 3.9487 0.9028 -1.4362 8 6 3.6525 1.8613 -2.5092 9 6 3.6898 1.1537 -3.8393 10 1 3.8320 0.0837 -3.8779 11 6 3.5422 1.8721 -5.0068 12 7 3.4707 3.1846 -4.9665 13 14 3.4439 0.9811 -6.6457 14 1 2.2114 0.1538 -6.6861 15 1 3.4091 1.9753 -7.7482 16 1 4.6329 0.1060 -6.8054 17 6 5.3659 0.5166 -1.4515 18 6 5.5832 -0.6350 -0.5040 19 6 6.2029 -0.4173 0.7139 20 6 6.4006 -1.4658 1.5879 21 6 5.9831 -2.7515 1.2367 22 6 6.1904 -3.8459 2.1366 23 7 6.3548 -4.7141 2.8505 24 6 5.3632 -2.9648 0.0041 25 6 5.1674 -1.9059 -0.8585 26 6 4.4990 -2.1343 -2.1896 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6053 1.9816 -0.8418 33 1 0.5564 2.0463 1.4406 34 1 2.1414 1.6425 2.1426 35 1 1.8003 4.0760 2.2090 36 1 3.1041 3.6833 1.0627 37 1 1.4829 4.1003 0.4578 38 1 3.9951 0.8270 0.6628 39 1 3.9359 2.4649 -0.0315 40 1 2.6618 2.2877 -2.3522 41 1 4.3965 2.6578 -2.5005 42 1 3.3665 3.6902 -5.7879 43 1 5.6497 0.2159 -2.4601 44 1 5.9767 1.3638 -1.1396 45 1 6.5289 0.5766 0.9826 46 1 6.8808 -1.2939 2.5399 47 1 5.0376 -3.9564 -0.2736 48 1 5.2481 -2.4195 -2.9283 49 1 3.7615 -2.9312 -2.0939 50 1 4.0038 -1.2176 -2.5096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614401958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:06 Heat of formation + Delta-G solvation = 28.875485 kcal Electronic energy + Delta-G solvation = -27038.352769 eV Core-core repulsion = 23643.548419 eV Total energy + Delta-G solvation = -3394.804350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.83372 -37.89372 -36.56188 -35.20952 -32.84502 -32.53836 -31.42167 -31.39126 -28.18194 -27.53839 -26.43723 -25.25680 -23.34966 -22.34981 -22.17051 -21.75712 -20.47227 -18.95727 -18.16142 -16.62811 -15.75877 -15.68851 -14.95512 -14.69460 -14.33947 -14.25144 -14.17302 -14.10393 -13.73665 -13.45170 -13.24808 -13.10644 -12.97764 -12.92817 -12.63139 -12.24791 -12.21002 -11.91095 -11.68647 -11.63383 -11.53386 -11.42201 -11.28247 -11.04834 -10.95417 -10.83580 -10.75158 -10.64851 -10.52334 -10.13541 -9.95682 -9.83424 -9.64613 -9.23434 -8.78240 -8.49561 -8.42867 -7.27808 -6.07009 -4.08178 0.84067 1.42010 2.62239 2.96012 3.29581 3.35208 3.36930 3.88286 3.90022 4.38438 4.80738 4.90133 4.94605 5.07915 5.18351 5.24212 5.29101 5.35639 5.43163 5.49757 5.57456 5.68127 5.72794 5.79233 5.85049 5.92555 5.99239 6.02522 6.09518 6.13029 6.15772 6.17520 6.21113 6.25077 6.31106 6.36483 6.37380 6.44991 6.49818 6.55749 6.66327 6.72323 6.87744 6.93057 6.95180 7.02763 7.22352 7.34250 7.44223 7.79281 8.05977 8.11844 8.48123 8.99705 9.56359 11.03102 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.009750 B = 0.004846 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.988411 B = 5776.688827 C = 7349.296167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.081 4.081 4 C -0.119 4.119 5 C -0.154 4.154 6 C 0.056 3.944 7 N -0.524 5.524 8 C 0.192 3.808 9 C -0.508 4.508 10 H 0.066 0.934 11 C 0.059 3.941 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.276 1.276 17 C 0.092 3.908 18 C -0.032 4.032 19 C -0.119 4.119 20 C -0.080 4.080 21 C -0.044 4.044 22 C 0.264 3.736 23 N -0.436 5.436 24 C -0.076 4.076 25 C -0.054 4.054 26 C -0.134 4.134 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.027 0.973 40 H 0.031 0.969 41 H -0.004 1.004 42 H 0.261 0.739 43 H 0.099 0.901 44 H 0.031 0.969 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.065 0.935 49 H 0.059 0.941 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 -4.530 10.535 11.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.100 4.100 4 C -0.157 4.157 5 C -0.211 4.211 6 C -0.072 4.072 7 N -0.248 5.248 8 C 0.067 3.933 9 C -0.547 4.547 10 H 0.084 0.916 11 C -0.143 4.143 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.036 4.036 18 C -0.034 4.034 19 C -0.137 4.137 20 C -0.101 4.101 21 C -0.048 4.048 22 C -0.050 4.050 23 N -0.112 5.112 24 C -0.096 4.096 25 C -0.054 4.054 26 C -0.191 4.191 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.014 0.986 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.049 0.951 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.145 0.855 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.874 -6.121 11.421 12.987 hybrid contribution 0.369 0.730 -0.979 1.275 sum 1.244 -5.391 10.443 11.818 Atomic orbital electron populations 1.21836 0.97219 1.00634 1.01243 1.21400 0.94262 0.96514 1.02297 1.21165 0.95421 0.96280 0.97096 1.21602 1.00720 0.95426 0.97916 1.21833 1.01885 0.96551 1.00841 1.22172 0.95347 0.97232 0.92477 1.62095 1.15429 1.44007 1.03293 1.19785 0.96181 0.89428 0.87877 1.21149 1.49260 0.94360 0.89930 0.91583 1.24952 0.95536 0.94703 0.99118 1.69948 1.50264 1.05322 1.28058 0.86666 0.78717 0.79348 0.83328 1.20251 1.21536 1.20182 1.21059 0.90849 0.92851 0.98843 1.20291 0.93647 0.95126 0.94293 1.21020 1.00181 0.98828 0.93687 1.20996 0.98709 0.90826 0.99540 1.15917 1.06598 0.89016 0.93233 1.25859 0.93123 0.93003 0.93048 1.81217 1.09600 1.10415 1.09964 1.21054 0.97339 0.99386 0.91870 1.19744 0.97031 0.91697 0.96941 1.21144 0.99918 1.05513 0.92486 0.93638 0.93482 0.92794 0.90017 0.93486 0.90508 0.92140 0.92731 0.93616 0.92492 0.92733 0.92141 0.95535 0.95089 0.98625 0.92912 0.88315 0.95084 0.85445 0.85674 0.85523 0.91622 0.92238 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.16 0.36 -1.62 16 2 C -0.11 -1.53 5.35 -26.73 -0.14 -1.67 16 3 C -0.08 -1.20 1.88 -90.62 -0.17 -1.37 16 4 C -0.12 -1.50 5.27 -26.73 -0.14 -1.64 16 5 C -0.15 -1.92 9.75 37.15 0.36 -1.56 16 6 C 0.06 0.87 4.10 -3.83 -0.02 0.85 16 7 N -0.52 -9.25 2.75 -237.52 -0.65 -9.90 16 8 C 0.19 4.35 4.58 -4.98 -0.02 4.32 16 9 C -0.51 -12.56 8.35 -34.44 -0.29 -12.85 16 10 H 0.07 1.57 5.83 -52.48 -0.31 1.26 16 11 C 0.06 1.53 5.45 -17.82 -0.10 1.43 16 12 N -0.90 -24.94 13.28 55.43 0.74 -24.20 16 13 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 C 0.09 1.48 4.06 -4.97 -0.02 1.46 16 18 C -0.03 -0.43 4.47 -104.53 -0.47 -0.90 16 19 C -0.12 -1.36 8.64 -39.65 -0.34 -1.71 16 20 C -0.08 -0.85 9.76 -39.17 -0.38 -1.24 16 21 C -0.04 -0.51 5.73 -106.93 -0.61 -1.12 16 22 C 0.26 3.34 15.33 -22.48 -0.34 3.00 16 23 N -0.44 -6.33 18.54 41.84 0.78 -5.56 16 24 C -0.08 -0.89 9.42 -39.17 -0.37 -1.26 16 25 C -0.05 -0.70 5.87 -104.69 -0.61 -1.31 16 26 C -0.13 -1.83 9.38 36.00 0.34 -1.50 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.55 6.46 -51.93 -0.34 0.22 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.33 7.63 -51.93 -0.40 0.93 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.35 6.46 -51.93 -0.34 1.02 16 33 H 0.06 0.73 6.34 -51.93 -0.33 0.40 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.74 6.31 -51.93 -0.33 0.41 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.87 6.10 -51.92 -0.32 0.55 16 39 H 0.03 0.43 6.17 -51.93 -0.32 0.11 16 40 H 0.03 0.76 6.29 -51.93 -0.33 0.44 16 41 H 0.00 -0.10 8.04 -51.93 -0.42 -0.52 16 42 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.10 1.76 6.56 -51.93 -0.34 1.42 16 44 H 0.03 0.50 7.92 -51.93 -0.41 0.09 16 45 H 0.13 1.30 7.99 -52.49 -0.42 0.88 16 46 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 50 H 0.12 1.92 4.06 -51.93 -0.21 1.71 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -26.58 394.20 -9.35 -35.92 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.15 Total: 1.27 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -2.97 Total: -18.67 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.86 Total: -39.66 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -26.58 -9.35 -35.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614401958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.800 kcal (2) G-P(sol) polarization free energy of solvation -26.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds