Wall clock time and date at job start Tue Mar 31 2020 10:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42908 * 109.47073 * 2 1 4 4 C 1.42897 * 113.99634 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.85498 * 18.80469 * 4 3 2 6 6 C 1.53779 * 113.61372 * 247.49283 * 4 3 2 7 7 C 1.53779 * 87.08498 * 270.88580 * 6 4 3 8 8 C 1.53001 * 113.68607 * 89.12728 * 7 6 4 9 9 O 1.42901 * 109.47347 * 76.61621 * 8 7 6 10 10 N 1.46891 * 113.61749 * 220.01488 * 7 6 4 11 11 C 1.46900 * 111.00060 * 163.57872 * 10 7 6 12 12 C 1.50700 * 109.47229 * 176.15503 * 11 10 7 13 13 O 1.21274 * 120.00178 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99783 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99880 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47106 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00143 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99989 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99863 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47302 * 89.99630 * 20 18 16 22 22 H 1.48497 * 109.47375 * 209.99477 * 20 18 16 23 23 H 1.48498 * 109.47392 * 329.99598 * 20 18 16 24 24 C 1.53776 * 87.08040 * 334.57095 * 7 6 4 25 25 C 1.53003 * 113.61944 * 139.98013 * 24 7 6 26 26 C 1.53006 * 113.61216 * 270.79394 * 24 7 6 27 27 H 1.09007 * 109.47090 * 60.00113 * 1 2 3 28 28 H 1.09005 * 109.47341 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47414 * 300.00563 * 1 2 3 30 30 H 1.09001 * 109.47509 * 239.99980 * 2 1 3 31 31 H 1.08999 * 109.47351 * 119.99651 * 2 1 3 32 32 H 1.09007 * 113.61405 * 156.33747 * 6 4 3 33 33 H 1.08996 * 113.61205 * 25.43872 * 6 4 3 34 34 H 1.09005 * 109.47183 * 196.61510 * 8 7 6 35 35 H 1.09006 * 109.47322 * 316.60872 * 8 7 6 36 36 H 0.96698 * 113.99921 * 180.02562 * 9 8 7 37 37 H 1.00905 * 110.99916 * 39.63340 * 10 7 6 38 38 H 1.08997 * 109.47469 * 296.16421 * 11 10 7 39 39 H 1.09002 * 109.46852 * 56.16463 * 11 10 7 40 40 H 0.96998 * 120.00248 * 0.02562 * 14 12 11 41 41 H 1.09007 * 109.46783 * 299.99723 * 15 14 12 42 42 H 1.08998 * 109.47258 * 59.99698 * 15 14 12 43 43 H 0.97005 * 119.99946 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.46856 * 59.99335 * 25 24 7 45 45 H 1.08999 * 109.47182 * 179.97438 * 25 24 7 46 46 H 1.08995 * 109.46842 * 299.99762 * 25 24 7 47 47 H 1.09002 * 109.46998 * 53.42848 * 26 24 7 48 48 H 1.08997 * 109.47581 * 173.42503 * 26 24 7 49 49 H 1.08999 * 109.47297 * 293.42997 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9280 0.5456 -0.3228 6 6 4.0018 2.0466 1.3024 7 6 3.8391 3.4328 0.6569 8 6 2.4711 4.0707 0.9074 9 8 2.4206 4.5814 2.2411 10 7 4.9544 4.3468 0.9366 11 6 4.9487 5.4844 0.0072 12 6 6.0466 6.4458 0.3831 13 8 6.7636 6.2067 1.3315 14 7 6.2317 7.5713 -0.3348 15 6 7.2994 8.5057 0.0303 16 6 7.2926 9.6734 -0.9224 17 1 6.5660 9.7151 -1.7203 18 6 8.2141 10.6884 -0.7755 19 7 8.2084 11.7071 -1.6071 20 14 9.4714 10.6159 0.6041 21 1 10.6902 9.9146 0.1267 22 1 9.8264 11.9955 1.0234 23 1 8.8973 9.8798 1.7590 24 6 3.9488 2.7251 -0.7039 25 6 2.9883 3.2753 -1.7602 26 6 5.3854 2.5995 -1.2152 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.0399 1.7702 1.4875 33 1 3.3602 1.8908 2.1697 34 1 2.3152 4.8855 0.2003 35 1 1.6909 3.3210 0.7755 36 1 1.5799 5.0006 2.4701 37 1 5.8375 3.8596 0.9062 38 1 5.1127 5.1246 -1.0085 39 1 3.9862 5.9930 0.0615 40 1 5.6580 7.7628 -1.0931 41 1 7.1359 8.8653 1.0462 42 1 8.2619 7.9971 -0.0247 43 1 8.8570 12.4211 -1.5039 44 1 3.1968 4.3323 -1.9254 45 1 3.1227 2.7285 -2.6935 46 1 1.9615 3.1573 -1.4141 47 1 6.0032 2.1283 -0.4508 48 1 5.3975 1.9899 -2.1187 49 1 5.7790 3.5907 -1.4404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782010207.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:32 Heat of formation + Delta-G solvation = -105.576295 kcal Electronic energy + Delta-G solvation = -27792.076866 eV Core-core repulsion = 23948.300235 eV Total energy + Delta-G solvation = -3843.776631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33059 -38.79320 -37.46009 -36.10784 -34.30035 -33.55230 -32.30155 -31.49308 -30.80043 -28.72359 -28.37763 -26.44093 -25.50889 -23.36957 -22.79913 -22.11538 -21.52805 -19.79426 -18.35848 -17.55206 -17.39620 -16.76461 -16.14727 -15.94071 -15.83774 -15.42988 -15.30544 -14.85002 -14.38104 -14.32788 -14.02622 -13.63548 -13.49243 -13.35581 -13.12568 -12.82347 -12.59297 -12.55372 -12.48956 -12.31118 -12.25419 -12.21236 -11.86291 -11.63583 -11.50898 -11.38886 -10.98821 -10.88982 -10.77407 -10.70870 -10.41383 -9.93828 -9.77120 -9.67742 -9.46195 -9.10179 -8.74642 -8.16669 -8.04152 -6.18983 -4.20793 3.14060 3.28694 3.34578 3.35903 3.45894 3.67137 3.95786 4.19404 4.36286 4.40325 4.50435 4.55175 4.69029 4.75807 4.83325 4.92876 4.97812 5.01866 5.16473 5.23490 5.27210 5.30244 5.34496 5.41742 5.44086 5.50824 5.51232 5.59211 5.63154 5.68023 5.69650 5.72996 5.80845 5.83957 5.92979 6.09472 6.16426 6.83204 6.92035 7.06405 7.12682 7.30558 7.43251 7.47205 7.73875 8.19010 8.57814 8.78962 9.03469 9.41837 10.92958 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.002666 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.106078 B =10498.963778 C =10601.138174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.361 6.361 4 C 0.074 3.926 5 H 0.075 0.925 6 C -0.143 4.143 7 C 0.118 3.882 8 C 0.104 3.896 9 O -0.554 6.554 10 N -0.642 5.642 11 C 0.040 3.960 12 C 0.499 3.501 13 O -0.544 6.544 14 N -0.709 5.709 15 C 0.222 3.778 16 C -0.542 4.542 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.893 5.893 20 Si 0.877 3.123 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.260 1.260 24 C -0.114 4.114 25 C -0.136 4.136 26 C -0.137 4.137 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.371 0.629 37 H 0.348 0.652 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.395 0.605 41 H 0.025 0.975 42 H 0.019 0.981 43 H 0.267 0.733 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.764 -24.998 0.201 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.280 6.280 4 C 0.015 3.985 5 H 0.093 0.907 6 C -0.181 4.181 7 C 0.026 3.974 8 C 0.025 3.975 9 O -0.357 6.357 10 N -0.273 5.273 11 C -0.092 4.092 12 C 0.284 3.716 13 O -0.421 6.421 14 N -0.359 5.359 15 C 0.100 3.900 16 C -0.580 4.580 17 H 0.097 0.903 18 C -0.127 4.127 19 N -0.531 5.531 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.184 1.184 24 C -0.117 4.117 25 C -0.194 4.194 26 C -0.194 4.194 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.216 0.784 37 H 0.169 0.831 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.228 0.772 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.963 -24.692 1.364 28.904 hybrid contribution 0.356 -0.180 -0.689 0.796 sum -14.608 -24.872 0.675 28.852 Atomic orbital electron populations 1.21745 0.93722 1.02248 1.03148 1.22527 0.95505 0.83943 1.00035 1.87842 1.19626 1.26081 1.94465 1.23027 0.81550 0.97357 0.96574 0.90709 1.23546 1.01904 0.94730 0.97945 1.22153 0.91778 0.90773 0.92695 1.21910 0.94886 0.96613 0.84062 1.86623 1.40023 1.79185 1.29883 1.59816 1.05617 1.09516 1.52377 1.21881 0.99396 0.93049 0.94914 1.20444 0.85258 0.82621 0.83322 1.90648 1.47478 1.75672 1.28329 1.46161 1.35793 1.21633 1.32321 1.19457 0.85826 0.88005 0.96751 1.21102 1.18403 1.03782 1.14705 0.90303 1.24802 0.97113 0.94785 0.95998 1.69882 1.36370 1.09920 1.36908 0.86808 0.81980 0.77666 0.83203 1.19907 1.20929 1.18434 1.22896 0.96387 0.96153 0.96269 1.21668 0.99621 1.00521 0.97552 1.21705 0.93445 1.02990 1.01305 0.91855 0.91178 0.91805 0.93425 0.93357 0.88970 0.89891 0.94062 0.91382 0.78356 0.83103 0.92489 0.88715 0.77229 0.95755 0.96316 0.92306 0.92501 0.92779 0.91109 0.91976 0.91660 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.06 0.37 6.50 37.16 0.24 0.61 16 3 O -0.36 -3.12 6.75 -35.23 -0.24 -3.36 16 4 C 0.07 0.63 3.82 -25.92 -0.10 0.53 16 5 H 0.07 0.55 7.83 -51.93 -0.41 0.15 16 6 C -0.14 -1.46 6.87 -25.92 -0.18 -1.64 16 7 C 0.12 1.34 0.74 -130.80 -0.10 1.24 16 8 C 0.10 1.16 4.71 37.16 0.18 1.33 16 9 O -0.55 -7.06 13.53 -35.23 -0.48 -7.53 16 10 N -0.64 -9.19 5.60 -100.40 -0.56 -9.75 16 11 C 0.04 0.58 5.33 -4.98 -0.03 0.55 16 12 C 0.50 9.87 7.88 -10.99 -0.09 9.78 16 13 O -0.54 -12.91 16.29 5.56 0.09 -12.82 16 14 N -0.71 -14.75 5.55 -61.47 -0.34 -15.09 16 15 C 0.22 5.60 4.50 -5.19 -0.02 5.58 16 16 C -0.54 -15.09 9.83 -34.44 -0.34 -15.43 16 17 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 20 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 24 C -0.11 -1.06 0.76 -153.69 -0.12 -1.17 16 25 C -0.14 -1.21 7.95 37.16 0.30 -0.92 16 26 C -0.14 -1.23 7.78 37.16 0.29 -0.94 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.89 7.48 -51.92 -0.39 0.50 16 33 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 34 H 0.04 0.45 6.54 -51.93 -0.34 0.11 16 35 H 0.07 0.71 5.63 -51.93 -0.29 0.41 16 36 H 0.37 3.06 9.12 45.56 0.42 3.47 16 37 H 0.35 5.01 7.13 -39.29 -0.28 4.73 16 38 H 0.06 0.71 5.12 -51.93 -0.27 0.45 16 39 H 0.09 1.32 6.67 -51.93 -0.35 0.97 16 40 H 0.39 7.18 8.32 -40.82 -0.34 6.84 16 41 H 0.02 0.66 7.20 -51.93 -0.37 0.28 16 42 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.06 0.52 7.48 -51.93 -0.39 0.13 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.64 6.03 -51.93 -0.31 0.33 16 47 H 0.06 0.53 7.01 -51.93 -0.36 0.17 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.71 5.68 -51.93 -0.29 0.42 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -34.54 378.36 -6.73 -41.27 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.33 Total: 9.22 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 0.32 Total: 1.20 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.13 Total: -50.85 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.62 Total: -23.71 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.54 -6.73 -41.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782010207.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.307 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds