Wall clock time and date at job start Tue Mar 31 2020 11:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47218 * 2 1 4 4 C 1.53001 * 109.47218 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47184 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47184 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47117 * 304.99790 * 6 5 4 8 8 N 1.46896 * 109.47252 * 64.99997 * 6 5 4 9 9 C 1.46897 * 111.00314 * 205.00070 * 8 6 5 10 10 C 1.52994 * 109.47430 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47092 * 305.00017 * 10 9 8 12 12 C 1.47197 * 109.47007 * 64.99993 * 10 9 8 13 13 N 8.42380 * 142.16563 * 306.03523 * 2 1 3 14 14 C 1.53001 * 109.47220 * 184.99693 * 10 9 8 15 15 C 1.50697 * 109.46988 * 174.99915 * 14 10 9 16 16 H 1.07999 * 120.00038 * 0.02562 * 15 14 10 17 17 C 1.37882 * 119.99841 * 180.02562 * 15 14 10 18 18 N 1.31508 * 120.00049 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99923 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46924 * 90.00198 * 19 17 15 21 21 H 1.48501 * 109.47033 * 209.99839 * 19 17 15 22 22 H 1.48498 * 109.47318 * 330.00015 * 19 17 15 23 23 C 1.50703 * 109.46987 * 185.00436 * 6 5 4 24 24 C 1.38235 * 120.00292 * 99.99885 * 23 6 5 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 6 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 279.97178 * 23 6 5 29 29 H 1.09001 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47136 * 299.99981 * 1 2 3 31 31 H 1.09000 * 109.47281 * 60.00273 * 1 2 3 32 32 H 1.09001 * 109.46807 * 239.99808 * 2 1 3 33 33 H 1.08998 * 109.47120 * 120.00244 * 2 1 3 34 34 H 1.09000 * 109.46923 * 59.99550 * 3 2 1 35 35 H 1.09000 * 109.46772 * 300.00039 * 3 2 1 36 36 H 1.09001 * 109.46807 * 59.99808 * 4 3 2 37 37 H 1.08995 * 109.46654 * 300.00043 * 4 3 2 38 38 H 1.09007 * 109.47097 * 59.99866 * 5 4 3 39 39 H 1.08998 * 109.47470 * 300.00248 * 5 4 3 40 40 H 1.00896 * 110.99881 * 328.95442 * 8 6 5 41 41 H 1.09000 * 109.46944 * 300.00492 * 9 8 6 42 42 H 1.09000 * 109.46941 * 59.99682 * 9 8 6 43 43 H 1.08991 * 109.47392 * 295.00352 * 14 10 9 44 44 H 1.09007 * 109.46861 * 55.00682 * 14 10 9 45 45 H 0.96997 * 120.00012 * 180.02562 * 18 17 15 46 46 H 1.08001 * 119.99730 * 359.97438 * 24 23 6 47 47 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 49 49 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 50 50 H 1.07997 * 120.00455 * 0.02562 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.6100 2.8849 -0.0013 7 1 5.9734 2.2959 0.8408 8 7 6.0997 2.2991 -1.2562 9 6 7.4470 1.7392 -1.0854 10 6 7.9217 1.1391 -2.4103 11 1 7.1903 0.4117 -2.7624 12 6 8.0689 2.2101 -3.4092 13 7 8.1830 3.0397 -4.1783 14 6 9.2702 0.4467 -2.2025 15 6 9.6792 -0.2488 -3.4752 16 1 9.0413 -0.2014 -4.3455 17 6 10.8677 -0.9457 -3.5288 18 7 11.6446 -1.0030 -2.4693 19 14 11.3750 -1.8072 -5.1067 20 1 12.1707 -0.8753 -5.9456 21 1 12.1956 -3.0003 -4.7775 22 1 10.1621 -2.2308 -5.8514 23 6 6.1124 4.3004 0.1220 24 6 6.5387 4.7783 1.3470 25 6 6.9999 6.0765 1.4600 26 6 7.0357 6.8966 0.3477 27 6 6.6106 6.4182 -0.8776 28 6 6.1472 5.1207 -0.9901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9329 0.9288 -0.8909 37 1 3.9337 0.9285 0.8891 38 1 3.7170 3.3991 0.8887 39 1 3.7163 3.3986 -0.8912 40 1 5.4594 1.6009 -1.6034 41 1 8.1323 2.5289 -0.7775 42 1 7.4231 0.9612 -0.3224 43 1 10.0225 1.1890 -1.9361 44 1 9.1826 -0.2860 -1.4001 45 1 12.4809 -1.4929 -2.5071 46 1 6.5114 4.1374 2.2159 47 1 7.3327 6.4501 2.4171 48 1 7.3918 7.9123 0.4368 49 1 6.6381 7.0590 -1.7466 50 1 5.8142 4.7473 -1.9472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819013170.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:12 Heat of formation + Delta-G solvation = 9.173999 kcal Electronic energy + Delta-G solvation = -25501.073358 eV Core-core repulsion = 22105.414687 eV Total energy + Delta-G solvation = -3395.658670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.58909 -37.59308 -36.53023 -35.24519 -33.76764 -32.58393 -31.30840 -30.81275 -30.38256 -27.80375 -26.09517 -24.22076 -22.88724 -22.34849 -21.86138 -21.69354 -21.13418 -20.10094 -17.05048 -16.75194 -16.46941 -16.07130 -15.47229 -15.22233 -14.92606 -14.58015 -14.29463 -14.02763 -13.84852 -13.70161 -13.43693 -13.25455 -12.89685 -12.73891 -12.73399 -12.38065 -12.13930 -12.02546 -11.90972 -11.72618 -11.55360 -11.34609 -11.16890 -11.08931 -11.04462 -11.02426 -10.84856 -10.69521 -10.63508 -10.51289 -10.46810 -10.21249 -9.53661 -9.22099 -8.80046 -8.59631 -8.45648 -8.32338 -6.09048 -4.12180 1.43951 1.53681 3.30071 3.36663 3.39724 3.76437 3.85347 3.87227 4.19703 4.41636 4.49432 4.68022 4.74754 4.88035 4.92809 4.98247 5.02360 5.08415 5.12963 5.21495 5.26001 5.29110 5.38091 5.44831 5.50010 5.59253 5.62095 5.63317 5.71766 5.73487 5.77099 5.79307 5.87147 5.89586 6.03202 6.05598 6.09063 6.13168 6.17725 6.21083 6.41987 6.49776 6.55070 6.64494 6.72851 7.10851 7.17466 7.42945 7.51390 7.55319 7.86204 8.23815 8.61587 8.92656 9.53230 11.01860 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008270 B = 0.003580 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.074467 B = 7819.753849 C =10285.900144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.125 4.125 5 C -0.115 4.115 6 C 0.127 3.873 7 H 0.054 0.946 8 N -0.687 5.687 9 C 0.068 3.932 10 C 0.010 3.990 11 H 0.098 0.902 12 C 0.255 3.745 13 N -0.479 5.479 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.073 4.073 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.126 4.126 27 C -0.127 4.127 28 C -0.082 4.082 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.344 0.656 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.025 0.975 44 H 0.037 0.963 45 H 0.262 0.738 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.793 7.448 11.081 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.163 4.163 5 C -0.153 4.153 6 C 0.017 3.983 7 H 0.072 0.928 8 N -0.320 5.320 9 C -0.062 4.062 10 C -0.012 4.012 11 H 0.116 0.884 12 C -0.061 4.061 13 N -0.156 5.156 14 C -0.006 4.006 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.073 4.073 24 C -0.137 4.137 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.145 4.145 28 C -0.100 4.100 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.164 0.836 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.055 0.945 45 H 0.072 0.928 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.135 0.865 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.240 9.204 9.730 22.630 hybrid contribution 0.365 -1.586 -0.058 1.629 sum -17.876 7.618 9.672 21.705 Atomic orbital electron populations 1.21778 0.96115 1.01490 1.01654 1.21550 0.95667 0.97041 1.02180 1.21588 0.95252 0.96681 1.01981 1.21688 0.95583 0.96676 1.02307 1.21750 0.93549 0.97035 1.02955 1.20398 0.94056 0.91890 0.91908 0.92774 1.60503 1.04231 1.39025 1.28222 1.22097 0.89691 0.98301 0.96115 1.19203 1.03005 0.90603 0.88397 0.88429 1.28876 0.91088 0.93012 0.93169 1.81016 1.10915 1.12271 1.11371 1.19154 0.87958 0.95336 0.98195 1.21142 1.05344 1.32301 0.97609 0.92511 1.24953 0.96383 0.96328 0.96304 1.69936 1.12321 1.42118 1.28642 0.86600 0.78739 0.79151 0.83635 1.20645 1.21115 1.19735 1.19830 0.98891 0.95421 0.93195 1.20998 0.99729 0.95914 0.97104 1.21025 1.00718 0.94270 0.98457 1.21100 1.00503 0.99606 0.93157 1.21204 0.99596 0.96284 0.97376 1.21050 0.97518 0.92611 0.98810 0.92889 0.92941 0.92802 0.91838 0.92098 0.92204 0.91965 0.91536 0.91909 0.91361 0.90899 0.83576 0.90572 0.93281 0.95623 0.94515 0.92811 0.86516 0.86519 0.86650 0.86510 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.08 16 3 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 4 C -0.12 -0.99 5.04 -26.73 -0.13 -1.13 16 5 C -0.12 -1.03 4.78 -26.73 -0.13 -1.15 16 6 C 0.13 1.38 2.25 -68.86 -0.15 1.23 16 7 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 8 N -0.69 -8.54 5.25 -107.96 -0.57 -9.11 16 9 C 0.07 1.00 4.84 -3.83 -0.02 0.98 16 10 C 0.01 0.18 2.35 -93.41 -0.22 -0.04 16 11 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 12 C 0.26 5.33 13.67 -20.73 -0.28 5.05 16 13 N -0.48 -10.86 18.54 42.19 0.78 -10.08 16 14 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 15 C -0.53 -14.03 8.60 -34.44 -0.30 -14.32 16 16 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.07 -0.90 4.71 -104.62 -0.49 -1.39 16 24 C -0.12 -1.37 9.67 -39.59 -0.38 -1.76 16 25 C -0.13 -1.42 10.05 -39.59 -0.40 -1.82 16 26 C -0.13 -1.46 10.05 -39.58 -0.40 -1.85 16 27 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 28 C -0.08 -1.10 9.32 -39.58 -0.37 -1.47 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.55 6.43 -51.93 -0.33 0.22 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.34 3.82 6.47 -39.29 -0.25 3.56 16 41 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 42 H 0.05 0.67 8.06 -51.93 -0.42 0.25 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16 47 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 49 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 50 H 0.13 1.84 7.72 -52.49 -0.41 1.43 16 LS Contribution 412.55 15.07 6.22 6.22 Total: -1.00 -30.17 412.55 -10.62 -40.79 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -8.94 Total: 0.91 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -3.82 Total: -20.18 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.95 Total: -44.09 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -30.17 -10.62 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819013170.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.960 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds