Wall clock time and date at job start Tue Mar 31 2020 11:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46579 * 2 1 4 4 C 1.53004 * 109.46778 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46629 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46629 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47451 * 305.00092 * 6 5 4 8 8 N 1.46898 * 109.47183 * 65.00668 * 6 5 4 9 9 C 1.46898 * 110.99934 * 204.99964 * 8 6 5 10 10 C 1.52997 * 109.47390 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.46881 * 54.99442 * 10 9 8 12 12 C 1.47201 * 109.47013 * 295.00280 * 10 9 8 13 13 N 5.81492 * 147.00495 * 253.75058 * 2 1 3 14 14 C 1.52997 * 109.47504 * 174.99803 * 10 9 8 15 15 C 1.50701 * 109.47212 * 184.99949 * 14 10 9 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 10 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 10 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.50705 * 109.46605 * 185.00160 * 6 5 4 24 24 C 1.38229 * 119.99804 * 279.72367 * 23 6 5 25 25 C 1.38246 * 119.99497 * 179.78917 * 24 23 6 26 26 C 1.38237 * 119.99955 * 0.44733 * 25 24 23 27 27 C 1.38235 * 119.99904 * 359.80855 * 26 25 24 28 28 C 1.38227 * 120.00125 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.46718 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47502 * 299.99864 * 1 2 3 31 31 H 1.09003 * 109.47401 * 60.00535 * 1 2 3 32 32 H 1.08999 * 109.47502 * 240.00136 * 2 1 3 33 33 H 1.09003 * 109.47401 * 119.99465 * 2 1 3 34 34 H 1.08999 * 109.47093 * 59.99885 * 3 2 1 35 35 H 1.08999 * 109.47291 * 299.99794 * 3 2 1 36 36 H 1.08999 * 109.47212 * 60.00191 * 4 3 2 37 37 H 1.08999 * 109.47231 * 300.00064 * 4 3 2 38 38 H 1.08999 * 109.46977 * 60.00281 * 5 4 3 39 39 H 1.08999 * 109.47556 * 300.00098 * 5 4 3 40 40 H 1.00902 * 110.99755 * 328.94867 * 8 6 5 41 41 H 1.09003 * 109.47230 * 59.99766 * 9 8 6 42 42 H 1.08998 * 109.46947 * 299.99824 * 9 8 6 43 43 H 1.09002 * 109.47153 * 64.99951 * 14 10 9 44 44 H 1.09001 * 109.46832 * 305.00142 * 14 10 9 45 45 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 46 46 H 1.08000 * 120.00723 * 0.02562 * 24 23 6 47 47 H 1.08004 * 119.99634 * 180.27215 * 25 24 23 48 48 H 1.08001 * 119.99593 * 179.82828 * 26 25 24 49 49 H 1.07999 * 119.99606 * 179.97438 * 27 26 25 50 50 H 1.08004 * 120.00376 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0797 2.8853 0.0000 6 6 5.6098 2.8853 0.0013 7 1 5.9725 2.2965 0.8438 8 7 6.1005 2.2992 -1.2531 9 6 7.4477 1.7395 -1.0810 10 6 7.9236 1.1391 -2.4054 11 1 7.8636 1.8943 -3.1890 12 6 7.0688 -0.0054 -2.7605 13 7 6.4071 -0.8861 -3.0401 14 6 9.3722 0.6683 -2.2607 15 6 9.8807 0.1901 -3.5962 16 1 9.2355 0.2194 -4.4618 17 6 11.1702 -0.2839 -3.7134 18 7 11.9560 -0.3192 -2.6595 19 14 11.8008 -0.8760 -5.3690 20 1 10.7291 -0.7327 -6.3870 21 1 12.9764 -0.0623 -5.7707 22 1 12.1984 -2.3031 -5.2657 23 6 6.1119 4.3009 0.1245 24 6 6.1524 5.1192 -0.9888 25 6 6.6089 6.4191 -0.8748 26 6 7.0334 6.8977 0.3507 27 6 6.9978 6.0776 1.4629 28 6 6.5371 4.7792 1.3498 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 3.9337 0.9288 -0.8891 37 1 3.9329 0.9290 0.8908 38 1 3.7160 3.3995 0.8895 39 1 3.7168 3.3986 -0.8904 40 1 5.4605 1.6009 -1.6006 41 1 7.4232 0.9616 -0.3178 42 1 8.1327 2.5293 -0.7728 43 1 9.4185 -0.1487 -1.5406 44 1 9.9900 1.4957 -1.9117 45 1 12.8631 -0.6531 -2.7418 46 1 5.8240 4.7443 -1.9469 47 1 6.6365 7.0599 -1.7438 48 1 7.3926 7.9124 0.4391 49 1 7.3298 6.4514 2.4202 50 1 6.5096 4.1383 2.2187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819013169.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:09 Heat of formation + Delta-G solvation = 8.896525 kcal Electronic energy + Delta-G solvation = -25499.020561 eV Core-core repulsion = 22103.349858 eV Total energy + Delta-G solvation = -3395.670703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.60914 -37.65924 -36.58234 -35.26904 -33.85368 -32.58156 -31.30357 -30.83366 -30.40751 -27.79860 -26.08992 -24.21266 -22.90913 -22.36310 -21.88641 -21.72266 -21.11500 -20.09232 -16.91659 -16.66848 -16.48849 -16.06973 -15.73361 -15.24714 -15.11164 -14.60505 -14.28400 -13.96590 -13.88714 -13.54284 -13.28422 -13.17493 -13.13026 -12.80128 -12.61243 -12.57784 -12.26884 -12.03729 -11.98710 -11.81195 -11.50401 -11.30312 -11.18862 -11.10786 -11.06322 -11.01900 -10.85542 -10.72470 -10.64143 -10.49390 -10.47700 -10.24533 -9.54766 -9.21183 -8.82184 -8.61490 -8.45591 -8.35995 -6.09047 -4.12047 1.42043 1.51557 3.28682 3.36813 3.41460 3.55902 3.61388 3.84880 4.19192 4.41825 4.50659 4.69940 4.75712 4.80602 4.89474 4.97089 5.02858 5.07045 5.13483 5.21550 5.25237 5.29040 5.39270 5.45176 5.51628 5.58605 5.61275 5.63168 5.69725 5.72814 5.76114 5.80576 5.89396 5.90094 6.05909 6.07469 6.14373 6.15307 6.19850 6.22671 6.36927 6.52374 6.56019 6.61630 6.71227 7.08697 7.16355 7.44176 7.47146 7.53979 7.86168 8.23750 8.39441 8.92750 9.53385 11.01890 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008429 B = 0.003629 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.254971 B = 7714.312853 C =10457.567479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.116 4.116 4 C -0.126 4.126 5 C -0.115 4.115 6 C 0.125 3.875 7 H 0.053 0.947 8 N -0.685 5.685 9 C 0.069 3.931 10 C 0.007 3.993 11 H 0.110 0.890 12 C 0.241 3.759 13 N -0.477 5.477 14 C 0.033 3.967 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.284 1.284 23 C -0.071 4.071 24 C -0.083 4.083 25 C -0.127 4.127 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.119 4.119 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.341 0.659 41 H 0.035 0.965 42 H 0.090 0.910 43 H 0.024 0.976 44 H 0.039 0.961 45 H 0.262 0.738 46 H 0.131 0.869 47 H 0.118 0.882 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.844 11.898 9.803 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.153 4.153 4 C -0.164 4.164 5 C -0.153 4.153 6 C 0.015 3.985 7 H 0.071 0.929 8 N -0.318 5.318 9 C -0.061 4.061 10 C -0.015 4.015 11 H 0.128 0.872 12 C -0.075 4.075 13 N -0.154 5.154 14 C -0.006 4.006 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.210 1.210 23 C -0.072 4.072 24 C -0.102 4.102 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.144 4.144 28 C -0.137 4.137 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.162 0.838 41 H 0.053 0.947 42 H 0.109 0.891 43 H 0.042 0.958 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.149 0.851 47 H 0.136 0.864 48 H 0.134 0.866 49 H 0.135 0.865 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.453 11.101 9.181 22.630 hybrid contribution 0.757 -0.866 -0.281 1.184 sum -16.697 10.235 8.900 21.512 Atomic orbital electron populations 1.21771 0.96035 1.01496 1.01629 1.21557 0.95709 0.97063 1.02214 1.21576 0.95118 0.96693 1.01960 1.21694 0.95732 0.96729 1.02222 1.21756 0.93576 0.96943 1.03002 1.20420 0.94096 0.91997 0.91946 0.92885 1.60577 1.04336 1.38803 1.28096 1.22105 0.89944 0.98087 0.95953 1.19326 0.95277 0.89641 0.97242 0.87188 1.29360 0.91876 0.94152 0.92154 1.81053 1.13005 1.11513 1.09806 1.19157 0.85801 0.97478 0.98154 1.21182 0.97826 1.42568 0.94737 0.92468 1.24955 0.96897 0.95532 0.96624 1.69951 1.07702 1.46486 1.28860 0.86545 0.78908 0.78478 0.84204 1.19669 1.20828 1.21012 1.19808 0.98814 0.95285 0.93269 1.21060 0.97631 0.92578 0.98881 1.21201 0.99708 0.96169 0.97379 1.21107 1.00462 0.99604 0.93196 1.21027 1.00639 0.94215 0.98507 1.21006 0.99645 0.95923 0.97135 0.92893 0.92911 0.92794 0.91869 0.92142 0.92136 0.91930 0.91795 0.92012 0.91256 0.90805 0.83813 0.94722 0.89138 0.95803 0.94245 0.92871 0.85114 0.86389 0.86645 0.86548 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.13 -1.13 5.93 -26.73 -0.16 -1.29 16 3 C -0.12 -1.00 5.21 -26.72 -0.14 -1.14 16 4 C -0.13 -1.21 5.04 -26.73 -0.13 -1.34 16 5 C -0.11 -1.09 4.79 -26.73 -0.13 -1.22 16 6 C 0.13 1.39 2.25 -68.86 -0.15 1.23 16 7 H 0.05 0.60 7.66 -51.93 -0.40 0.21 16 8 N -0.68 -8.76 5.54 -107.95 -0.60 -9.36 16 9 C 0.07 1.03 4.91 -3.83 -0.02 1.01 16 10 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 11 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 12 C 0.24 4.83 12.98 -20.74 -0.27 4.56 16 13 N -0.48 -10.23 18.54 42.17 0.78 -9.44 16 14 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 15 C -0.52 -14.04 8.60 -34.44 -0.30 -14.34 16 16 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 C -0.07 -0.82 4.71 -104.62 -0.49 -1.31 16 24 C -0.08 -0.98 9.33 -39.58 -0.37 -1.35 16 25 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 26 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 27 C -0.13 -1.30 10.05 -39.59 -0.40 -1.70 16 28 C -0.12 -1.29 9.67 -39.58 -0.38 -1.68 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.34 4.49 5.55 -39.29 -0.22 4.27 16 41 H 0.03 0.52 8.05 -51.93 -0.42 0.11 16 42 H 0.09 1.36 8.00 -51.93 -0.42 0.95 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.13 1.54 7.71 -52.49 -0.40 1.14 16 47 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 48 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 49 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 50 H 0.12 1.10 8.04 -52.48 -0.42 0.68 16 LS Contribution 411.35 15.07 6.20 6.20 Total: -1.00 -29.30 411.35 -10.62 -39.92 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.91 Total: 1.88 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -3.82 Total: -20.67 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.92 Total: -43.74 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -29.30 -10.62 -39.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819013169.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.821 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds