Wall clock time and date at job start Tue Mar 31 2020 11:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.52999 * 109.46884 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46884 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47471 * 60.00415 * 5 4 3 7 7 F 1.39899 * 109.47555 * 299.99749 * 5 4 3 8 8 C 1.50703 * 109.47110 * 180.02562 * 5 4 3 9 9 O 1.21279 * 120.00070 * 354.99817 * 8 5 4 10 10 N 1.34772 * 120.00199 * 175.00298 * 8 5 4 11 11 C 1.46503 * 120.00229 * 180.02562 * 10 8 5 12 12 C 1.52998 * 109.47303 * 179.97438 * 11 10 8 13 13 C 1.53040 * 109.45853 * 295.02227 * 12 11 10 14 14 C 1.53193 * 109.31052 * 178.59950 * 13 12 11 15 15 N 1.46924 * 108.76748 * 54.66136 * 14 13 12 16 16 C 1.36936 * 120.63764 * 126.40069 * 15 14 13 17 17 H 1.08008 * 119.99310 * 331.82548 * 16 15 14 18 18 C 1.38810 * 120.00435 * 151.82370 * 16 15 14 19 19 N 1.31623 * 119.99922 * 343.08296 * 18 16 15 20 20 Si 1.86800 * 120.00130 * 163.08235 * 18 16 15 21 21 H 1.48502 * 109.47033 * 59.99810 * 20 18 16 22 22 H 1.48504 * 109.46944 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47004 * 299.99861 * 20 18 16 24 24 C 1.46929 * 118.73678 * 306.38491 * 15 14 13 25 25 C 1.53047 * 109.46030 * 174.96873 * 12 11 10 26 26 H 1.08998 * 109.46739 * 300.00112 * 1 2 3 27 27 H 1.09001 * 109.47122 * 60.00004 * 1 2 3 28 28 H 1.08994 * 109.46873 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46740 * 240.00676 * 2 1 3 30 30 H 1.08992 * 109.47211 * 120.00113 * 2 1 3 31 31 H 1.09004 * 109.47310 * 59.99975 * 3 2 1 32 32 H 1.09001 * 109.47255 * 299.99915 * 3 2 1 33 33 H 1.09003 * 109.47104 * 60.00715 * 4 3 2 34 34 H 1.08992 * 109.47258 * 300.00163 * 4 3 2 35 35 H 1.09008 * 109.46535 * 299.99607 * 6 5 4 36 36 H 1.08992 * 109.47086 * 59.99583 * 6 5 4 37 37 H 1.08997 * 109.47336 * 180.02562 * 6 5 4 38 38 H 0.97001 * 120.00474 * 359.97438 * 10 8 5 39 39 H 1.09002 * 109.47050 * 299.99767 * 11 10 8 40 40 H 1.08996 * 109.47210 * 59.99254 * 11 10 8 41 41 H 1.08998 * 109.46200 * 54.99841 * 12 11 10 42 42 H 1.08997 * 109.50176 * 298.56509 * 13 12 11 43 43 H 1.08998 * 109.49499 * 58.66913 * 13 12 11 44 44 H 1.08997 * 109.60283 * 294.86760 * 14 13 12 45 45 H 1.09005 * 109.69958 * 174.50678 * 14 13 12 46 46 H 0.96992 * 120.00080 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.58137 * 293.82053 * 24 15 14 48 48 H 1.08998 * 109.70495 * 173.46700 * 24 15 14 49 49 H 1.08990 * 109.49554 * 301.33819 * 25 12 11 50 50 H 1.09002 * 109.49043 * 61.43387 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0013 6 6 3.5695 3.6059 1.2506 7 9 3.6142 3.5449 -1.1410 8 6 5.5870 2.8851 0.0013 9 8 6.1934 1.8388 0.0924 10 7 6.2608 4.0479 -0.0999 11 6 7.7258 4.0479 -0.1004 12 6 8.2358 5.4849 -0.2259 13 6 7.8298 6.0528 -1.5878 14 6 8.3116 7.5030 -1.6960 15 7 9.7566 7.5419 -1.4329 16 6 10.6131 8.1271 -2.3267 17 1 10.3620 8.1542 -3.3769 18 6 11.8041 8.6855 -1.8833 19 7 11.9684 8.9565 -0.6057 20 14 13.1736 9.0525 -3.0995 21 1 12.6846 10.0140 -4.1202 22 1 14.3311 9.6408 -2.3788 23 1 13.5939 7.7939 -3.7662 24 6 10.2651 6.9412 -0.1922 25 6 9.7611 5.4975 -0.1006 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9287 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 2.4794 3.6059 1.2501 36 1 3.9324 3.0919 2.1405 37 1 3.9324 4.6337 1.2508 38 1 5.7759 4.8848 -0.1730 39 1 8.0895 3.6130 0.8305 40 1 8.0889 3.4590 -0.9427 41 1 7.8014 6.0949 0.5661 42 1 8.2843 5.4582 -2.3802 43 1 6.7447 6.0220 -1.6859 44 1 7.7899 8.1174 -0.9622 45 1 8.1124 7.8826 -2.6982 46 1 12.8004 9.3470 -0.2959 47 1 9.9027 7.5097 0.6643 48 1 11.3550 6.9479 -0.2005 49 1 10.0506 5.0712 0.8598 50 1 10.1971 4.9080 -0.9072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828681052.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:24 Heat of formation + Delta-G solvation = -100.509368 kcal Electronic energy + Delta-G solvation = -26918.251907 eV Core-core repulsion = 23087.067784 eV Total energy + Delta-G solvation = -3831.184123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.13938 -39.90269 -37.92214 -36.45147 -35.04403 -33.37349 -32.77481 -30.82786 -29.78394 -29.08495 -27.04069 -25.69497 -24.14732 -22.80925 -22.14720 -21.25138 -20.99054 -20.07608 -19.13119 -17.87580 -16.74698 -16.49483 -16.35242 -15.68423 -15.27462 -14.97004 -14.86233 -14.55316 -14.02393 -13.93601 -13.63518 -13.53444 -13.49955 -13.21707 -13.06494 -12.82351 -12.59837 -12.54011 -12.39242 -12.33950 -11.90406 -11.67924 -11.52316 -11.38617 -11.34567 -11.00873 -10.96884 -10.82535 -10.71844 -10.52506 -10.27450 -10.24279 -10.00410 -9.83619 -9.56751 -9.44359 -9.10333 -8.46853 -6.67274 -5.79285 -3.21676 2.31788 2.90220 3.38436 3.44129 3.45704 4.03039 4.13362 4.26741 4.43485 4.49664 4.65525 4.73100 4.81394 5.02337 5.07380 5.16227 5.18785 5.28302 5.35395 5.37870 5.40254 5.41701 5.47619 5.57759 5.61671 5.66162 5.70339 5.83087 5.83362 5.88329 5.95415 6.01366 6.02150 6.10462 6.30539 6.33387 6.44511 6.58326 6.66305 6.74270 6.80113 6.96959 7.31113 7.37347 7.64658 7.79156 7.96913 8.45186 9.21354 9.84778 10.41519 11.29300 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.038667 B = 0.002222 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.949593 B =12595.721672 C =12754.844477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.124 4.124 5 C 0.106 3.894 6 C -0.175 4.175 7 F -0.193 7.193 8 C 0.496 3.504 9 O -0.528 6.528 10 N -0.712 5.712 11 C 0.121 3.879 12 C -0.090 4.090 13 C -0.128 4.128 14 C 0.146 3.854 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.172 3.828 25 C -0.133 4.133 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.403 0.597 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.016 0.984 45 H 0.053 0.947 46 H 0.254 0.746 47 H 0.017 0.983 48 H 0.088 0.912 49 H 0.051 0.949 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.373 -13.949 4.682 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.161 4.161 4 C -0.162 4.162 5 C 0.084 3.916 6 C -0.233 4.233 7 F -0.174 7.174 8 C 0.280 3.720 9 O -0.404 6.404 10 N -0.363 5.363 11 C -0.002 4.002 12 C -0.109 4.109 13 C -0.167 4.167 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.046 3.954 25 C -0.173 4.173 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.239 0.761 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.034 0.966 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.106 0.894 49 H 0.069 0.931 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.762 -14.578 4.790 25.020 hybrid contribution 0.535 0.728 -0.698 1.142 sum -19.226 -13.850 4.092 24.046 Atomic orbital electron populations 1.21774 0.95780 1.01605 1.01849 1.21506 0.95874 0.96497 1.02282 1.21700 0.94071 0.97490 1.02819 1.21965 0.96211 0.92884 1.05161 1.21215 0.90922 0.94833 0.84592 1.22451 1.03440 1.01370 0.96018 1.92913 1.89658 1.82514 1.52292 1.20771 0.89517 0.84414 0.77342 1.90723 1.69542 1.31256 1.48916 1.46109 1.08421 1.08869 1.72905 1.21670 0.77797 0.98688 1.02035 1.21318 0.97952 0.93029 0.98579 1.22084 0.98540 0.99828 0.96285 1.20886 0.86373 0.92248 0.98589 1.44038 1.00235 1.65306 1.21904 1.19143 0.99641 1.30640 0.88801 0.91801 1.25043 1.00165 0.98382 0.96067 1.70015 1.25641 1.45603 1.13547 0.86370 0.81808 0.78090 0.80505 1.20895 1.21634 1.21033 1.20758 1.00274 0.86869 0.87503 1.22184 0.92863 1.01974 1.00238 0.92755 0.92691 0.92776 0.91866 0.91886 0.91390 0.91242 0.90086 0.89309 0.89768 0.89984 0.90746 0.76142 0.91519 0.91394 0.91263 0.92128 0.93424 0.96606 0.92838 0.93589 0.96452 0.89387 0.93052 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.12 -0.88 4.74 -26.73 -0.13 -1.01 16 4 C -0.12 -1.13 3.84 -26.73 -0.10 -1.23 16 5 C 0.11 1.06 1.18 -91.77 -0.11 0.95 16 6 C -0.18 -1.28 8.53 37.16 0.32 -0.97 16 7 F -0.19 -2.17 16.27 2.25 0.04 -2.13 16 8 C 0.50 6.42 6.82 -10.99 -0.07 6.34 16 9 O -0.53 -8.50 15.98 5.56 0.09 -8.41 16 10 N -0.71 -8.77 5.23 -60.29 -0.32 -9.09 16 11 C 0.12 1.69 5.06 -4.04 -0.02 1.67 16 12 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 13 C -0.13 -2.12 5.25 -26.61 -0.14 -2.26 16 14 C 0.15 2.97 6.52 -3.71 -0.02 2.94 16 15 N -0.59 -14.61 2.99 -172.32 -0.52 -15.12 16 16 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 17 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -26.06 11.19 55.49 0.62 -25.44 16 20 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 25 C -0.13 -2.43 5.36 -26.61 -0.14 -2.57 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.42 6.43 -51.93 -0.33 0.08 16 32 H 0.07 0.54 7.80 -51.93 -0.41 0.13 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 35 H 0.08 0.50 6.43 -51.92 -0.33 0.16 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.52 7.93 -51.93 -0.41 0.10 16 38 H 0.40 4.31 7.43 -40.82 -0.30 4.00 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.67 7.15 -51.93 -0.37 0.30 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 2.31 6.07 -51.93 -0.31 2.00 16 49 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 391.26 15.07 5.90 5.90 Total: -1.00 -30.69 391.26 -9.07 -39.77 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -9.19 Total: 0.18 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.66 Total: -2.29 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.21 Total: -49.65 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.69 -9.07 -39.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828681052.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.743 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds