Wall clock time and date at job start Tue Mar 31 2020 11:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46579 * 2 1 4 4 C 1.53004 * 109.46778 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46629 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46629 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47451 * 305.00092 * 6 5 4 8 8 N 1.46898 * 109.47183 * 65.00668 * 6 5 4 9 9 C 1.46898 * 110.99934 * 204.99964 * 8 6 5 10 10 C 1.52997 * 109.47390 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.46881 * 54.99442 * 10 9 8 12 12 C 1.47201 * 109.47013 * 295.00280 * 10 9 8 13 13 N 5.81492 * 147.00495 * 253.75058 * 2 1 3 14 14 C 1.52997 * 109.47504 * 174.99803 * 10 9 8 15 15 C 1.50701 * 109.47212 * 184.99949 * 14 10 9 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 10 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 10 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.50705 * 109.46605 * 185.00160 * 6 5 4 24 24 C 1.38229 * 119.99804 * 279.72367 * 23 6 5 25 25 C 1.38246 * 119.99497 * 179.78917 * 24 23 6 26 26 C 1.38237 * 119.99955 * 0.44733 * 25 24 23 27 27 C 1.38235 * 119.99904 * 359.80855 * 26 25 24 28 28 C 1.38227 * 120.00125 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.46718 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47502 * 299.99864 * 1 2 3 31 31 H 1.09003 * 109.47401 * 60.00535 * 1 2 3 32 32 H 1.08999 * 109.47502 * 240.00136 * 2 1 3 33 33 H 1.09003 * 109.47401 * 119.99465 * 2 1 3 34 34 H 1.08999 * 109.47093 * 59.99885 * 3 2 1 35 35 H 1.08999 * 109.47291 * 299.99794 * 3 2 1 36 36 H 1.08999 * 109.47212 * 60.00191 * 4 3 2 37 37 H 1.08999 * 109.47231 * 300.00064 * 4 3 2 38 38 H 1.08999 * 109.46977 * 60.00281 * 5 4 3 39 39 H 1.08999 * 109.47556 * 300.00098 * 5 4 3 40 40 H 1.00902 * 110.99755 * 328.94867 * 8 6 5 41 41 H 1.09003 * 109.47230 * 59.99766 * 9 8 6 42 42 H 1.08998 * 109.46947 * 299.99824 * 9 8 6 43 43 H 1.09002 * 109.47153 * 64.99951 * 14 10 9 44 44 H 1.09001 * 109.46832 * 305.00142 * 14 10 9 45 45 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 46 46 H 1.08000 * 120.00723 * 0.02562 * 24 23 6 47 47 H 1.08004 * 119.99634 * 180.27215 * 25 24 23 48 48 H 1.08001 * 119.99593 * 179.82828 * 26 25 24 49 49 H 1.07999 * 119.99606 * 179.97438 * 27 26 25 50 50 H 1.08004 * 120.00376 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0797 2.8853 0.0000 6 6 5.6098 2.8853 0.0013 7 1 5.9725 2.2965 0.8438 8 7 6.1005 2.2992 -1.2531 9 6 7.4477 1.7395 -1.0810 10 6 7.9236 1.1391 -2.4054 11 1 7.8636 1.8943 -3.1890 12 6 7.0688 -0.0054 -2.7605 13 7 6.4071 -0.8861 -3.0401 14 6 9.3722 0.6683 -2.2607 15 6 9.8807 0.1901 -3.5962 16 1 9.2355 0.2194 -4.4618 17 6 11.1702 -0.2839 -3.7134 18 7 11.9560 -0.3192 -2.6595 19 14 11.8008 -0.8760 -5.3690 20 1 10.7291 -0.7327 -6.3870 21 1 12.9764 -0.0623 -5.7707 22 1 12.1984 -2.3031 -5.2657 23 6 6.1119 4.3009 0.1245 24 6 6.1524 5.1192 -0.9888 25 6 6.6089 6.4191 -0.8748 26 6 7.0334 6.8977 0.3507 27 6 6.9978 6.0776 1.4629 28 6 6.5371 4.7792 1.3498 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 3.9337 0.9288 -0.8891 37 1 3.9329 0.9290 0.8908 38 1 3.7160 3.3995 0.8895 39 1 3.7168 3.3986 -0.8904 40 1 5.4605 1.6009 -1.6006 41 1 7.4232 0.9616 -0.3178 42 1 8.1327 2.5293 -0.7728 43 1 9.4185 -0.1487 -1.5406 44 1 9.9900 1.4957 -1.9117 45 1 12.8631 -0.6531 -2.7418 46 1 5.8240 4.7443 -1.9469 47 1 6.6365 7.0599 -1.7438 48 1 7.3926 7.9124 0.4391 49 1 7.3298 6.4514 2.4202 50 1 6.5096 4.1383 2.2187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819013169.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:09 Heat of formation + Delta-G solvation = -3.402673 kcal Electronic energy + Delta-G solvation = -25499.553894 eV Core-core repulsion = 22103.349858 eV Total energy + Delta-G solvation = -3396.204036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.48635 -38.84358 -37.72750 -36.32124 -35.54511 -34.15264 -32.26250 -31.75531 -31.50083 -28.87881 -27.58856 -25.11621 -24.26380 -23.58187 -23.22496 -22.55579 -21.84333 -20.96899 -18.56700 -18.28521 -17.54355 -16.95440 -16.83902 -16.57828 -16.08279 -15.99127 -15.19824 -14.99181 -14.80298 -14.63087 -14.51807 -14.37779 -14.13133 -13.99795 -13.92840 -13.68750 -13.54964 -13.40618 -13.09694 -12.93174 -12.82361 -12.64036 -12.49297 -12.41269 -12.29676 -12.09162 -11.88208 -11.84112 -11.78917 -11.65093 -11.42280 -11.36448 -11.24768 -11.12060 -10.56725 -9.64252 -9.46811 -9.40750 -8.20385 -6.28755 0.59995 0.69353 1.38418 1.41129 1.51814 1.92747 1.95144 2.40622 3.00100 3.14523 3.17446 3.23424 3.70928 3.91045 3.98352 4.15739 4.16436 4.21056 4.29774 4.32391 4.37350 4.40671 4.46054 4.47794 4.66009 4.67052 4.75851 4.79913 4.83101 4.89244 4.90477 4.94549 4.99068 5.01875 5.09219 5.16521 5.23675 5.27846 5.35076 5.35622 5.42941 5.45915 5.49249 5.60358 5.72557 5.77333 5.79276 5.80484 6.12016 6.21339 6.27719 6.39478 6.74065 6.86319 7.39905 8.90827 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008429 B = 0.003629 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.254971 B = 7714.312853 C =10457.567479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.111 4.111 4 C -0.122 4.122 5 C -0.105 4.105 6 C 0.128 3.872 7 H 0.053 0.947 8 N -0.681 5.681 9 C 0.083 3.917 10 C 0.020 3.980 11 H 0.121 0.879 12 C 0.251 3.749 13 N -0.500 5.500 14 C 0.040 3.960 15 C -0.537 4.537 16 H 0.054 0.946 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.949 3.051 20 H -0.269 1.269 21 H -0.273 1.273 22 H -0.284 1.284 23 C -0.081 4.081 24 C -0.098 4.098 25 C -0.136 4.136 26 C -0.132 4.132 27 C -0.131 4.131 28 C -0.129 4.129 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.340 0.660 41 H 0.033 0.967 42 H 0.093 0.907 43 H 0.000 1.000 44 H 0.032 0.968 45 H 0.264 0.736 46 H 0.125 0.875 47 H 0.131 0.869 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.578 13.088 10.085 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.149 4.149 4 C -0.160 4.160 5 C -0.143 4.143 6 C 0.018 3.982 7 H 0.071 0.929 8 N -0.314 5.314 9 C -0.047 4.047 10 C -0.002 4.002 11 H 0.139 0.861 12 C -0.065 4.065 13 N -0.177 5.177 14 C 0.001 3.999 15 C -0.576 4.576 16 H 0.073 0.927 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.775 3.225 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.210 1.210 23 C -0.082 4.082 24 C -0.116 4.116 25 C -0.154 4.154 26 C -0.150 4.150 27 C -0.149 4.149 28 C -0.147 4.147 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.160 0.840 41 H 0.051 0.949 42 H 0.111 0.889 43 H 0.018 0.982 44 H 0.050 0.950 45 H 0.073 0.927 46 H 0.143 0.857 47 H 0.149 0.851 48 H 0.153 0.847 49 H 0.154 0.846 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.201 12.300 9.461 23.918 hybrid contribution 0.981 -1.206 -0.338 1.591 sum -17.220 11.095 9.123 22.424 Atomic orbital electron populations 1.21761 0.95068 1.01821 1.02134 1.21564 0.96609 0.97099 1.01458 1.21540 0.94243 0.96602 1.02505 1.21648 0.96507 0.96560 1.01285 1.21675 0.92307 0.96860 1.03441 1.20451 0.95100 0.91785 0.90827 0.92919 1.60530 1.03245 1.38312 1.29340 1.21873 0.91272 0.97904 0.93669 1.19185 0.92255 0.89218 0.99497 0.86103 1.29607 0.91537 0.93991 0.91404 1.81054 1.13837 1.12075 1.10777 1.18963 0.88656 0.96283 0.96004 1.21570 0.97923 1.42116 0.95956 0.92746 1.25726 0.97395 0.95932 0.99775 1.70043 1.08089 1.47563 1.30658 0.85631 0.78567 0.77880 0.80428 1.19304 1.19835 1.21048 1.19867 0.99403 0.95268 0.93654 1.21119 0.98484 0.93242 0.98795 1.21436 0.99547 0.96102 0.98313 1.21413 0.99997 1.00638 0.92936 1.21338 1.00068 0.94019 0.99492 1.21226 0.99608 0.96558 0.97317 0.92710 0.92029 0.92647 0.93317 0.92239 0.91001 0.91887 0.93514 0.92129 0.90075 0.91004 0.83959 0.94913 0.88889 0.98171 0.94971 0.92716 0.85682 0.85106 0.84662 0.84576 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.13 -2.21 5.93 30.60 0.18 -2.03 16 3 C -0.11 -1.79 5.21 30.60 0.16 -1.63 16 4 C -0.12 -2.24 5.04 30.60 0.15 -2.09 16 5 C -0.11 -1.86 4.79 30.60 0.15 -1.72 16 6 C 0.13 2.70 2.25 44.17 0.10 2.80 16 7 H 0.05 1.14 7.66 -2.39 -0.02 1.12 16 8 N -0.68 -16.97 5.54 -495.44 -2.74 -19.72 16 9 C 0.08 2.45 4.91 86.30 0.42 2.87 16 10 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 11 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 12 C 0.25 9.99 12.98 89.44 1.16 11.15 16 13 N -0.50 -21.39 18.54 20.01 0.37 -21.02 16 14 C 0.04 1.87 4.42 29.85 0.13 2.00 16 15 C -0.54 -28.79 8.60 25.60 0.22 -28.57 16 16 H 0.05 2.89 7.59 -2.91 -0.02 2.87 16 17 C 0.01 0.59 5.46 84.66 0.46 1.05 16 18 N -0.92 -53.54 13.29 21.45 0.28 -53.26 16 19 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 23 C -0.08 -1.78 4.71 -19.86 -0.09 -1.87 16 24 C -0.10 -2.21 9.33 22.27 0.21 -2.01 16 25 C -0.14 -2.78 10.05 22.27 0.22 -2.55 16 26 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 27 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 28 C -0.13 -2.60 9.67 22.27 0.22 -2.38 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.02 6.43 -2.39 -0.02 1.01 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.34 8.79 5.55 -89.69 -0.50 8.29 16 41 H 0.03 0.98 8.05 -2.39 -0.02 0.96 16 42 H 0.09 2.74 8.00 -2.39 -0.02 2.72 16 43 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 46 H 0.13 2.88 7.71 -2.91 -0.02 2.86 16 47 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 48 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 49 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 50 H 0.13 2.19 8.04 -2.91 -0.02 2.17 16 Total: -1.00 -61.52 411.35 5.15 -56.37 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.39 Total: 21.99 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 4.82 Total: -30.18 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -2.09 Total: -93.99 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -61.52 5.15 -56.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819013169.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.967 kcal (2) G-P(sol) polarization free energy of solvation -61.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds