Wall clock time and date at job start Tue Mar 31 2020 11:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38123 * 120.03240 * 2 1 4 4 C 1.38272 * 120.07106 * 180.25477 * 3 2 1 5 5 C 1.50705 * 119.92249 * 179.70541 * 4 3 2 6 6 N 1.46503 * 109.46795 * 89.99923 * 5 4 3 7 7 C 1.36933 * 119.99819 * 90.00134 * 6 5 4 8 8 H 1.07998 * 120.00220 * 218.10350 * 7 6 5 9 9 C 1.38818 * 120.00297 * 38.09824 * 7 6 5 10 10 N 1.31621 * 119.99770 * 20.49620 * 9 7 6 11 11 Si 1.86800 * 120.00125 * 200.49087 * 9 7 6 12 12 H 1.48497 * 109.47054 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46636 * 120.00246 * 11 9 7 14 14 H 1.48499 * 109.47299 * 240.00095 * 11 9 7 15 15 C 1.46496 * 119.99914 * 269.99139 * 6 5 4 16 16 C 1.53003 * 117.49814 * 194.01186 * 15 6 5 17 17 C 1.53010 * 117.49342 * 125.35754 * 15 6 5 18 18 C 1.38308 * 120.14901 * 359.44803 * 4 3 2 19 19 C 1.38089 * 120.07259 * 0.55447 * 18 4 3 20 20 C 1.38888 * 120.03804 * 179.97438 * 2 1 3 21 21 N 1.39668 * 120.07399 * 359.97438 * 20 2 1 22 22 C 1.46850 * 111.00059 * 244.21215 * 21 20 2 23 23 C 1.53037 * 109.52215 * 174.16460 * 22 21 20 24 24 C 1.53120 * 109.28150 * 59.18024 * 23 22 21 25 25 C 1.53112 * 109.15889 * 302.34473 * 24 23 22 26 26 C 1.46845 * 110.99940 * 120.00651 * 21 20 2 27 27 H 1.08998 * 109.47257 * 89.99718 * 1 2 3 28 28 H 1.09003 * 109.46843 * 209.99715 * 1 2 3 29 29 H 1.08994 * 109.47207 * 329.99758 * 1 2 3 30 30 H 1.07996 * 119.96843 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.46590 * 209.99456 * 5 4 3 32 32 H 1.08993 * 109.47093 * 329.99738 * 5 4 3 33 33 H 0.96999 * 120.00033 * 174.95839 * 10 9 7 34 34 H 1.09000 * 115.55540 * 339.69406 * 15 6 5 35 35 H 1.08997 * 117.49767 * 0.02562 * 16 15 6 36 36 H 1.09003 * 117.49533 * 145.02329 * 16 15 6 37 37 H 1.09000 * 117.49956 * 214.97865 * 17 15 6 38 38 H 1.08999 * 117.49725 * 359.97438 * 17 15 6 39 39 H 1.07992 * 119.96413 * 180.27918 * 18 4 3 40 40 H 1.07995 * 120.03223 * 179.70139 * 19 18 4 41 41 H 1.09000 * 109.46546 * 294.17784 * 22 21 20 42 42 H 1.08998 * 109.46006 * 54.14727 * 22 21 20 43 43 H 1.08997 * 109.50217 * 299.23504 * 23 22 21 44 44 H 1.09005 * 109.53015 * 179.14172 * 23 22 21 45 45 H 1.08998 * 109.52617 * 182.43822 * 24 23 22 46 46 H 1.09000 * 109.57299 * 62.28040 * 24 23 22 47 47 H 1.09004 * 109.50574 * 297.71504 * 25 24 23 48 48 H 1.09003 * 109.53902 * 177.61021 * 25 24 23 49 49 H 1.09003 * 109.46337 * 305.85423 * 26 21 20 50 50 H 1.08999 * 109.46756 * 65.82818 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1967 -0.0053 5 6 4.3319 2.5034 -0.0120 6 7 4.5805 2.9308 1.3671 7 6 5.7249 2.5397 2.0093 8 1 5.6949 2.2834 3.0580 9 6 6.9236 2.4724 1.3124 10 7 7.0703 3.1428 0.1893 11 14 8.3283 1.4305 1.9687 12 1 7.9122 0.7815 3.2379 13 1 8.6787 0.3875 0.9715 14 1 9.5105 2.2939 2.2181 15 6 3.6048 3.7767 2.0589 16 6 4.0526 4.4575 3.3539 17 6 3.0716 3.2836 3.4056 18 6 4.2766 0.0013 0.0009 19 6 3.5916 -1.1978 0.0008 20 6 2.2023 -1.2023 0.0005 21 7 1.5063 -2.4133 0.0016 22 6 1.7617 -3.1659 1.2364 23 6 0.8745 -4.4125 1.2683 24 6 1.1805 -5.2822 0.0458 25 6 0.9531 -4.4599 -1.2256 26 6 1.8381 -3.2119 -1.1852 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6584 2.1311 -0.0004 31 1 5.2827 2.3734 -0.5291 32 1 3.7394 3.2603 -0.5258 33 1 7.9302 3.1549 -0.2595 34 1 2.9163 4.3237 1.4147 35 1 5.0732 4.2763 3.6908 36 1 3.6585 5.4523 3.5618 37 1 2.0324 3.5065 3.6476 38 1 3.4464 2.3296 3.7765 39 1 5.3565 0.0055 0.0012 40 1 4.1353 -2.1309 0.0008 41 1 2.8093 -3.4649 1.2695 42 1 1.5361 -2.5375 2.0980 43 1 -0.1736 -4.1137 1.2492 44 1 1.0748 -4.9792 2.1776 45 1 0.5205 -6.1497 0.0415 46 1 2.2180 -5.6141 0.0843 47 1 -0.0938 -4.1619 -1.2839 48 1 1.2099 -5.0599 -2.0986 49 1 1.6681 -2.6170 -2.0825 50 1 2.8853 -3.5108 -1.1407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827636034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:14 Heat of formation + Delta-G solvation = 66.393580 kcal Electronic energy + Delta-G solvation = -27032.097567 eV Core-core repulsion = 23638.920124 eV Total energy + Delta-G solvation = -3393.177443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.00408 -37.96568 -36.79819 -34.15955 -33.07090 -32.11947 -30.88592 -30.83469 -28.86048 -26.36398 -25.63264 -24.23056 -23.07458 -22.77859 -21.64587 -21.33506 -20.07921 -19.60222 -19.39352 -16.86580 -16.37990 -15.56954 -15.14830 -14.99244 -14.71458 -14.41495 -14.39785 -13.96053 -13.82391 -13.62952 -13.33875 -13.08049 -12.86766 -12.75872 -12.50563 -12.29034 -12.00171 -11.77096 -11.34557 -11.29265 -11.24862 -11.01051 -10.95276 -10.86383 -10.71174 -10.58115 -10.54700 -10.48293 -10.30399 -10.07447 -9.96137 -9.61543 -9.28822 -8.50198 -8.28997 -8.14779 -7.74692 -6.51259 -5.88895 -3.43827 1.91053 2.03462 3.27728 3.37611 3.41012 3.96406 4.26653 4.42419 4.72468 4.80417 4.82058 4.97089 5.18316 5.28990 5.34891 5.36079 5.36215 5.43728 5.45959 5.54817 5.62279 5.73561 5.78025 5.80508 5.86990 5.91558 5.95552 5.99841 6.01620 6.03928 6.09195 6.11679 6.20325 6.22370 6.29154 6.32005 6.43572 6.51067 6.55561 6.64117 6.83943 7.00231 7.06714 7.09922 7.10961 7.19158 7.35025 7.44192 7.64598 7.77658 7.87286 8.46107 9.09656 9.71782 10.29420 11.12041 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.004073 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.168972 B = 6873.578258 C = 7750.835534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.069 4.069 3 C -0.114 4.114 4 C -0.065 4.065 5 C 0.176 3.824 6 N -0.541 5.541 7 C -0.254 4.254 8 H 0.061 0.939 9 C 0.018 3.982 10 N -0.886 5.886 11 Si 0.893 3.107 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.288 1.288 15 C 0.130 3.870 16 C -0.196 4.196 17 C -0.225 4.225 18 C -0.095 4.095 19 C -0.149 4.149 20 C 0.059 3.941 21 N -0.493 5.493 22 C 0.060 3.940 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.116 4.116 26 C 0.060 3.940 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.036 0.964 33 H 0.257 0.743 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.242 -11.332 -2.089 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.070 4.070 3 C -0.133 4.133 4 C -0.068 4.068 5 C 0.050 3.950 6 N -0.256 5.256 7 C -0.384 4.384 8 H 0.078 0.922 9 C -0.183 4.183 10 N -0.527 5.527 11 Si 0.723 3.277 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.214 1.214 15 C 0.021 3.979 16 C -0.235 4.235 17 C -0.266 4.266 18 C -0.114 4.114 19 C -0.170 4.170 20 C -0.035 4.035 21 N -0.214 5.214 22 C -0.067 4.067 23 C -0.153 4.153 24 C -0.159 4.159 25 C -0.153 4.153 26 C -0.066 4.066 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.573 -11.261 -2.286 17.033 hybrid contribution 1.812 -0.765 0.569 2.047 sum -10.762 -12.026 -1.718 16.229 Atomic orbital electron populations 1.20547 0.91602 1.01913 1.01339 1.19620 0.95587 0.91548 1.00205 1.20855 0.94008 0.96529 1.01913 1.21198 0.93498 0.98019 0.94101 1.20070 0.99684 0.88251 0.86949 1.43299 1.18254 1.52713 1.11330 1.18945 0.85014 1.39369 0.95080 0.92155 1.25185 0.97199 0.98403 0.97488 1.69894 1.23636 1.40337 1.18882 0.86366 0.82231 0.80412 0.78734 1.19993 1.21248 1.21429 1.21091 0.94874 0.95312 0.86635 1.23081 1.00026 0.94930 1.05450 1.23335 0.96866 0.98519 1.07874 1.20924 0.99890 0.91474 0.99122 1.21461 0.94358 0.97994 1.03141 1.18313 0.90010 0.89872 1.05318 1.59462 1.56934 1.02865 1.02141 1.22112 0.97630 0.94613 0.92348 1.21590 1.00616 0.95453 0.97678 1.21577 1.01269 0.97937 0.95106 1.21590 1.00762 0.95590 0.97399 1.22098 0.97236 0.94142 0.93164 0.92297 0.91127 0.92793 0.86838 0.87736 0.94553 0.93248 0.89529 0.88378 0.90852 0.91032 0.89881 0.86478 0.87700 0.94776 0.90710 0.91157 0.91729 0.92042 0.92400 0.91149 0.91768 0.90807 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 9.77 36.01 0.35 -0.96 16 2 C -0.07 -1.13 5.90 -104.42 -0.62 -1.75 16 3 C -0.11 -2.06 9.35 -39.61 -0.37 -2.43 16 4 C -0.07 -1.33 5.47 -104.58 -0.57 -1.90 16 5 C 0.18 4.01 5.45 -5.19 -0.03 3.98 16 6 N -0.54 -13.04 2.76 -167.02 -0.46 -13.50 16 7 C -0.25 -6.69 8.04 -15.06 -0.12 -6.81 16 8 H 0.06 1.64 7.23 -52.49 -0.38 1.26 16 9 C 0.02 0.47 4.97 -17.43 -0.09 0.39 16 10 N -0.89 -24.40 11.45 55.49 0.64 -23.76 16 11 Si 0.89 21.06 29.60 -169.99 -5.03 16.02 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.13 2.78 6.61 -67.93 -0.45 2.33 16 16 C -0.20 -3.95 9.81 -26.69 -0.26 -4.21 16 17 C -0.23 -4.41 10.09 -26.69 -0.27 -4.68 16 18 C -0.09 -1.91 9.69 -39.61 -0.38 -2.29 16 19 C -0.15 -2.64 8.70 -39.38 -0.34 -2.98 16 20 C 0.06 0.95 4.66 -83.79 -0.39 0.56 16 21 N -0.49 -6.72 3.57 -171.15 -0.61 -7.33 16 22 C 0.06 0.76 5.17 -3.83 -0.02 0.74 16 23 C -0.12 -1.15 6.09 -26.65 -0.16 -1.31 16 24 C -0.12 -1.11 6.00 -26.61 -0.16 -1.27 16 25 C -0.12 -1.11 6.09 -26.65 -0.16 -1.28 16 26 C 0.06 0.73 5.12 -3.83 -0.02 0.71 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.94 7.46 -51.93 -0.39 0.55 16 29 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.11 1.92 8.06 -52.49 -0.42 1.49 16 31 H 0.11 2.67 5.46 -51.93 -0.28 2.39 16 32 H 0.04 0.78 7.98 -51.93 -0.41 0.37 16 33 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 34 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 35 H 0.10 2.19 6.96 -51.93 -0.36 1.82 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.78 8.00 -51.93 -0.42 1.36 16 39 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 40 H 0.10 1.72 7.13 -52.49 -0.37 1.34 16 41 H 0.03 0.45 7.55 -51.93 -0.39 0.06 16 42 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 50 H 0.03 0.43 7.33 -51.93 -0.38 0.05 16 LS Contribution 390.90 15.07 5.89 5.89 Total: -1.00 -27.22 390.90 -12.50 -39.72 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -8.86 Total: 6.12 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -4.06 Total: -23.16 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.44 Total: -44.60 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -27.22 -12.50 -39.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827636034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.118 kcal (2) G-P(sol) polarization free energy of solvation -27.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds