Wall clock time and date at job start Tue Mar 31 2020 11:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38123 * 120.03240 * 2 1 4 4 C 1.38272 * 120.07106 * 180.25477 * 3 2 1 5 5 C 1.50705 * 119.92249 * 179.70541 * 4 3 2 6 6 N 1.46503 * 109.46795 * 89.99923 * 5 4 3 7 7 C 1.36933 * 119.99819 * 90.00134 * 6 5 4 8 8 H 1.07998 * 120.00220 * 218.10350 * 7 6 5 9 9 C 1.38818 * 120.00297 * 38.09824 * 7 6 5 10 10 N 1.31621 * 119.99770 * 20.49620 * 9 7 6 11 11 Si 1.86800 * 120.00125 * 200.49087 * 9 7 6 12 12 H 1.48497 * 109.47054 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46636 * 120.00246 * 11 9 7 14 14 H 1.48499 * 109.47299 * 240.00095 * 11 9 7 15 15 C 1.46496 * 119.99914 * 269.99139 * 6 5 4 16 16 C 1.53003 * 117.49814 * 194.01186 * 15 6 5 17 17 C 1.53010 * 117.49342 * 125.35754 * 15 6 5 18 18 C 1.38308 * 120.14901 * 359.44803 * 4 3 2 19 19 C 1.38089 * 120.07259 * 0.55447 * 18 4 3 20 20 C 1.38888 * 120.03804 * 179.97438 * 2 1 3 21 21 N 1.39668 * 120.07399 * 359.97438 * 20 2 1 22 22 C 1.46850 * 111.00059 * 244.21215 * 21 20 2 23 23 C 1.53037 * 109.52215 * 174.16460 * 22 21 20 24 24 C 1.53120 * 109.28150 * 59.18024 * 23 22 21 25 25 C 1.53112 * 109.15889 * 302.34473 * 24 23 22 26 26 C 1.46845 * 110.99940 * 120.00651 * 21 20 2 27 27 H 1.08998 * 109.47257 * 89.99718 * 1 2 3 28 28 H 1.09003 * 109.46843 * 209.99715 * 1 2 3 29 29 H 1.08994 * 109.47207 * 329.99758 * 1 2 3 30 30 H 1.07996 * 119.96843 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.46590 * 209.99456 * 5 4 3 32 32 H 1.08993 * 109.47093 * 329.99738 * 5 4 3 33 33 H 0.96999 * 120.00033 * 174.95839 * 10 9 7 34 34 H 1.09000 * 115.55540 * 339.69406 * 15 6 5 35 35 H 1.08997 * 117.49767 * 0.02562 * 16 15 6 36 36 H 1.09003 * 117.49533 * 145.02329 * 16 15 6 37 37 H 1.09000 * 117.49956 * 214.97865 * 17 15 6 38 38 H 1.08999 * 117.49725 * 359.97438 * 17 15 6 39 39 H 1.07992 * 119.96413 * 180.27918 * 18 4 3 40 40 H 1.07995 * 120.03223 * 179.70139 * 19 18 4 41 41 H 1.09000 * 109.46546 * 294.17784 * 22 21 20 42 42 H 1.08998 * 109.46006 * 54.14727 * 22 21 20 43 43 H 1.08997 * 109.50217 * 299.23504 * 23 22 21 44 44 H 1.09005 * 109.53015 * 179.14172 * 23 22 21 45 45 H 1.08998 * 109.52617 * 182.43822 * 24 23 22 46 46 H 1.09000 * 109.57299 * 62.28040 * 24 23 22 47 47 H 1.09004 * 109.50574 * 297.71504 * 25 24 23 48 48 H 1.09003 * 109.53902 * 177.61021 * 25 24 23 49 49 H 1.09003 * 109.46337 * 305.85423 * 26 21 20 50 50 H 1.08999 * 109.46756 * 65.82818 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1967 -0.0053 5 6 4.3319 2.5034 -0.0120 6 7 4.5805 2.9308 1.3671 7 6 5.7249 2.5397 2.0093 8 1 5.6949 2.2834 3.0580 9 6 6.9236 2.4724 1.3124 10 7 7.0703 3.1428 0.1893 11 14 8.3283 1.4305 1.9687 12 1 7.9122 0.7815 3.2379 13 1 8.6787 0.3875 0.9715 14 1 9.5105 2.2939 2.2181 15 6 3.6048 3.7767 2.0589 16 6 4.0526 4.4575 3.3539 17 6 3.0716 3.2836 3.4056 18 6 4.2766 0.0013 0.0009 19 6 3.5916 -1.1978 0.0008 20 6 2.2023 -1.2023 0.0005 21 7 1.5063 -2.4133 0.0016 22 6 1.7617 -3.1659 1.2364 23 6 0.8745 -4.4125 1.2683 24 6 1.1805 -5.2822 0.0458 25 6 0.9531 -4.4599 -1.2256 26 6 1.8381 -3.2119 -1.1852 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6584 2.1311 -0.0004 31 1 5.2827 2.3734 -0.5291 32 1 3.7394 3.2603 -0.5258 33 1 7.9302 3.1549 -0.2595 34 1 2.9163 4.3237 1.4147 35 1 5.0732 4.2763 3.6908 36 1 3.6585 5.4523 3.5618 37 1 2.0324 3.5065 3.6476 38 1 3.4464 2.3296 3.7765 39 1 5.3565 0.0055 0.0012 40 1 4.1353 -2.1309 0.0008 41 1 2.8093 -3.4649 1.2695 42 1 1.5361 -2.5375 2.0980 43 1 -0.1736 -4.1137 1.2492 44 1 1.0748 -4.9792 2.1776 45 1 0.5205 -6.1497 0.0415 46 1 2.2180 -5.6141 0.0843 47 1 -0.0938 -4.1619 -1.2839 48 1 1.2099 -5.0599 -2.0986 49 1 1.6681 -2.6170 -2.0825 50 1 2.8853 -3.5108 -1.1407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827636034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:13 Heat of formation + Delta-G solvation = 56.124485 kcal Electronic energy + Delta-G solvation = -27032.542869 eV Core-core repulsion = 23638.920124 eV Total energy + Delta-G solvation = -3393.622745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.23041 -39.31384 -38.34936 -35.64895 -34.53190 -33.46592 -32.57470 -31.77187 -30.40001 -27.67838 -27.24249 -25.75601 -24.18476 -23.96034 -22.97858 -22.92279 -21.74093 -21.05052 -20.43195 -18.33865 -17.99647 -17.32719 -16.55674 -16.29276 -16.03172 -15.92586 -15.63424 -15.45638 -15.03831 -14.83973 -14.50626 -14.43008 -14.02588 -13.97537 -13.88818 -13.63588 -13.21930 -13.18283 -13.11316 -12.79944 -12.72884 -12.53641 -12.36526 -12.19069 -12.14364 -12.03305 -11.95199 -11.74240 -11.59542 -11.40197 -11.35239 -11.22955 -10.92777 -10.47077 -9.57433 -9.43527 -9.18535 -8.44423 -7.87941 -5.47547 0.47630 0.58535 1.35585 1.40429 1.49026 2.41723 2.83639 2.87758 3.13312 3.46219 3.64787 3.86952 3.97670 3.99206 4.02991 4.10255 4.26588 4.30313 4.31388 4.43500 4.48886 4.50093 4.56910 4.57504 4.59325 4.67457 4.76467 4.87700 4.90353 4.90882 4.94877 4.96184 5.00878 5.02906 5.05537 5.13144 5.16127 5.23245 5.27015 5.34859 5.47113 5.47972 5.54308 5.54990 5.60969 5.69637 5.74302 6.00555 6.04100 6.06663 6.45171 6.55955 7.11848 7.81341 8.32958 9.08269 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.004073 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.168972 B = 6873.578258 C = 7750.835534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.068 4.068 3 C -0.113 4.113 4 C -0.082 4.082 5 C 0.182 3.818 6 N -0.557 5.557 7 C -0.253 4.253 8 H 0.045 0.955 9 C -0.022 4.022 10 N -0.913 5.913 11 Si 0.944 3.056 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.108 3.892 16 C -0.194 4.194 17 C -0.204 4.204 18 C -0.116 4.116 19 C -0.151 4.151 20 C 0.067 3.933 21 N -0.488 5.488 22 C 0.057 3.943 23 C -0.109 4.109 24 C -0.120 4.120 25 C -0.109 4.109 26 C 0.057 3.943 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.128 0.872 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.254 0.746 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.023 0.977 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.195 -12.745 -1.760 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.069 4.069 3 C -0.132 4.132 4 C -0.085 4.085 5 C 0.057 3.943 6 N -0.273 5.273 7 C -0.384 4.384 8 H 0.063 0.937 9 C -0.220 4.220 10 N -0.556 5.556 11 Si 0.772 3.228 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.212 1.212 15 C -0.001 4.001 16 C -0.232 4.232 17 C -0.244 4.244 18 C -0.136 4.136 19 C -0.171 4.171 20 C -0.027 4.027 21 N -0.210 5.210 22 C -0.069 4.069 23 C -0.147 4.147 24 C -0.157 4.157 25 C -0.147 4.147 26 C -0.069 4.069 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.146 0.854 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.125 0.875 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.087 0.913 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -15.548 -12.684 -1.946 20.160 hybrid contribution 2.643 -0.368 0.468 2.709 sum -12.904 -13.052 -1.478 18.414 Atomic orbital electron populations 1.20561 0.88880 1.02771 1.02509 1.19995 0.97485 0.90834 0.98587 1.20961 0.92871 0.97928 1.01459 1.20944 0.94580 0.96668 0.96270 1.19853 0.98466 0.89754 0.86236 1.43434 1.18385 1.53792 1.11657 1.18927 0.86090 1.38793 0.94544 0.93709 1.25681 0.98985 0.99423 0.97924 1.69998 1.23816 1.41853 1.19934 0.85583 0.80087 0.79092 0.78042 1.19932 1.21377 1.21226 1.21373 0.95185 0.96077 0.87435 1.23074 0.98975 0.96739 1.04450 1.23248 0.98305 0.97130 1.05756 1.20784 0.98685 0.92807 1.01330 1.21533 0.95329 0.97262 1.02948 1.18531 0.89431 0.91420 1.03271 1.59608 1.55923 1.02297 1.03162 1.22175 0.97804 0.95586 0.91375 1.21565 1.00041 0.94199 0.98858 1.21588 1.01607 0.98316 0.94233 1.21568 1.00246 0.94400 0.98453 1.22191 0.97516 0.95074 0.92164 0.90818 0.90620 0.91573 0.85410 0.91090 0.93899 0.93607 0.87505 0.91229 0.87797 0.87659 0.92236 0.89320 0.86948 0.95870 0.91837 0.90673 0.90410 0.89983 0.92751 0.90705 0.90168 0.91295 0.95677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.16 9.77 71.24 0.70 -1.46 16 2 C -0.07 -2.13 5.90 -19.73 -0.12 -2.24 16 3 C -0.11 -3.99 9.35 22.25 0.21 -3.78 16 4 C -0.08 -3.43 5.47 -19.84 -0.11 -3.54 16 5 C 0.18 8.60 5.45 85.63 0.47 9.07 16 6 N -0.56 -27.50 2.76 -682.32 -1.89 -29.39 16 7 C -0.25 -13.81 8.04 84.04 0.68 -13.13 16 8 H 0.05 2.54 7.23 -2.91 -0.02 2.52 16 9 C -0.02 -1.22 4.97 84.86 0.42 -0.80 16 10 N -0.91 -52.40 11.45 21.65 0.25 -52.15 16 11 Si 0.94 44.93 29.60 68.60 2.03 46.96 16 12 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 13 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 14 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 15 C 0.11 4.51 6.61 45.00 0.30 4.81 16 16 C -0.19 -7.63 9.81 30.62 0.30 -7.33 16 17 C -0.20 -7.68 10.09 30.62 0.31 -7.37 16 18 C -0.12 -4.92 9.69 22.25 0.22 -4.71 16 19 C -0.15 -5.41 8.70 22.40 0.19 -5.21 16 20 C 0.07 2.13 4.66 38.21 0.18 2.31 16 21 N -0.49 -12.45 3.57 -695.39 -2.48 -14.93 16 22 C 0.06 1.36 5.17 86.33 0.45 1.81 16 23 C -0.11 -1.86 6.09 30.65 0.19 -1.67 16 24 C -0.12 -1.81 6.00 30.67 0.18 -1.63 16 25 C -0.11 -1.77 6.09 30.65 0.19 -1.58 16 26 C 0.06 1.28 5.12 86.33 0.44 1.73 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.75 7.46 -2.39 -0.02 1.73 16 29 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 30 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.07 3.85 5.46 -2.39 -0.01 3.84 16 32 H 0.04 1.89 7.98 -2.39 -0.02 1.87 16 33 H 0.25 14.13 8.32 -92.71 -0.77 13.36 16 34 H 0.11 4.01 8.10 -2.39 -0.02 3.99 16 35 H 0.07 3.15 6.96 -2.39 -0.02 3.13 16 36 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 37 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.06 2.53 8.00 -2.39 -0.02 2.51 16 39 H 0.09 4.17 8.06 -2.91 -0.02 4.14 16 40 H 0.11 3.76 7.13 -2.91 -0.02 3.74 16 41 H 0.02 0.60 7.55 -2.39 -0.02 0.58 16 42 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 47 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.07 1.61 8.11 -2.39 -0.02 1.59 16 50 H 0.02 0.61 7.33 -2.39 -0.02 0.59 16 Total: -1.00 -60.74 390.90 3.98 -56.76 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.89 Total: 27.51 kcal Atomic # 6 Polarization: -39.93 SS G_CDS: 5.18 Total: -34.74 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -4.12 Total: -96.48 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -60.74 3.98 -56.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827636034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.880 kcal (2) G-P(sol) polarization free energy of solvation -60.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds