Wall clock time and date at job start Tue Mar 31 2020 10:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42910 * 109.46967 * 2 1 4 4 C 1.42894 * 113.99945 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.91298 * 21.74885 * 4 3 2 6 6 C 1.53787 * 113.61524 * 250.49735 * 4 3 2 7 7 C 1.53781 * 87.17304 * 220.06236 * 6 4 3 8 8 C 1.52995 * 113.61469 * 270.75757 * 7 6 4 9 9 O 1.42901 * 109.47006 * 294.41269 * 8 7 6 10 10 N 1.46901 * 113.61402 * 139.93835 * 7 6 4 11 11 C 1.46894 * 111.00155 * 185.08854 * 10 7 6 12 12 C 1.50703 * 109.47495 * 174.77421 * 11 10 7 13 13 O 1.21284 * 119.99428 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00147 * 179.97438 * 12 11 10 15 15 C 1.46493 * 119.99604 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46815 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00293 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99863 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99580 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00050 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47219 * 90.00114 * 20 18 16 22 22 H 1.48503 * 109.47176 * 209.99661 * 20 18 16 23 23 H 1.48499 * 109.47277 * 330.00105 * 20 18 16 24 24 C 1.53785 * 87.08026 * 25.38948 * 7 6 4 25 25 C 1.53005 * 113.61422 * 89.11634 * 24 7 6 26 26 C 1.52998 * 113.61268 * 219.92989 * 24 7 6 27 27 H 1.09001 * 109.46952 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47467 * 299.99475 * 1 2 3 29 29 H 1.09001 * 109.47363 * 60.00237 * 1 2 3 30 30 H 1.09004 * 109.47594 * 240.00675 * 2 1 3 31 31 H 1.08997 * 109.47741 * 120.00074 * 2 1 3 32 32 H 1.08996 * 113.61099 * 105.47071 * 6 4 3 33 33 H 1.09002 * 113.61264 * 334.65490 * 6 4 3 34 34 H 1.09003 * 109.47096 * 54.41440 * 8 7 6 35 35 H 1.08996 * 109.47234 * 174.41364 * 8 7 6 36 36 H 0.96704 * 113.99649 * 180.02562 * 9 8 7 37 37 H 1.00896 * 111.00265 * 61.13339 * 10 7 6 38 38 H 1.09001 * 109.47068 * 294.77699 * 11 10 7 39 39 H 1.09011 * 109.47332 * 54.77249 * 11 10 7 40 40 H 0.97000 * 119.99861 * 359.97438 * 14 12 11 41 41 H 1.08995 * 109.47419 * 299.99804 * 15 14 12 42 42 H 1.08998 * 109.47414 * 60.00287 * 15 14 12 43 43 H 0.97000 * 119.99361 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.47095 * 60.00045 * 25 24 7 45 45 H 1.08998 * 109.47261 * 179.97438 * 25 24 7 46 46 H 1.08997 * 109.46980 * 299.99770 * 25 24 7 47 47 H 1.08997 * 109.46783 * 60.00515 * 26 24 7 48 48 H 1.09003 * 109.46924 * 179.97438 * 26 24 7 49 49 H 1.08993 * 109.47702 * 300.00046 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9276 0.5641 -0.3711 6 6 4.0072 1.9780 1.3290 7 6 4.9916 2.8097 0.4899 8 6 6.2898 2.0713 0.1579 9 8 7.0212 1.8293 1.3615 10 7 5.2229 4.1597 1.0208 11 6 6.0736 4.9430 0.1150 12 6 6.1834 6.3566 0.6257 13 8 5.6091 6.6797 1.6439 14 7 6.9198 7.2616 -0.0489 15 6 7.0260 8.6358 0.4474 16 6 7.8999 9.4391 -0.4812 17 1 8.3325 8.9727 -1.3540 18 6 8.1471 10.7695 -0.2165 19 7 8.9101 11.4703 -1.0266 20 14 7.3983 11.5764 1.2926 21 1 8.3261 11.4317 2.4431 22 1 7.1685 13.0181 1.0205 23 1 6.1052 10.9210 1.6141 24 6 3.9478 2.7619 -0.6385 25 6 2.9380 3.9103 -0.5882 26 6 4.5564 2.5664 -2.0285 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 4.4885 1.2043 1.9271 33 1 3.3049 2.5818 1.9038 34 1 6.0549 1.1211 -0.3218 35 1 6.8917 2.6800 -0.5168 36 1 7.8580 1.3637 1.2263 37 1 5.6209 4.1207 1.9471 38 1 7.0662 4.4947 0.0702 39 1 5.6329 4.9501 -0.8821 40 1 7.3795 7.0030 -0.8630 41 1 6.0335 9.0841 0.4913 42 1 7.4660 8.6291 1.4446 43 1 9.0837 12.4064 -0.8406 44 1 3.4645 4.8611 -0.6722 45 1 2.2337 3.8113 -1.4142 46 1 2.3967 3.8770 0.3573 47 1 5.1071 1.6262 -2.0550 48 1 3.7609 2.5422 -2.7733 49 1 5.2346 3.3911 -2.2476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782010195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:27 Heat of formation + Delta-G solvation = -111.849395 kcal Electronic energy + Delta-G solvation = -27567.210356 eV Core-core repulsion = 23723.161704 eV Total energy + Delta-G solvation = -3844.048653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.11100 -38.81383 -37.61137 -36.28002 -34.36124 -33.73999 -32.31727 -31.36208 -30.80450 -28.47136 -28.27594 -26.51951 -25.55340 -23.29986 -22.73905 -22.15005 -21.63503 -19.83270 -18.10408 -17.78340 -17.27991 -17.01281 -16.16639 -15.94000 -15.69985 -15.39025 -15.29768 -14.99338 -14.45938 -14.31221 -14.09192 -13.64232 -13.53404 -13.36416 -13.04347 -12.84121 -12.67714 -12.55857 -12.47633 -12.24477 -12.06125 -12.05174 -11.83965 -11.61949 -11.47353 -11.32884 -10.99161 -10.84764 -10.73611 -10.71717 -10.31403 -10.13174 -9.94740 -9.50553 -9.47573 -9.14552 -8.75702 -8.37547 -8.08412 -6.20091 -4.22005 3.27809 3.31596 3.35015 3.38023 3.44976 3.62786 3.88311 4.21361 4.32582 4.35600 4.46646 4.60645 4.65922 4.76624 4.83027 4.92395 5.02558 5.05539 5.09574 5.15283 5.17464 5.17877 5.34013 5.38384 5.44869 5.51058 5.59552 5.60842 5.63522 5.75533 5.82771 5.87462 5.90316 5.95758 6.14293 6.31014 6.56824 6.81502 7.00615 7.07158 7.11045 7.28077 7.28931 7.41251 7.44852 8.17264 8.55620 8.77512 9.00732 9.40618 10.91846 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.022228 B = 0.002706 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.370860 B =10343.263742 C =10705.166282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.364 6.364 4 C 0.070 3.930 5 H 0.082 0.918 6 C -0.134 4.134 7 C 0.096 3.904 8 C 0.061 3.939 9 O -0.567 6.567 10 N -0.637 5.637 11 C 0.037 3.963 12 C 0.500 3.500 13 O -0.543 6.543 14 N -0.709 5.709 15 C 0.222 3.778 16 C -0.543 4.543 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.893 5.893 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 C -0.055 4.055 25 C -0.103 4.103 26 C -0.146 4.146 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.380 0.620 37 H 0.356 0.644 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.394 0.606 41 H 0.025 0.975 42 H 0.019 0.981 43 H 0.267 0.733 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.961 -27.051 -1.178 28.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C 0.011 3.989 5 H 0.100 0.900 6 C -0.172 4.172 7 C 0.003 3.997 8 C -0.019 4.019 9 O -0.372 6.372 10 N -0.268 5.268 11 C -0.095 4.095 12 C 0.284 3.716 13 O -0.420 6.420 14 N -0.359 5.359 15 C 0.100 3.900 16 C -0.580 4.580 17 H 0.097 0.903 18 C -0.127 4.127 19 N -0.531 5.531 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.184 1.184 24 C -0.056 4.056 25 C -0.160 4.160 26 C -0.204 4.204 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.226 0.774 37 H 0.176 0.824 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.228 0.772 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.523 -25.856 -0.449 28.311 hybrid contribution 1.669 -0.556 0.102 1.762 sum -9.853 -26.412 -0.347 28.192 Atomic orbital electron populations 1.21737 0.93845 1.02040 1.03245 1.22483 0.95598 0.84359 0.99701 1.87991 1.20190 1.25593 1.94529 1.23739 0.81314 0.97037 0.96810 0.90011 1.23457 0.97672 0.99089 0.96936 1.22067 0.91583 0.88731 0.97305 1.22662 0.93473 0.98738 0.86978 1.86475 1.37655 1.81137 1.31967 1.60346 1.50585 1.10374 1.05524 1.21866 0.96701 0.92618 0.98323 1.20395 0.79573 0.86869 0.84756 1.90659 1.46079 1.80446 1.24835 1.46157 1.49631 1.12130 1.27954 1.19457 0.97212 0.78002 0.95360 1.21100 1.30761 0.95414 1.10766 0.90316 1.24806 0.94375 0.96887 0.96635 1.69885 1.36969 1.08956 1.37250 0.86805 0.80878 0.78796 0.83156 1.19894 1.20924 1.18431 1.22189 0.94707 0.95623 0.93097 1.21210 0.96718 0.96090 1.01997 1.21908 1.01005 1.01461 0.95987 0.91353 0.91773 0.91851 0.93694 0.93593 0.90982 0.88011 0.93227 0.92824 0.77351 0.82390 0.92737 0.88558 0.77239 0.95724 0.96298 0.92295 0.91704 0.93125 0.91722 0.92789 0.91877 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.43 6.51 37.16 0.24 0.67 16 3 O -0.36 -3.78 9.44 -35.23 -0.33 -4.11 16 4 C 0.07 0.66 3.37 -25.83 -0.09 0.57 16 5 H 0.08 0.64 7.21 -51.93 -0.37 0.27 16 6 C -0.13 -1.41 6.87 -25.92 -0.18 -1.59 16 7 C 0.10 1.02 0.65 -130.79 -0.08 0.93 16 8 C 0.06 0.54 4.79 37.16 0.18 0.72 16 9 O -0.57 -5.31 13.46 -35.23 -0.47 -5.78 16 10 N -0.64 -8.70 4.90 -100.39 -0.49 -9.19 16 11 C 0.04 0.52 5.05 -4.98 -0.03 0.50 16 12 C 0.50 9.63 7.88 -10.98 -0.09 9.54 16 13 O -0.54 -12.62 16.32 5.55 0.09 -12.53 16 14 N -0.71 -14.48 5.55 -61.48 -0.34 -14.82 16 15 C 0.22 5.54 4.50 -5.20 -0.02 5.52 16 16 C -0.54 -15.00 9.83 -34.44 -0.34 -15.34 16 17 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 20 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 24 C -0.06 -0.56 0.87 -153.60 -0.13 -0.69 16 25 C -0.10 -1.25 7.86 37.16 0.29 -0.96 16 26 C -0.15 -1.23 8.34 37.16 0.31 -0.92 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.73 7.98 -51.93 -0.41 0.32 16 33 H 0.10 1.24 7.66 -51.93 -0.40 0.84 16 34 H 0.05 0.36 6.41 -51.93 -0.33 0.02 16 35 H 0.05 0.46 6.44 -51.93 -0.33 0.13 16 36 H 0.38 1.94 9.12 45.56 0.42 2.35 16 37 H 0.36 5.36 8.71 -39.29 -0.34 5.02 16 38 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 39 H 0.10 1.21 6.04 -51.92 -0.31 0.89 16 40 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 41 H 0.02 0.66 7.20 -51.93 -0.37 0.28 16 42 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.06 0.89 6.73 -51.93 -0.35 0.54 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.87 7.18 -51.93 -0.37 0.50 16 47 H 0.05 0.37 6.69 -51.93 -0.35 0.02 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.54 7.05 -51.93 -0.37 0.17 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -33.62 384.26 -6.83 -40.44 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.52 Total: 8.61 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 0.35 Total: 0.41 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.06 Total: -49.91 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.72 Total: -22.43 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.62 -6.83 -40.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782010195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.407 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds