Wall clock time and date at job start Tue Mar 31 2020 11:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47083 * 299.99464 * 3 2 1 6 6 H 1.48496 * 109.47361 * 59.99227 * 3 2 1 7 7 C 1.37885 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99765 * 173.49134 * 7 2 1 9 9 C 1.50695 * 119.99770 * 353.49088 * 7 2 1 10 10 C 1.53007 * 115.55034 * 85.35781 * 9 7 2 11 11 N 1.46897 * 109.46848 * 65.04093 * 10 9 7 12 12 C 1.46896 * 111.00243 * 185.40222 * 11 10 9 13 13 C 1.50700 * 109.47343 * 179.97438 * 12 11 10 14 14 C 1.38127 * 120.03937 * 259.99836 * 13 12 11 15 15 C 1.38261 * 120.07365 * 179.97438 * 14 13 12 16 16 C 1.38309 * 120.15050 * 359.97438 * 15 14 13 17 17 C 1.38083 * 120.07636 * 0.02562 * 16 15 14 18 18 C 1.38888 * 120.03278 * 79.98080 * 13 12 11 19 19 N 1.39677 * 120.07996 * 0.04208 * 18 13 12 20 20 C 1.46839 * 111.00045 * 244.20957 * 19 18 13 21 21 C 1.53038 * 109.52196 * 174.15538 * 20 19 18 22 22 C 1.53115 * 109.27419 * 59.18455 * 21 20 19 23 23 C 1.53117 * 109.16109 * 302.34219 * 22 21 20 24 24 C 1.46849 * 110.99904 * 119.99617 * 19 18 13 25 25 C 1.52996 * 117.49999 * 231.03046 * 9 7 2 26 26 C 1.52999 * 117.50168 * 299.68913 * 9 7 2 27 27 H 0.97003 * 119.99885 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46904 * 305.04701 * 10 9 7 29 29 H 1.08997 * 109.47288 * 185.04055 * 10 9 7 30 30 H 1.00904 * 111.00326 * 61.45017 * 11 10 9 31 31 H 1.09004 * 109.46861 * 59.99893 * 12 11 10 32 32 H 1.08999 * 109.47124 * 300.00184 * 12 11 10 33 33 H 1.07995 * 119.95794 * 0.02562 * 14 13 12 34 34 H 1.08003 * 119.92318 * 179.73008 * 15 14 13 35 35 H 1.07998 * 119.96483 * 179.97438 * 16 15 14 36 36 H 1.07996 * 120.03967 * 180.02562 * 17 16 15 37 37 H 1.08997 * 109.46623 * 294.17882 * 20 19 18 38 38 H 1.09002 * 109.46004 * 54.14389 * 20 19 18 39 39 H 1.08992 * 109.50527 * 299.24016 * 21 20 19 40 40 H 1.09006 * 109.53511 * 179.13952 * 21 20 19 41 41 H 1.09007 * 109.52141 * 182.43554 * 22 21 20 42 42 H 1.09003 * 109.57797 * 62.28326 * 22 21 20 43 43 H 1.09001 * 109.50122 * 297.71139 * 23 22 21 44 44 H 1.09004 * 109.53762 * 177.61974 * 23 22 21 45 45 H 1.08994 * 109.46419 * 305.85827 * 24 19 18 46 46 H 1.09003 * 109.45726 * 65.84061 * 24 19 18 47 47 H 1.09003 * 117.49840 * 215.00473 * 25 9 7 48 48 H 1.09005 * 117.49974 * 0.02562 * 25 9 7 49 49 H 1.08998 * 117.49679 * 359.97438 * 26 9 7 50 50 H 1.09001 * 117.49952 * 144.97239 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0793 -1.1971 -0.1055 9 6 1.2584 -2.4949 0.1491 10 6 0.7001 -3.0871 -1.1466 11 7 1.8106 -3.4592 -2.0332 12 6 1.3128 -3.9129 -3.3386 13 6 2.4780 -4.2845 -4.2192 14 6 2.9295 -3.3995 -5.1787 15 6 3.9987 -3.7395 -5.9865 16 6 4.6202 -4.9659 -5.8367 17 6 4.1740 -5.8555 -4.8795 18 6 3.0993 -5.5173 -4.0664 19 7 2.6450 -6.4149 -3.0975 20 6 3.6720 -6.6492 -2.0745 21 6 3.0915 -7.5187 -0.9569 22 6 2.6187 -8.8504 -1.5464 23 6 1.5854 -8.5761 -2.6426 24 6 2.2094 -7.6759 -3.7113 25 6 1.7489 -3.4726 1.2188 26 6 0.4441 -2.7002 1.4280 27 1 -0.4850 0.8401 -0.0004 28 1 0.0713 -2.3477 -1.6426 29 1 0.1073 -3.9721 -0.9157 30 1 2.3954 -4.1614 -1.6053 31 1 0.7436 -3.1111 -3.8090 32 1 0.6698 -4.7821 -3.2002 33 1 2.4472 -2.4405 -5.2974 34 1 4.3470 -3.0473 -6.7390 35 1 5.4549 -5.2286 -6.4696 36 1 4.6600 -6.8128 -4.7627 37 1 4.5242 -7.1580 -2.5251 38 1 3.9966 -5.6946 -1.6605 39 1 2.2480 -7.0045 -0.4966 40 1 3.8582 -7.7055 -0.2049 41 1 2.1651 -9.4557 -0.7614 42 1 3.4686 -9.3837 -1.9722 43 1 0.7180 -8.0785 -2.2087 44 1 1.2758 -9.5179 -3.0956 45 1 1.4718 -7.4669 -4.4861 46 1 3.0685 -8.1800 -4.1541 47 1 1.6740 -4.5377 0.9995 48 1 2.6111 -3.1747 1.8155 49 1 0.4484 -1.8945 2.1621 50 1 -0.4896 -3.2567 1.3462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797468478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:38 Heat of formation + Delta-G solvation = 35.914878 kcal Electronic energy + Delta-G solvation = -27172.415623 eV Core-core repulsion = 23777.916524 eV Total energy + Delta-G solvation = -3394.499099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29206 -38.93974 -38.62890 -35.94690 -34.55537 -33.87825 -32.10407 -31.76778 -30.10569 -27.91998 -27.00307 -25.35960 -24.50232 -23.96391 -23.03415 -22.77996 -21.60875 -20.84636 -20.45526 -18.29634 -17.92854 -16.92438 -16.63607 -16.48429 -16.02393 -15.94664 -15.52595 -15.40737 -15.13627 -15.04576 -14.79520 -14.51688 -14.39804 -14.05908 -13.94259 -13.41451 -13.35573 -13.16413 -12.92687 -12.89122 -12.85025 -12.54161 -12.37592 -12.20848 -12.15975 -12.02849 -11.95498 -11.61469 -11.36082 -11.29625 -11.24691 -10.70902 -10.35501 -9.93236 -9.71234 -9.50996 -9.36323 -8.92436 -8.01304 -6.06972 0.40732 0.48653 1.41610 1.44250 1.55058 2.49420 2.78365 2.87425 3.28588 3.46511 3.79680 3.87233 3.96646 3.98401 4.02113 4.07382 4.20386 4.30762 4.38877 4.43475 4.47141 4.48712 4.58218 4.59358 4.65416 4.71699 4.74262 4.78628 4.85889 4.90154 4.93642 4.94790 5.00037 5.01117 5.11158 5.13091 5.16103 5.24229 5.29777 5.31007 5.47011 5.53501 5.60943 5.66056 5.71742 5.78041 5.90741 5.99419 6.08377 6.40303 6.53670 6.55664 6.83211 6.96362 7.57806 9.08118 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.004471 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.998638 B = 6260.511490 C = 7759.805350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.476 4.476 8 H 0.045 0.955 9 C 0.028 3.972 10 C 0.128 3.872 11 N -0.666 5.666 12 C 0.117 3.883 13 C -0.069 4.069 14 C -0.113 4.113 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.153 4.153 18 C 0.087 3.913 19 N -0.512 5.512 20 C 0.065 3.935 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.114 4.114 24 C 0.063 3.937 25 C -0.185 4.185 26 C -0.165 4.165 27 H 0.255 0.745 28 H 0.039 0.961 29 H 0.000 1.000 30 H 0.337 0.663 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.132 0.868 37 H 0.045 0.955 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.046 0.954 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.310 -18.229 -10.312 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.770 3.230 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.001 4.001 11 N -0.296 5.296 12 C -0.012 4.012 13 C -0.070 4.070 14 C -0.132 4.132 15 C -0.143 4.143 16 C -0.132 4.132 17 C -0.173 4.173 18 C -0.007 4.007 19 N -0.234 5.234 20 C -0.061 4.061 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.063 4.063 25 C -0.223 4.223 26 C -0.203 4.203 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.018 0.982 30 H 0.155 0.845 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.138 0.862 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.104 0.896 48 H 0.093 0.907 49 H 0.076 0.924 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.841 -17.271 -10.262 21.222 hybrid contribution 0.240 0.261 0.066 0.361 sum 7.081 -17.010 -10.196 21.058 Atomic orbital electron populations 1.70125 1.06867 1.26460 1.51737 1.25560 0.95461 1.01477 0.95146 0.85733 0.79233 0.80761 0.77240 1.19557 1.21115 1.20867 1.20527 0.92346 0.90066 1.48438 0.93715 1.18910 0.98067 0.93894 0.86439 1.21132 0.90992 0.94753 0.93267 1.60305 1.20929 1.45411 1.02994 1.20550 0.93716 0.97244 0.89706 1.19791 0.97407 0.93415 0.96417 1.21184 0.97575 0.98823 0.95647 1.21399 0.95661 0.97523 0.99687 1.21299 1.00156 0.93590 0.98152 1.21735 0.97367 1.00821 0.97356 1.18692 0.94907 0.92943 0.94181 1.59416 1.39235 1.12066 1.12675 1.22100 0.92021 0.99519 0.92468 1.21581 1.00988 0.95841 0.96932 1.21545 0.98931 0.96473 0.98268 1.21581 0.98406 0.99046 0.96121 1.22137 0.99228 0.88281 0.96634 1.22926 0.97059 0.96292 1.05976 1.22416 0.93377 1.01246 1.03245 0.93565 0.94294 0.98197 0.84477 0.92792 0.94722 0.86233 0.83957 0.83563 0.85059 0.93633 0.92378 0.92786 0.90257 0.90930 0.91201 0.92663 0.89699 0.91567 0.93597 0.89621 0.90658 0.92394 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.66 12.92 21.45 0.28 -53.39 16 2 C 0.02 1.26 5.39 84.66 0.46 1.72 16 3 Si 0.94 45.26 29.54 68.60 2.03 47.29 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.48 -26.77 8.74 25.60 0.22 -26.55 16 8 H 0.04 2.58 7.82 -2.91 -0.02 2.56 16 9 C 0.03 1.39 1.55 -52.93 -0.08 1.30 16 10 C 0.13 6.00 5.51 86.31 0.48 6.47 16 11 N -0.67 -27.68 6.36 -517.94 -3.30 -30.98 16 12 C 0.12 4.20 5.43 85.56 0.46 4.67 16 13 C -0.07 -2.15 5.41 -19.73 -0.11 -2.26 16 14 C -0.11 -3.27 9.66 22.25 0.21 -3.05 16 15 C -0.12 -2.87 10.04 22.29 0.22 -2.65 16 16 C -0.11 -2.33 10.04 22.25 0.22 -2.11 16 17 C -0.15 -3.42 8.70 22.40 0.19 -3.23 16 18 C 0.09 2.34 4.66 38.21 0.18 2.52 16 19 N -0.51 -12.69 3.61 -695.41 -2.51 -15.21 16 20 C 0.07 1.51 5.00 86.33 0.43 1.94 16 21 C -0.12 -2.35 6.09 30.65 0.19 -2.16 16 22 C -0.11 -1.86 6.00 30.67 0.18 -1.68 16 23 C -0.11 -2.00 6.09 30.64 0.19 -1.81 16 24 C 0.06 1.27 5.12 86.32 0.44 1.72 16 25 C -0.19 -8.05 9.96 30.62 0.30 -7.74 16 26 C -0.16 -7.95 9.42 30.62 0.29 -7.66 16 27 H 0.26 14.40 8.31 -92.71 -0.77 13.62 16 28 H 0.04 2.07 8.13 -2.39 -0.02 2.05 16 29 H 0.00 0.00 8.09 -2.39 -0.02 -0.02 16 30 H 0.34 13.44 7.80 -89.69 -0.70 12.74 16 31 H 0.05 2.04 8.00 -2.39 -0.02 2.02 16 32 H 0.03 1.24 7.80 -2.39 -0.02 1.22 16 33 H 0.12 3.48 8.04 -2.91 -0.02 3.46 16 34 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.13 2.42 7.13 -2.91 -0.02 2.40 16 37 H 0.05 0.93 7.55 -2.39 -0.02 0.91 16 38 H 0.06 1.61 7.46 -2.39 -0.02 1.59 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.07 1.41 8.11 -2.39 -0.02 1.39 16 46 H 0.05 0.81 7.33 -2.39 -0.02 0.79 16 47 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 48 H 0.07 3.25 8.14 -2.38 -0.02 3.23 16 49 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 50 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -62.52 395.68 1.18 -61.34 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.19 Total: 31.50 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 4.49 Total: -40.56 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -5.53 Total: -99.58 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -62.52 1.18 -61.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797468478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.258 kcal (2) G-P(sol) polarization free energy of solvation -62.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds