Wall clock time and date at job start Tue Mar 31 2020 11:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47218 * 2 1 4 4 C 1.53001 * 109.47218 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47184 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47184 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47117 * 304.99790 * 6 5 4 8 8 N 1.46896 * 109.47252 * 64.99997 * 6 5 4 9 9 C 1.46897 * 111.00314 * 205.00070 * 8 6 5 10 10 C 1.52994 * 109.47430 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47092 * 305.00017 * 10 9 8 12 12 C 1.47197 * 109.47007 * 64.99993 * 10 9 8 13 13 N 8.42380 * 142.16563 * 306.03523 * 2 1 3 14 14 C 1.53001 * 109.47220 * 184.99693 * 10 9 8 15 15 C 1.50697 * 109.46988 * 174.99915 * 14 10 9 16 16 H 1.07999 * 120.00038 * 0.02562 * 15 14 10 17 17 C 1.37882 * 119.99841 * 180.02562 * 15 14 10 18 18 N 1.31508 * 120.00049 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99923 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46924 * 90.00198 * 19 17 15 21 21 H 1.48501 * 109.47033 * 209.99839 * 19 17 15 22 22 H 1.48498 * 109.47318 * 330.00015 * 19 17 15 23 23 C 1.50703 * 109.46987 * 185.00436 * 6 5 4 24 24 C 1.38235 * 120.00292 * 99.99885 * 23 6 5 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 6 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 279.97178 * 23 6 5 29 29 H 1.09001 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47136 * 299.99981 * 1 2 3 31 31 H 1.09000 * 109.47281 * 60.00273 * 1 2 3 32 32 H 1.09001 * 109.46807 * 239.99808 * 2 1 3 33 33 H 1.08998 * 109.47120 * 120.00244 * 2 1 3 34 34 H 1.09000 * 109.46923 * 59.99550 * 3 2 1 35 35 H 1.09000 * 109.46772 * 300.00039 * 3 2 1 36 36 H 1.09001 * 109.46807 * 59.99808 * 4 3 2 37 37 H 1.08995 * 109.46654 * 300.00043 * 4 3 2 38 38 H 1.09007 * 109.47097 * 59.99866 * 5 4 3 39 39 H 1.08998 * 109.47470 * 300.00248 * 5 4 3 40 40 H 1.00896 * 110.99881 * 328.95442 * 8 6 5 41 41 H 1.09000 * 109.46944 * 300.00492 * 9 8 6 42 42 H 1.09000 * 109.46941 * 59.99682 * 9 8 6 43 43 H 1.08991 * 109.47392 * 295.00352 * 14 10 9 44 44 H 1.09007 * 109.46861 * 55.00682 * 14 10 9 45 45 H 0.96997 * 120.00012 * 180.02562 * 18 17 15 46 46 H 1.08001 * 119.99730 * 359.97438 * 24 23 6 47 47 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 49 49 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 50 50 H 1.07997 * 120.00455 * 0.02562 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.6100 2.8849 -0.0013 7 1 5.9734 2.2959 0.8408 8 7 6.0997 2.2991 -1.2562 9 6 7.4470 1.7392 -1.0854 10 6 7.9217 1.1391 -2.4103 11 1 7.1903 0.4117 -2.7624 12 6 8.0689 2.2101 -3.4092 13 7 8.1830 3.0397 -4.1783 14 6 9.2702 0.4467 -2.2025 15 6 9.6792 -0.2488 -3.4752 16 1 9.0413 -0.2014 -4.3455 17 6 10.8677 -0.9457 -3.5288 18 7 11.6446 -1.0030 -2.4693 19 14 11.3750 -1.8072 -5.1067 20 1 12.1707 -0.8753 -5.9456 21 1 12.1956 -3.0003 -4.7775 22 1 10.1621 -2.2308 -5.8514 23 6 6.1124 4.3004 0.1220 24 6 6.5387 4.7783 1.3470 25 6 6.9999 6.0765 1.4600 26 6 7.0357 6.8966 0.3477 27 6 6.6106 6.4182 -0.8776 28 6 6.1472 5.1207 -0.9901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9329 0.9288 -0.8909 37 1 3.9337 0.9285 0.8891 38 1 3.7170 3.3991 0.8887 39 1 3.7163 3.3986 -0.8912 40 1 5.4594 1.6009 -1.6034 41 1 8.1323 2.5289 -0.7775 42 1 7.4231 0.9612 -0.3224 43 1 10.0225 1.1890 -1.9361 44 1 9.1826 -0.2860 -1.4001 45 1 12.4809 -1.4929 -2.5071 46 1 6.5114 4.1374 2.2159 47 1 7.3327 6.4501 2.4171 48 1 7.3918 7.9123 0.4368 49 1 6.6381 7.0590 -1.7466 50 1 5.8142 4.7473 -1.9472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819013170.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:11 Heat of formation + Delta-G solvation = -4.056957 kcal Electronic energy + Delta-G solvation = -25501.647095 eV Core-core repulsion = 22105.414687 eV Total energy + Delta-G solvation = -3396.232408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.50509 -38.74806 -37.68161 -36.25040 -35.47957 -34.12204 -32.19979 -31.80557 -31.55512 -28.85813 -27.55655 -25.08877 -24.26006 -23.53430 -23.25965 -22.52435 -21.74455 -20.98389 -18.62828 -18.32817 -17.65182 -16.92796 -16.57100 -16.36130 -16.05452 -15.97332 -15.25366 -15.18116 -14.79325 -14.57904 -14.47236 -14.29178 -14.16707 -14.00733 -13.74130 -13.61019 -13.57018 -13.30525 -13.06713 -12.94551 -12.84498 -12.59128 -12.49641 -12.40705 -12.26045 -11.96959 -11.89298 -11.82175 -11.74505 -11.60059 -11.38001 -11.28925 -11.20804 -11.09192 -10.55875 -9.72866 -9.50994 -9.32321 -8.19357 -6.27626 0.52843 0.60702 1.39776 1.42188 1.51205 2.09198 2.15655 2.41473 2.94314 3.15790 3.20226 3.38351 3.75614 3.96839 4.06866 4.13501 4.22085 4.23485 4.26902 4.34457 4.37337 4.40642 4.48807 4.53283 4.67241 4.73254 4.77722 4.80680 4.82860 4.85210 4.93003 5.00084 5.04022 5.12022 5.15580 5.21588 5.23692 5.27822 5.32888 5.43841 5.46828 5.53085 5.59187 5.61934 5.64831 5.70763 5.74037 5.79799 6.13162 6.20761 6.24216 6.59029 6.83921 6.95541 7.40975 8.91626 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008270 B = 0.003580 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.074467 B = 7819.753849 C =10285.900144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.120 4.120 5 C -0.105 4.105 6 C 0.131 3.869 7 H 0.063 0.937 8 N -0.691 5.691 9 C 0.083 3.917 10 C 0.021 3.979 11 H 0.121 0.879 12 C 0.265 3.735 13 N -0.513 5.513 14 C 0.039 3.961 15 C -0.538 4.538 16 H 0.055 0.945 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.948 3.052 20 H -0.285 1.285 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.081 4.081 24 C -0.126 4.126 25 C -0.130 4.130 26 C -0.133 4.133 27 C -0.144 4.144 28 C -0.102 4.102 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.353 0.647 41 H 0.058 0.942 42 H 0.068 0.932 43 H -0.004 1.004 44 H 0.036 0.964 45 H 0.264 0.736 46 H 0.137 0.863 47 H 0.141 0.859 48 H 0.135 0.865 49 H 0.120 0.880 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.930 6.965 12.049 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.158 4.158 5 C -0.143 4.143 6 C 0.022 3.978 7 H 0.081 0.919 8 N -0.326 5.326 9 C -0.047 4.047 10 C -0.001 4.001 11 H 0.139 0.861 12 C -0.051 4.051 13 N -0.191 5.191 14 C 0.000 4.000 15 C -0.576 4.576 16 H 0.073 0.927 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.773 3.227 20 H -0.212 1.212 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.082 4.082 24 C -0.145 4.145 25 C -0.148 4.148 26 C -0.151 4.151 27 C -0.162 4.162 28 C -0.120 4.120 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.175 0.825 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.014 0.986 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.155 0.845 47 H 0.159 0.841 48 H 0.153 0.847 49 H 0.138 0.862 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.401 8.719 10.694 23.807 hybrid contribution 0.715 -1.386 -0.334 1.595 sum -18.686 7.333 10.360 22.589 Atomic orbital electron populations 1.21781 0.95738 1.01748 1.01809 1.21549 0.96039 0.96858 1.02026 1.21550 0.94814 0.96792 1.02013 1.21648 0.95914 0.95846 1.02390 1.21654 0.92029 0.97727 1.02855 1.20432 0.95175 0.91020 0.91197 0.91874 1.60381 1.03378 1.39240 1.29573 1.21840 0.90599 0.98112 0.94187 1.19178 1.01042 0.90221 0.89686 0.86088 1.29391 0.90146 0.92817 0.92786 1.81013 1.11859 1.13548 1.12680 1.18967 0.89701 0.94536 0.96752 1.21556 1.05304 1.32022 0.98725 0.92685 1.25718 0.96702 0.97292 0.99080 1.70032 1.12787 1.43157 1.30396 0.85706 0.78616 0.78169 0.80173 1.21166 1.20337 1.18662 1.20029 0.98939 0.95987 0.93245 1.21296 0.99255 0.96491 0.97411 1.21386 0.99876 0.94133 0.99356 1.21382 1.00181 1.00734 0.92817 1.21391 1.00157 0.96340 0.98315 1.21029 0.98907 0.93396 0.98682 0.92611 0.92560 0.92893 0.92286 0.91949 0.91790 0.92327 0.91774 0.91440 0.90638 0.91809 0.82478 0.92356 0.91361 0.98589 0.94614 0.92736 0.84542 0.84100 0.84707 0.86196 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.13 -1.66 5.93 30.59 0.18 -1.48 16 3 C -0.11 -1.50 5.21 30.59 0.16 -1.34 16 4 C -0.12 -1.68 5.04 30.59 0.15 -1.52 16 5 C -0.10 -1.70 4.78 30.59 0.15 -1.55 16 6 C 0.13 2.64 2.25 44.17 0.10 2.74 16 7 H 0.06 1.19 7.66 -2.39 -0.02 1.17 16 8 N -0.69 -16.33 5.25 -495.47 -2.60 -18.93 16 9 C 0.08 2.35 4.84 86.30 0.42 2.77 16 10 C 0.02 0.73 2.35 -12.60 -0.03 0.70 16 11 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 12 C 0.26 11.02 13.67 89.43 1.22 12.25 16 13 N -0.51 -23.46 18.54 20.02 0.37 -23.09 16 14 C 0.04 1.82 4.42 29.85 0.13 1.95 16 15 C -0.54 -28.56 8.60 25.60 0.22 -28.34 16 16 H 0.05 2.88 7.59 -2.91 -0.02 2.86 16 17 C 0.01 0.60 5.46 84.66 0.46 1.07 16 18 N -0.92 -53.34 13.29 21.45 0.28 -53.05 16 19 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 23 C -0.08 -1.93 4.71 -19.87 -0.09 -2.02 16 24 C -0.13 -2.69 9.67 22.27 0.22 -2.47 16 25 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 26 C -0.13 -2.95 10.05 22.27 0.22 -2.72 16 27 C -0.14 -3.68 10.05 22.27 0.22 -3.46 16 28 C -0.10 -2.76 9.32 22.27 0.21 -2.56 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.93 6.43 -2.39 -0.02 0.92 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.35 7.22 6.47 -89.70 -0.58 6.63 16 41 H 0.06 1.88 8.00 -2.39 -0.02 1.87 16 42 H 0.07 1.70 8.06 -2.39 -0.02 1.68 16 43 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 46 H 0.14 2.30 8.04 -2.91 -0.02 2.27 16 47 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 48 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 49 H 0.12 2.83 8.06 -2.91 -0.02 2.80 16 50 H 0.11 3.32 7.72 -2.91 -0.02 3.29 16 Total: -1.00 -64.42 412.55 5.27 -59.15 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.31 Total: 19.91 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 4.88 Total: -29.56 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -1.95 Total: -95.07 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -64.42 5.27 -59.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819013170.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.093 kcal (2) G-P(sol) polarization free energy of solvation -64.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds