Wall clock time and date at job start Tue Mar 31 2020 11:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 C 1.53007 * 109.47208 * 65.00245 * 3 2 1 5 5 C 1.52993 * 109.47202 * 185.04583 * 4 3 2 6 6 C 1.52996 * 109.47485 * 185.00100 * 3 2 1 7 7 N 1.46900 * 109.46908 * 65.28513 * 6 3 2 8 8 C 1.46896 * 111.00082 * 72.85352 * 7 6 3 9 9 C 1.50704 * 109.47533 * 195.68250 * 8 7 6 10 10 H 1.08006 * 119.99321 * 4.94021 * 9 8 7 11 11 C 1.37872 * 120.00455 * 184.93896 * 9 8 7 12 12 N 1.31515 * 119.99488 * 5.15233 * 11 9 8 13 13 Si 1.86796 * 120.00260 * 185.15536 * 11 9 8 14 14 H 1.48503 * 109.46905 * 64.99631 * 13 11 9 15 15 H 1.48497 * 109.47027 * 184.99571 * 13 11 9 16 16 H 1.48496 * 109.47037 * 304.99906 * 13 11 9 17 17 C 1.46904 * 111.00034 * 196.80984 * 7 6 3 18 18 C 1.50701 * 109.47374 * 65.79423 * 17 7 6 19 19 C 1.38379 * 119.84977 * 254.70904 * 18 17 7 20 20 C 1.37922 * 120.15539 * 179.76533 * 19 18 17 21 21 C 1.39660 * 119.84240 * 0.51033 * 20 19 18 22 22 C 1.43194 * 120.14944 * 179.72439 * 21 20 19 23 23 N 7.32301 * 131.21239 * 148.84009 * 2 1 3 24 24 C 1.39610 * 119.69672 * 359.74025 * 21 20 19 25 25 C 1.37968 * 119.85012 * 0.02562 * 24 21 20 26 26 C 1.50695 * 119.92717 * 179.97438 * 25 24 21 27 27 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47222 * 299.99951 * 1 2 3 29 29 H 1.09002 * 109.47270 * 59.99551 * 1 2 3 30 30 H 1.08994 * 109.46895 * 240.00612 * 2 1 3 31 31 H 1.08990 * 109.47100 * 120.00082 * 2 1 3 32 32 H 1.08998 * 109.47340 * 305.00162 * 3 2 1 33 33 H 1.08998 * 109.46739 * 305.04596 * 4 3 2 34 34 H 1.09000 * 109.47137 * 65.04434 * 4 3 2 35 35 H 1.08998 * 109.47200 * 183.35799 * 5 4 3 36 36 H 1.09001 * 109.47622 * 303.36184 * 5 4 3 37 37 H 1.09002 * 109.47353 * 63.36086 * 5 4 3 38 38 H 1.09008 * 109.46973 * 305.28939 * 6 3 2 39 39 H 1.08994 * 109.47838 * 185.28823 * 6 3 2 40 40 H 1.08995 * 109.46962 * 315.68398 * 8 7 6 41 41 H 1.09001 * 109.47226 * 75.68235 * 8 7 6 42 42 H 0.97007 * 120.00012 * 180.02562 * 12 11 9 43 43 H 1.09002 * 109.46912 * 185.80083 * 17 7 6 44 44 H 1.09001 * 109.46828 * 305.79754 * 17 7 6 45 45 H 1.08002 * 119.92430 * 0.02562 * 19 18 17 46 46 H 1.07999 * 120.08433 * 180.25159 * 20 19 18 47 47 H 1.08005 * 120.07512 * 180.02562 * 24 21 20 48 48 H 1.09004 * 109.47520 * 272.87091 * 26 25 24 49 49 H 1.09000 * 109.47207 * 32.86492 * 26 25 24 50 50 H 1.08997 * 109.47528 * 152.86740 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3074 5 6 2.0343 3.6026 1.2555 6 6 3.5647 1.4444 -0.1257 7 7 3.9487 0.9028 -1.4362 8 6 3.6525 1.8613 -2.5092 9 6 3.6898 1.1537 -3.8393 10 1 3.8320 0.0837 -3.8779 11 6 3.5422 1.8721 -5.0068 12 7 3.4707 3.1846 -4.9665 13 14 3.4439 0.9811 -6.6457 14 1 2.2114 0.1538 -6.6861 15 1 3.4091 1.9753 -7.7482 16 1 4.6329 0.1060 -6.8054 17 6 5.3659 0.5166 -1.4515 18 6 5.5832 -0.6350 -0.5040 19 6 6.2029 -0.4173 0.7139 20 6 6.4006 -1.4658 1.5879 21 6 5.9831 -2.7515 1.2367 22 6 6.1904 -3.8459 2.1366 23 7 6.3548 -4.7141 2.8505 24 6 5.3632 -2.9648 0.0041 25 6 5.1674 -1.9059 -0.8585 26 6 4.4990 -2.1343 -2.1896 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6053 1.9816 -0.8418 33 1 0.5564 2.0463 1.4406 34 1 2.1414 1.6425 2.1426 35 1 1.8003 4.0760 2.2090 36 1 3.1041 3.6833 1.0627 37 1 1.4829 4.1003 0.4578 38 1 3.9951 0.8270 0.6628 39 1 3.9359 2.4649 -0.0315 40 1 2.6618 2.2877 -2.3522 41 1 4.3965 2.6578 -2.5005 42 1 3.3665 3.6902 -5.7879 43 1 5.6497 0.2159 -2.4601 44 1 5.9767 1.3638 -1.1396 45 1 6.5289 0.5766 0.9826 46 1 6.8808 -1.2939 2.5399 47 1 5.0376 -3.9564 -0.2736 48 1 5.2481 -2.4195 -2.9283 49 1 3.7615 -2.9312 -2.0939 50 1 4.0038 -1.2176 -2.5096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614401958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:06 Heat of formation + Delta-G solvation = 18.925004 kcal Electronic energy + Delta-G solvation = -27038.784255 eV Core-core repulsion = 23643.548419 eV Total energy + Delta-G solvation = -3395.235835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.88620 -39.14584 -37.62192 -36.52686 -34.59480 -33.67358 -32.55859 -32.48641 -29.67426 -28.86259 -27.59679 -26.57148 -24.82670 -23.60346 -23.28394 -22.81017 -21.77123 -20.24838 -19.14035 -18.48604 -16.97902 -16.80300 -16.62630 -15.89289 -15.76753 -15.36006 -15.23543 -15.15407 -14.93408 -14.62538 -14.51540 -14.12417 -14.09377 -14.01986 -13.95256 -13.75548 -13.40910 -13.31360 -12.98866 -12.79122 -12.76272 -12.64431 -12.58326 -12.51949 -12.35228 -12.13082 -12.09514 -11.89024 -11.80152 -11.54627 -11.28071 -11.12319 -11.04057 -10.91169 -10.47776 -9.74217 -9.47566 -8.80576 -8.09119 -6.16071 -0.14183 0.49963 1.47022 1.48807 1.55324 1.63238 1.95621 2.47442 2.89569 2.92247 3.24412 3.49757 3.92575 3.97091 4.01957 4.05560 4.12562 4.31165 4.37565 4.45670 4.47580 4.59575 4.68774 4.71915 4.73632 4.77199 4.87954 4.91717 5.00800 5.01953 5.05153 5.05935 5.10031 5.14416 5.18390 5.25251 5.32774 5.36617 5.37464 5.39737 5.42743 5.43074 5.56959 5.62292 5.72365 5.78772 5.81109 5.91822 6.01265 6.22526 6.46154 6.48044 6.77615 7.02502 7.52978 9.00817 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.009750 B = 0.004846 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.988411 B = 5776.688827 C = 7349.296167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.078 4.078 4 C -0.112 4.112 5 C -0.153 4.153 6 C 0.059 3.941 7 N -0.518 5.518 8 C 0.211 3.789 9 C -0.508 4.508 10 H 0.074 0.926 11 C 0.005 3.995 12 N -0.936 5.936 13 Si 0.953 3.047 14 H -0.271 1.271 15 H -0.293 1.293 16 H -0.265 1.265 17 C 0.096 3.904 18 C -0.043 4.043 19 C -0.115 4.115 20 C -0.066 4.066 21 C -0.041 4.041 22 C 0.285 3.715 23 N -0.468 5.468 24 C -0.069 4.069 25 C -0.062 4.062 26 C -0.131 4.131 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.017 0.983 40 H 0.006 0.994 41 H -0.040 1.040 42 H 0.259 0.741 43 H 0.075 0.925 44 H 0.029 0.971 45 H 0.143 0.857 46 H 0.152 0.848 47 H 0.143 0.857 48 H 0.068 0.932 49 H 0.072 0.928 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -6.350 12.507 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.138 4.138 3 C -0.097 4.097 4 C -0.149 4.149 5 C -0.210 4.210 6 C -0.068 4.068 7 N -0.241 5.241 8 C 0.085 3.915 9 C -0.547 4.547 10 H 0.092 0.908 11 C -0.193 4.193 12 N -0.578 5.578 13 Si 0.779 3.221 14 H -0.197 1.197 15 H -0.219 1.219 16 H -0.190 1.190 17 C -0.031 4.031 18 C -0.044 4.044 19 C -0.133 4.133 20 C -0.086 4.086 21 C -0.045 4.045 22 C -0.029 4.029 23 N -0.144 5.144 24 C -0.089 4.089 25 C -0.062 4.062 26 C -0.187 4.187 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.035 0.965 40 H 0.024 0.976 41 H -0.022 1.022 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.047 0.953 45 H 0.161 0.839 46 H 0.170 0.830 47 H 0.161 0.839 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.172 -7.965 13.408 15.639 hybrid contribution 0.309 1.289 -1.532 2.026 sum 1.480 -6.676 11.875 13.703 Atomic orbital electron populations 1.21798 0.96153 1.01408 1.01194 1.21311 0.95192 0.95610 1.01728 1.21117 0.94628 0.96753 0.97231 1.21553 1.01506 0.95120 0.96762 1.21820 1.01037 0.96733 1.01428 1.22221 0.96056 0.96933 0.91626 1.62013 1.16883 1.42086 1.03127 1.19366 0.93658 0.89178 0.89279 1.21536 1.47547 0.94828 0.90753 0.90784 1.25759 0.95575 0.95271 1.02681 1.70090 1.52115 1.06881 1.28682 0.85676 0.79124 0.78196 0.79105 1.19665 1.21905 1.18985 1.20935 0.89522 0.93989 0.98679 1.20046 0.95482 0.94136 0.94760 1.21129 0.99461 0.99978 0.92760 1.21228 0.97427 0.89842 1.00144 1.15948 1.06576 0.89081 0.92889 1.25853 0.92143 0.92513 0.92390 1.81254 1.10752 1.11366 1.11070 1.21127 0.96702 0.99632 0.91466 1.19669 0.97649 0.91992 0.96938 1.21031 1.00206 1.04294 0.93181 0.92447 0.91864 0.94504 0.92457 0.91998 0.94183 0.91149 0.90965 0.91385 0.93381 0.94370 0.89988 0.96526 0.97641 1.02202 0.93198 0.90655 0.95314 0.83936 0.82989 0.83922 0.91322 0.90862 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.67 71.98 0.70 -2.98 16 2 C -0.10 -2.79 5.35 30.59 0.16 -2.63 16 3 C -0.08 -2.34 1.88 -10.79 -0.02 -2.36 16 4 C -0.11 -2.64 5.27 30.59 0.16 -2.48 16 5 C -0.15 -3.72 9.75 71.98 0.70 -3.01 16 6 C 0.06 1.85 4.10 86.30 0.35 2.21 16 7 N -0.52 -18.90 2.75 -905.37 -2.49 -21.39 16 8 C 0.21 10.16 4.58 85.56 0.39 10.55 16 9 C -0.51 -26.09 8.35 25.60 0.21 -25.88 16 10 H 0.07 3.62 5.83 -2.91 -0.02 3.60 16 11 C 0.00 0.25 5.45 84.65 0.46 0.72 16 12 N -0.94 -54.32 13.28 21.45 0.28 -54.04 16 13 Si 0.95 42.27 29.54 68.60 2.03 44.30 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 15 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 16 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 17 C 0.10 3.16 4.06 85.56 0.35 3.51 16 18 C -0.04 -1.10 4.47 -19.81 -0.09 -1.19 16 19 C -0.11 -2.31 8.64 22.23 0.19 -2.12 16 20 C -0.07 -1.15 9.76 22.54 0.22 -0.93 16 21 C -0.04 -0.81 5.73 -21.36 -0.12 -0.93 16 22 C 0.29 6.35 15.33 88.33 1.35 7.70 16 23 N -0.47 -12.48 18.54 19.00 0.35 -12.13 16 24 C -0.07 -1.41 9.42 22.54 0.21 -1.20 16 25 C -0.06 -1.51 5.87 -19.91 -0.12 -1.63 16 26 C -0.13 -3.48 9.38 71.23 0.67 -2.82 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.36 6.46 -2.38 -0.02 1.34 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.87 7.63 -2.39 -0.02 1.85 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.49 6.46 -2.39 -0.02 1.48 16 33 H 0.07 1.54 6.34 -2.39 -0.02 1.53 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.24 6.31 -2.39 -0.02 1.22 16 37 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 2.21 6.10 -2.38 -0.01 2.20 16 39 H 0.02 0.56 6.17 -2.39 -0.01 0.54 16 40 H 0.01 0.30 6.29 -2.39 -0.02 0.28 16 41 H -0.04 -2.16 8.04 -2.39 -0.02 -2.18 16 42 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 43 H 0.08 2.80 6.56 -2.39 -0.02 2.79 16 44 H 0.03 0.94 7.92 -2.39 -0.02 0.92 16 45 H 0.14 2.46 7.99 -2.91 -0.02 2.44 16 46 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 47 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 48 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 49 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 50 H 0.08 2.81 4.06 -2.39 -0.01 2.80 16 Total: -1.00 -59.75 394.20 6.88 -52.87 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.92 Total: 15.86 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 5.79 Total: -25.48 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -1.85 Total: -87.55 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -59.75 6.88 -52.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614401958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.794 kcal (2) G-P(sol) polarization free energy of solvation -59.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds