Wall clock time and date at job start Tue Mar 31 2020 11:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47083 * 299.99464 * 3 2 1 6 6 H 1.48496 * 109.47361 * 59.99227 * 3 2 1 7 7 C 1.37885 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99765 * 173.49134 * 7 2 1 9 9 C 1.50695 * 119.99770 * 353.49088 * 7 2 1 10 10 C 1.53007 * 115.55034 * 85.35781 * 9 7 2 11 11 N 1.46897 * 109.46848 * 65.04093 * 10 9 7 12 12 C 1.46896 * 111.00243 * 185.40222 * 11 10 9 13 13 C 1.50700 * 109.47343 * 179.97438 * 12 11 10 14 14 C 1.38127 * 120.03937 * 259.99836 * 13 12 11 15 15 C 1.38261 * 120.07365 * 179.97438 * 14 13 12 16 16 C 1.38309 * 120.15050 * 359.97438 * 15 14 13 17 17 C 1.38083 * 120.07636 * 0.02562 * 16 15 14 18 18 C 1.38888 * 120.03278 * 79.98080 * 13 12 11 19 19 N 1.39677 * 120.07996 * 0.04208 * 18 13 12 20 20 C 1.46839 * 111.00045 * 244.20957 * 19 18 13 21 21 C 1.53038 * 109.52196 * 174.15538 * 20 19 18 22 22 C 1.53115 * 109.27419 * 59.18455 * 21 20 19 23 23 C 1.53117 * 109.16109 * 302.34219 * 22 21 20 24 24 C 1.46849 * 110.99904 * 119.99617 * 19 18 13 25 25 C 1.52996 * 117.49999 * 231.03046 * 9 7 2 26 26 C 1.52999 * 117.50168 * 299.68913 * 9 7 2 27 27 H 0.97003 * 119.99885 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46904 * 305.04701 * 10 9 7 29 29 H 1.08997 * 109.47288 * 185.04055 * 10 9 7 30 30 H 1.00904 * 111.00326 * 61.45017 * 11 10 9 31 31 H 1.09004 * 109.46861 * 59.99893 * 12 11 10 32 32 H 1.08999 * 109.47124 * 300.00184 * 12 11 10 33 33 H 1.07995 * 119.95794 * 0.02562 * 14 13 12 34 34 H 1.08003 * 119.92318 * 179.73008 * 15 14 13 35 35 H 1.07998 * 119.96483 * 179.97438 * 16 15 14 36 36 H 1.07996 * 120.03967 * 180.02562 * 17 16 15 37 37 H 1.08997 * 109.46623 * 294.17882 * 20 19 18 38 38 H 1.09002 * 109.46004 * 54.14389 * 20 19 18 39 39 H 1.08992 * 109.50527 * 299.24016 * 21 20 19 40 40 H 1.09006 * 109.53511 * 179.13952 * 21 20 19 41 41 H 1.09007 * 109.52141 * 182.43554 * 22 21 20 42 42 H 1.09003 * 109.57797 * 62.28326 * 22 21 20 43 43 H 1.09001 * 109.50122 * 297.71139 * 23 22 21 44 44 H 1.09004 * 109.53762 * 177.61974 * 23 22 21 45 45 H 1.08994 * 109.46419 * 305.85827 * 24 19 18 46 46 H 1.09003 * 109.45726 * 65.84061 * 24 19 18 47 47 H 1.09003 * 117.49840 * 215.00473 * 25 9 7 48 48 H 1.09005 * 117.49974 * 0.02562 * 25 9 7 49 49 H 1.08998 * 117.49679 * 359.97438 * 26 9 7 50 50 H 1.09001 * 117.49952 * 144.97239 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0793 -1.1971 -0.1055 9 6 1.2584 -2.4949 0.1491 10 6 0.7001 -3.0871 -1.1466 11 7 1.8106 -3.4592 -2.0332 12 6 1.3128 -3.9129 -3.3386 13 6 2.4780 -4.2845 -4.2192 14 6 2.9295 -3.3995 -5.1787 15 6 3.9987 -3.7395 -5.9865 16 6 4.6202 -4.9659 -5.8367 17 6 4.1740 -5.8555 -4.8795 18 6 3.0993 -5.5173 -4.0664 19 7 2.6450 -6.4149 -3.0975 20 6 3.6720 -6.6492 -2.0745 21 6 3.0915 -7.5187 -0.9569 22 6 2.6187 -8.8504 -1.5464 23 6 1.5854 -8.5761 -2.6426 24 6 2.2094 -7.6759 -3.7113 25 6 1.7489 -3.4726 1.2188 26 6 0.4441 -2.7002 1.4280 27 1 -0.4850 0.8401 -0.0004 28 1 0.0713 -2.3477 -1.6426 29 1 0.1073 -3.9721 -0.9157 30 1 2.3954 -4.1614 -1.6053 31 1 0.7436 -3.1111 -3.8090 32 1 0.6698 -4.7821 -3.2002 33 1 2.4472 -2.4405 -5.2974 34 1 4.3470 -3.0473 -6.7390 35 1 5.4549 -5.2286 -6.4696 36 1 4.6600 -6.8128 -4.7627 37 1 4.5242 -7.1580 -2.5251 38 1 3.9966 -5.6946 -1.6605 39 1 2.2480 -7.0045 -0.4966 40 1 3.8582 -7.7055 -0.2049 41 1 2.1651 -9.4557 -0.7614 42 1 3.4686 -9.3837 -1.9722 43 1 0.7180 -8.0785 -2.2087 44 1 1.2758 -9.5179 -3.0956 45 1 1.4718 -7.4669 -4.4861 46 1 3.0685 -8.1800 -4.1541 47 1 1.6740 -4.5377 0.9995 48 1 2.6111 -3.1747 1.8155 49 1 0.4484 -1.8945 2.1621 50 1 -0.4896 -3.2567 1.3462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797468478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:39 Heat of formation + Delta-G solvation = 49.820107 kcal Electronic energy + Delta-G solvation = -27171.812647 eV Core-core repulsion = 23777.916524 eV Total energy + Delta-G solvation = -3393.896123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.30053 -37.91943 -36.85920 -34.42360 -33.64490 -31.75729 -30.93249 -30.83398 -29.11335 -26.21903 -25.14112 -24.40906 -23.16656 -22.89576 -21.97011 -20.98102 -20.46371 -19.61352 -18.87043 -17.20848 -16.18946 -15.60723 -15.45599 -15.07181 -14.77754 -14.54526 -14.27256 -14.14920 -13.85107 -13.70658 -13.46451 -13.30350 -13.17659 -13.07249 -12.57914 -12.40172 -12.02356 -11.74207 -11.54820 -11.30163 -11.15380 -11.06462 -10.91649 -10.88166 -10.73275 -10.56472 -10.52791 -10.40566 -10.34348 -10.07495 -9.35904 -8.72458 -8.66746 -8.48026 -8.43045 -8.27726 -7.93870 -7.30592 -5.87147 -3.87542 1.41671 1.53231 3.38329 3.46306 3.51521 3.77914 3.85394 4.55117 4.70186 4.78574 4.82911 4.98568 4.99633 5.12817 5.15671 5.26328 5.30349 5.41065 5.43599 5.45656 5.51179 5.55371 5.62082 5.69672 5.73464 5.80078 5.84493 5.91626 6.00821 6.06047 6.11121 6.12605 6.29735 6.30599 6.34394 6.47086 6.53080 6.60331 6.63959 6.73882 6.81000 6.83933 6.96532 7.01012 7.03866 7.21246 7.51198 7.56814 7.71749 8.06200 8.13034 8.38631 8.67620 9.11548 9.74908 11.22901 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.004471 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.998638 B = 6260.511490 C = 7759.805350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.465 4.465 8 H 0.058 0.942 9 C 0.055 3.945 10 C 0.110 3.890 11 N -0.659 5.659 12 C 0.107 3.893 13 C -0.042 4.042 14 C -0.096 4.096 15 C -0.123 4.123 16 C -0.120 4.120 17 C -0.152 4.152 18 C 0.090 3.910 19 N -0.497 5.497 20 C 0.062 3.938 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.117 4.117 24 C 0.062 3.938 25 C -0.215 4.215 26 C -0.159 4.159 27 H 0.255 0.745 28 H 0.073 0.927 29 H -0.007 1.007 30 H 0.333 0.667 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.033 0.967 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.033 0.967 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.422 -16.347 -9.401 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.503 4.503 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.018 4.018 11 N -0.289 5.289 12 C -0.023 4.023 13 C -0.044 4.044 14 C -0.115 4.115 15 C -0.141 4.141 16 C -0.139 4.139 17 C -0.172 4.172 18 C -0.004 4.004 19 N -0.219 5.219 20 C -0.065 4.065 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.064 4.064 25 C -0.252 4.252 26 C -0.198 4.198 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.011 0.989 30 H 0.150 0.850 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.051 0.949 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.944 -15.377 -9.351 18.664 hybrid contribution 0.796 -0.290 -0.175 0.865 sum 5.740 -15.667 -9.526 19.213 Atomic orbital electron populations 1.70025 1.05762 1.25871 1.50809 1.24923 0.94718 0.98608 0.95211 0.86636 0.80360 0.84313 0.77256 1.19842 1.21290 1.21363 1.20344 0.92822 0.88432 1.48684 0.92342 1.18818 0.96933 0.93607 0.85252 1.21501 0.90764 0.95638 0.93939 1.60393 1.21583 1.44642 1.02327 1.20692 0.92686 0.98037 0.90854 1.19887 0.97014 0.91891 0.95561 1.21089 0.96481 0.99017 0.94952 1.21130 0.96576 0.96624 0.99803 1.20907 1.00018 0.94403 0.98601 1.21510 0.98009 0.99885 0.97768 1.18607 0.94651 0.93378 0.93788 1.59450 1.38820 1.11171 1.12438 1.22153 0.91654 1.00404 0.92252 1.21599 1.01512 0.95334 0.97115 1.21571 0.98618 0.97353 0.98217 1.21592 0.99009 0.98624 0.96247 1.22102 0.98955 0.88915 0.96458 1.22967 0.98338 0.95468 1.08444 1.22505 0.91974 1.01143 1.04132 0.93497 0.90848 0.98906 0.84964 0.91377 0.94575 0.85510 0.86296 0.86670 0.86961 0.94877 0.89969 0.90656 0.91377 0.91868 0.92554 0.90900 0.91707 0.90857 0.94861 0.92214 0.90729 0.90212 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 12.92 55.43 0.72 -24.77 16 2 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.46 -12.84 8.74 -34.44 -0.30 -13.14 16 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.05 1.35 1.55 -155.66 -0.24 1.11 16 10 C 0.11 2.51 5.51 -3.82 -0.02 2.49 16 11 N -0.66 -13.35 6.36 -115.06 -0.73 -14.08 16 12 C 0.11 1.85 5.43 -4.98 -0.03 1.82 16 13 C -0.04 -0.65 5.41 -104.42 -0.56 -1.22 16 14 C -0.10 -1.39 9.66 -39.61 -0.38 -1.77 16 15 C -0.12 -1.53 10.04 -39.55 -0.40 -1.93 16 16 C -0.12 -1.42 10.04 -39.61 -0.40 -1.82 16 17 C -0.15 -1.89 8.70 -39.38 -0.34 -2.23 16 18 C 0.09 1.25 4.66 -83.78 -0.39 0.86 16 19 N -0.50 -6.40 3.61 -171.15 -0.62 -7.01 16 20 C 0.06 0.75 5.00 -3.84 -0.02 0.73 16 21 C -0.12 -1.29 6.09 -26.65 -0.16 -1.45 16 22 C -0.12 -1.12 6.00 -26.61 -0.16 -1.28 16 23 C -0.12 -1.14 6.09 -26.65 -0.16 -1.30 16 24 C 0.06 0.68 5.12 -3.84 -0.02 0.66 16 25 C -0.21 -4.73 9.96 -26.70 -0.27 -5.00 16 26 C -0.16 -3.81 9.42 -26.70 -0.25 -4.07 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.07 1.87 8.13 -51.93 -0.42 1.45 16 29 H -0.01 -0.16 8.09 -51.93 -0.42 -0.58 16 30 H 0.33 6.53 7.80 -39.29 -0.31 6.22 16 31 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 32 H 0.04 0.62 7.80 -51.93 -0.40 0.22 16 33 H 0.13 1.78 8.04 -52.49 -0.42 1.35 16 34 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.11 1.24 7.13 -52.49 -0.37 0.86 16 37 H 0.03 0.38 7.55 -51.93 -0.39 -0.02 16 38 H 0.08 1.15 7.46 -51.93 -0.39 0.76 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 46 H 0.03 0.34 7.33 -51.93 -0.38 -0.04 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 48 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 49 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 50 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -28.78 395.68 -12.86 -41.64 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -8.97 Total: 7.30 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -4.20 Total: -25.77 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.63 Total: -45.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.78 -12.86 -41.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797468478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.459 kcal (2) G-P(sol) polarization free energy of solvation -28.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds