Wall clock time and date at job start Tue Mar 31 2020 11:47:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.52999 * 109.46850 * 2 1
4 4 C 1.52999 * 109.46884 * 179.97438 * 3 2 1
5 5 C 1.52999 * 109.46884 * 180.02562 * 4 3 2
6 6 C 1.53003 * 109.47471 * 60.00415 * 5 4 3
7 7 F 1.39899 * 109.47555 * 299.99749 * 5 4 3
8 8 C 1.50703 * 109.47110 * 180.02562 * 5 4 3
9 9 O 1.21279 * 120.00070 * 354.99817 * 8 5 4
10 10 N 1.34772 * 120.00199 * 175.00298 * 8 5 4
11 11 C 1.46503 * 120.00229 * 180.02562 * 10 8 5
12 12 C 1.52998 * 109.47303 * 179.97438 * 11 10 8
13 13 C 1.53040 * 109.45853 * 295.02227 * 12 11 10
14 14 C 1.53193 * 109.31052 * 178.59950 * 13 12 11
15 15 N 1.46924 * 108.76748 * 54.66136 * 14 13 12
16 16 C 1.36936 * 120.63764 * 126.40069 * 15 14 13
17 17 H 1.08008 * 119.99310 * 331.82548 * 16 15 14
18 18 C 1.38810 * 120.00435 * 151.82370 * 16 15 14
19 19 N 1.31623 * 119.99922 * 343.08296 * 18 16 15
20 20 Si 1.86800 * 120.00130 * 163.08235 * 18 16 15
21 21 H 1.48502 * 109.47033 * 59.99810 * 20 18 16
22 22 H 1.48504 * 109.46944 * 180.02562 * 20 18 16
23 23 H 1.48502 * 109.47004 * 299.99861 * 20 18 16
24 24 C 1.46929 * 118.73678 * 306.38491 * 15 14 13
25 25 C 1.53047 * 109.46030 * 174.96873 * 12 11 10
26 26 H 1.08998 * 109.46739 * 300.00112 * 1 2 3
27 27 H 1.09001 * 109.47122 * 60.00004 * 1 2 3
28 28 H 1.08994 * 109.46873 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.46740 * 240.00676 * 2 1 3
30 30 H 1.08992 * 109.47211 * 120.00113 * 2 1 3
31 31 H 1.09004 * 109.47310 * 59.99975 * 3 2 1
32 32 H 1.09001 * 109.47255 * 299.99915 * 3 2 1
33 33 H 1.09003 * 109.47104 * 60.00715 * 4 3 2
34 34 H 1.08992 * 109.47258 * 300.00163 * 4 3 2
35 35 H 1.09008 * 109.46535 * 299.99607 * 6 5 4
36 36 H 1.08992 * 109.47086 * 59.99583 * 6 5 4
37 37 H 1.08997 * 109.47336 * 180.02562 * 6 5 4
38 38 H 0.97001 * 120.00474 * 359.97438 * 10 8 5
39 39 H 1.09002 * 109.47050 * 299.99767 * 11 10 8
40 40 H 1.08996 * 109.47210 * 59.99254 * 11 10 8
41 41 H 1.08998 * 109.46200 * 54.99841 * 12 11 10
42 42 H 1.08997 * 109.50176 * 298.56509 * 13 12 11
43 43 H 1.08998 * 109.49499 * 58.66913 * 13 12 11
44 44 H 1.08997 * 109.60283 * 294.86760 * 14 13 12
45 45 H 1.09005 * 109.69958 * 174.50678 * 14 13 12
46 46 H 0.96992 * 120.00080 * 180.02562 * 19 18 16
47 47 H 1.09002 * 109.58137 * 293.82053 * 24 15 14
48 48 H 1.08998 * 109.70495 * 173.46700 * 24 15 14
49 49 H 1.08990 * 109.49554 * 301.33819 * 25 12 11
50 50 H 1.09002 * 109.49043 * 61.43387 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 0.0006
5 6 4.0799 2.8850 0.0013
6 6 3.5695 3.6059 1.2506
7 9 3.6142 3.5449 -1.1410
8 6 5.5870 2.8851 0.0013
9 8 6.1934 1.8388 0.0924
10 7 6.2608 4.0479 -0.0999
11 6 7.7258 4.0479 -0.1004
12 6 8.2358 5.4849 -0.2259
13 6 7.8298 6.0528 -1.5878
14 6 8.3116 7.5030 -1.6960
15 7 9.7566 7.5419 -1.4329
16 6 10.6131 8.1271 -2.3267
17 1 10.3620 8.1542 -3.3769
18 6 11.8041 8.6855 -1.8833
19 7 11.9684 8.9565 -0.6057
20 14 13.1736 9.0525 -3.0995
21 1 12.6846 10.0140 -4.1202
22 1 14.3311 9.6408 -2.3788
23 1 13.5939 7.7939 -3.7662
24 6 10.2651 6.9412 -0.1922
25 6 9.7611 5.4975 -0.1006
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0276 -0.0005
29 1 1.8933 -0.5137 -0.8900
30 1 1.8934 -0.5138 0.8899
31 1 1.6767 1.9564 0.8900
32 1 1.6767 1.9563 -0.8900
33 1 3.9337 0.9287 -0.8892
34 1 3.9330 0.9288 0.8908
35 1 2.4794 3.6059 1.2501
36 1 3.9324 3.0919 2.1405
37 1 3.9324 4.6337 1.2508
38 1 5.7759 4.8848 -0.1730
39 1 8.0895 3.6130 0.8305
40 1 8.0889 3.4590 -0.9427
41 1 7.8014 6.0949 0.5661
42 1 8.2843 5.4582 -2.3802
43 1 6.7447 6.0220 -1.6859
44 1 7.7899 8.1174 -0.9622
45 1 8.1124 7.8826 -2.6982
46 1 12.8004 9.3470 -0.2959
47 1 9.9027 7.5097 0.6643
48 1 11.3550 6.9479 -0.2005
49 1 10.0506 5.0712 0.8598
50 1 10.1971 4.9080 -0.9072
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000828681052.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:47:24
Heat of formation + Delta-G solvation = -100.509368 kcal
Electronic energy + Delta-G solvation = -26918.251907 eV
Core-core repulsion = 23087.067784 eV
Total energy + Delta-G solvation = -3831.184123 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 314.211 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-48.13938 -39.90269 -37.92214 -36.45147 -35.04403 -33.37349 -32.77481 -30.82786
-29.78394 -29.08495 -27.04069 -25.69497 -24.14732 -22.80925 -22.14720 -21.25138
-20.99054 -20.07608 -19.13119 -17.87580 -16.74698 -16.49483 -16.35242 -15.68423
-15.27462 -14.97004 -14.86233 -14.55316 -14.02393 -13.93601 -13.63518 -13.53444
-13.49955 -13.21707 -13.06494 -12.82351 -12.59837 -12.54011 -12.39242 -12.33950
-11.90406 -11.67924 -11.52316 -11.38617 -11.34567 -11.00873 -10.96884 -10.82535
-10.71844 -10.52506 -10.27450 -10.24279 -10.00410 -9.83619 -9.56751 -9.44359
-9.10333 -8.46853 -6.67274 -5.79285 -3.21676 2.31788 2.90220 3.38436
3.44129 3.45704 4.03039 4.13362 4.26741 4.43485 4.49664 4.65525
4.73100 4.81394 5.02337 5.07380 5.16227 5.18785 5.28302 5.35395
5.37870 5.40254 5.41701 5.47619 5.57759 5.61671 5.66162 5.70339
5.83087 5.83362 5.88329 5.95415 6.01366 6.02150 6.10462 6.30539
6.33387 6.44511 6.58326 6.66305 6.74270 6.80113 6.96959 7.31113
7.37347 7.64658 7.79156 7.96913 8.45186 9.21354 9.84778 10.41519
11.29300
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.038667 B = 0.002222 C = 0.002195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 723.949593 B =12595.721672 C =12754.844477
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.124 4.124
3 C -0.123 4.123
4 C -0.124 4.124
5 C 0.106 3.894
6 C -0.175 4.175
7 F -0.193 7.193
8 C 0.496 3.504
9 O -0.528 6.528
10 N -0.712 5.712
11 C 0.121 3.879
12 C -0.090 4.090
13 C -0.128 4.128
14 C 0.146 3.854
15 N -0.592 5.592
16 C -0.253 4.253
17 H 0.064 0.936
18 C 0.002 3.998
19 N -0.904 5.904
20 Si 0.902 3.098
21 H -0.283 1.283
22 H -0.290 1.290
23 H -0.284 1.284
24 C 0.172 3.828
25 C -0.133 4.133
26 H 0.053 0.947
27 H 0.054 0.946
28 H 0.053 0.947
29 H 0.063 0.937
30 H 0.062 0.938
31 H 0.067 0.933
32 H 0.069 0.931
33 H 0.080 0.920
34 H 0.088 0.912
35 H 0.084 0.916
36 H 0.081 0.919
37 H 0.074 0.926
38 H 0.403 0.597
39 H 0.067 0.933
40 H 0.068 0.932
41 H 0.069 0.931
42 H 0.060 0.940
43 H 0.047 0.953
44 H 0.016 0.984
45 H 0.053 0.947
46 H 0.254 0.746
47 H 0.017 0.983
48 H 0.088 0.912
49 H 0.051 0.949
50 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.373 -13.949 4.682 25.131
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.162 4.162
3 C -0.161 4.161
4 C -0.162 4.162
5 C 0.084 3.916
6 C -0.233 4.233
7 F -0.174 7.174
8 C 0.280 3.720
9 O -0.404 6.404
10 N -0.363 5.363
11 C -0.002 4.002
12 C -0.109 4.109
13 C -0.167 4.167
14 C 0.019 3.981
15 N -0.315 5.315
16 C -0.382 4.382
17 H 0.082 0.918
18 C -0.197 4.197
19 N -0.548 5.548
20 Si 0.732 3.268
21 H -0.209 1.209
22 H -0.216 1.216
23 H -0.210 1.210
24 C 0.046 3.954
25 C -0.173 4.173
26 H 0.072 0.928
27 H 0.073 0.927
28 H 0.072 0.928
29 H 0.081 0.919
30 H 0.081 0.919
31 H 0.086 0.914
32 H 0.088 0.912
33 H 0.099 0.901
34 H 0.107 0.893
35 H 0.102 0.898
36 H 0.100 0.900
37 H 0.093 0.907
38 H 0.239 0.761
39 H 0.085 0.915
40 H 0.086 0.914
41 H 0.087 0.913
42 H 0.079 0.921
43 H 0.066 0.934
44 H 0.034 0.966
45 H 0.072 0.928
46 H 0.064 0.936
47 H 0.035 0.965
48 H 0.106 0.894
49 H 0.069 0.931
50 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -19.762 -14.578 4.790 25.020
hybrid contribution 0.535 0.728 -0.698 1.142
sum -19.226 -13.850 4.092 24.046
Atomic orbital electron populations
1.21774 0.95780 1.01605 1.01849 1.21506 0.95874 0.96497 1.02282
1.21700 0.94071 0.97490 1.02819 1.21965 0.96211 0.92884 1.05161
1.21215 0.90922 0.94833 0.84592 1.22451 1.03440 1.01370 0.96018
1.92913 1.89658 1.82514 1.52292 1.20771 0.89517 0.84414 0.77342
1.90723 1.69542 1.31256 1.48916 1.46109 1.08421 1.08869 1.72905
1.21670 0.77797 0.98688 1.02035 1.21318 0.97952 0.93029 0.98579
1.22084 0.98540 0.99828 0.96285 1.20886 0.86373 0.92248 0.98589
1.44038 1.00235 1.65306 1.21904 1.19143 0.99641 1.30640 0.88801
0.91801 1.25043 1.00165 0.98382 0.96067 1.70015 1.25641 1.45603
1.13547 0.86370 0.81808 0.78090 0.80505 1.20895 1.21634 1.21033
1.20758 1.00274 0.86869 0.87503 1.22184 0.92863 1.01974 1.00238
0.92755 0.92691 0.92776 0.91866 0.91886 0.91390 0.91242 0.90086
0.89309 0.89768 0.89984 0.90746 0.76142 0.91519 0.91394 0.91263
0.92128 0.93424 0.96606 0.92838 0.93589 0.96452 0.89387 0.93052
0.92364
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16
2 C -0.12 -0.81 5.93 -26.73 -0.16 -0.97 16
3 C -0.12 -0.88 4.74 -26.73 -0.13 -1.01 16
4 C -0.12 -1.13 3.84 -26.73 -0.10 -1.23 16
5 C 0.11 1.06 1.18 -91.77 -0.11 0.95 16
6 C -0.18 -1.28 8.53 37.16 0.32 -0.97 16
7 F -0.19 -2.17 16.27 2.25 0.04 -2.13 16
8 C 0.50 6.42 6.82 -10.99 -0.07 6.34 16
9 O -0.53 -8.50 15.98 5.56 0.09 -8.41 16
10 N -0.71 -8.77 5.23 -60.29 -0.32 -9.09 16
11 C 0.12 1.69 5.06 -4.04 -0.02 1.67 16
12 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16
13 C -0.13 -2.12 5.25 -26.61 -0.14 -2.26 16
14 C 0.15 2.97 6.52 -3.71 -0.02 2.94 16
15 N -0.59 -14.61 2.99 -172.32 -0.52 -15.12 16
16 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16
17 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16
18 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16
19 N -0.90 -26.06 11.19 55.49 0.62 -25.44 16
20 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16
21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
24 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16
25 C -0.13 -2.43 5.36 -26.61 -0.14 -2.57 16
26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16
27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16
28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16
29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.07 0.42 6.43 -51.93 -0.33 0.08 16
32 H 0.07 0.54 7.80 -51.93 -0.41 0.13 16
33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16
34 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16
35 H 0.08 0.50 6.43 -51.92 -0.33 0.16 16
36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.07 0.52 7.93 -51.93 -0.41 0.10 16
38 H 0.40 4.31 7.43 -40.82 -0.30 4.00 16
39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16
40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
43 H 0.05 0.67 7.15 -51.93 -0.37 0.30 16
44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16
45 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16
46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16
47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
48 H 0.09 2.31 6.07 -51.93 -0.31 2.00 16
49 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
50 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
LS Contribution 391.26 15.07 5.90 5.90
Total: -1.00 -30.69 391.26 -9.07 -39.77
By element:
Atomic # 1 Polarization: 9.38 SS G_CDS: -9.19 Total: 0.18 kcal
Atomic # 6 Polarization: -1.63 SS G_CDS: -0.66 Total: -2.29 kcal
Atomic # 7 Polarization: -49.44 SS G_CDS: -0.21 Total: -49.65 kcal
Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal
Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -30.69 -9.07 -39.77 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000828681052.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.743 kcal
(2) G-P(sol) polarization free energy of solvation -30.694 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.437 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.509 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds