Wall clock time and date at job start Tue Mar 31 2020 11:47:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.52999 * 109.46850 * 2 1
4 4 C 1.52999 * 109.46884 * 179.97438 * 3 2 1
5 5 C 1.52999 * 109.46884 * 180.02562 * 4 3 2
6 6 C 1.53003 * 109.47471 * 60.00415 * 5 4 3
7 7 F 1.39899 * 109.47555 * 299.99749 * 5 4 3
8 8 C 1.50703 * 109.47110 * 180.02562 * 5 4 3
9 9 O 1.21279 * 120.00070 * 354.99817 * 8 5 4
10 10 N 1.34772 * 120.00199 * 175.00298 * 8 5 4
11 11 C 1.46503 * 120.00229 * 180.02562 * 10 8 5
12 12 C 1.52998 * 109.47303 * 179.97438 * 11 10 8
13 13 C 1.53040 * 109.45853 * 295.02227 * 12 11 10
14 14 C 1.53193 * 109.31052 * 178.59950 * 13 12 11
15 15 N 1.46924 * 108.76748 * 54.66136 * 14 13 12
16 16 C 1.36936 * 120.63764 * 126.40069 * 15 14 13
17 17 H 1.08008 * 119.99310 * 331.82548 * 16 15 14
18 18 C 1.38810 * 120.00435 * 151.82370 * 16 15 14
19 19 N 1.31623 * 119.99922 * 343.08296 * 18 16 15
20 20 Si 1.86800 * 120.00130 * 163.08235 * 18 16 15
21 21 H 1.48502 * 109.47033 * 59.99810 * 20 18 16
22 22 H 1.48504 * 109.46944 * 180.02562 * 20 18 16
23 23 H 1.48502 * 109.47004 * 299.99861 * 20 18 16
24 24 C 1.46929 * 118.73678 * 306.38491 * 15 14 13
25 25 C 1.53047 * 109.46030 * 174.96873 * 12 11 10
26 26 H 1.08998 * 109.46739 * 300.00112 * 1 2 3
27 27 H 1.09001 * 109.47122 * 60.00004 * 1 2 3
28 28 H 1.08994 * 109.46873 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.46740 * 240.00676 * 2 1 3
30 30 H 1.08992 * 109.47211 * 120.00113 * 2 1 3
31 31 H 1.09004 * 109.47310 * 59.99975 * 3 2 1
32 32 H 1.09001 * 109.47255 * 299.99915 * 3 2 1
33 33 H 1.09003 * 109.47104 * 60.00715 * 4 3 2
34 34 H 1.08992 * 109.47258 * 300.00163 * 4 3 2
35 35 H 1.09008 * 109.46535 * 299.99607 * 6 5 4
36 36 H 1.08992 * 109.47086 * 59.99583 * 6 5 4
37 37 H 1.08997 * 109.47336 * 180.02562 * 6 5 4
38 38 H 0.97001 * 120.00474 * 359.97438 * 10 8 5
39 39 H 1.09002 * 109.47050 * 299.99767 * 11 10 8
40 40 H 1.08996 * 109.47210 * 59.99254 * 11 10 8
41 41 H 1.08998 * 109.46200 * 54.99841 * 12 11 10
42 42 H 1.08997 * 109.50176 * 298.56509 * 13 12 11
43 43 H 1.08998 * 109.49499 * 58.66913 * 13 12 11
44 44 H 1.08997 * 109.60283 * 294.86760 * 14 13 12
45 45 H 1.09005 * 109.69958 * 174.50678 * 14 13 12
46 46 H 0.96992 * 120.00080 * 180.02562 * 19 18 16
47 47 H 1.09002 * 109.58137 * 293.82053 * 24 15 14
48 48 H 1.08998 * 109.70495 * 173.46700 * 24 15 14
49 49 H 1.08990 * 109.49554 * 301.33819 * 25 12 11
50 50 H 1.09002 * 109.49043 * 61.43387 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 0.0006
5 6 4.0799 2.8850 0.0013
6 6 3.5695 3.6059 1.2506
7 9 3.6142 3.5449 -1.1410
8 6 5.5870 2.8851 0.0013
9 8 6.1934 1.8388 0.0924
10 7 6.2608 4.0479 -0.0999
11 6 7.7258 4.0479 -0.1004
12 6 8.2358 5.4849 -0.2259
13 6 7.8298 6.0528 -1.5878
14 6 8.3116 7.5030 -1.6960
15 7 9.7566 7.5419 -1.4329
16 6 10.6131 8.1271 -2.3267
17 1 10.3620 8.1542 -3.3769
18 6 11.8041 8.6855 -1.8833
19 7 11.9684 8.9565 -0.6057
20 14 13.1736 9.0525 -3.0995
21 1 12.6846 10.0140 -4.1202
22 1 14.3311 9.6408 -2.3788
23 1 13.5939 7.7939 -3.7662
24 6 10.2651 6.9412 -0.1922
25 6 9.7611 5.4975 -0.1006
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0276 -0.0005
29 1 1.8933 -0.5137 -0.8900
30 1 1.8934 -0.5138 0.8899
31 1 1.6767 1.9564 0.8900
32 1 1.6767 1.9563 -0.8900
33 1 3.9337 0.9287 -0.8892
34 1 3.9330 0.9288 0.8908
35 1 2.4794 3.6059 1.2501
36 1 3.9324 3.0919 2.1405
37 1 3.9324 4.6337 1.2508
38 1 5.7759 4.8848 -0.1730
39 1 8.0895 3.6130 0.8305
40 1 8.0889 3.4590 -0.9427
41 1 7.8014 6.0949 0.5661
42 1 8.2843 5.4582 -2.3802
43 1 6.7447 6.0220 -1.6859
44 1 7.7899 8.1174 -0.9622
45 1 8.1124 7.8826 -2.6982
46 1 12.8004 9.3470 -0.2959
47 1 9.9027 7.5097 0.6643
48 1 11.3550 6.9479 -0.2005
49 1 10.0506 5.0712 0.8598
50 1 10.1971 4.9080 -0.9072
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000828681052.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:47:23
Heat of formation + Delta-G solvation = -117.446585 kcal
Electronic energy + Delta-G solvation = -26918.986360 eV
Core-core repulsion = 23087.067784 eV
Total energy + Delta-G solvation = -3831.918576 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 314.211 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-48.97038 -40.97229 -39.41511 -37.14496 -36.42941 -34.60679 -33.84523 -32.52042
-31.42751 -29.78416 -28.45565 -26.57850 -25.67001 -23.99781 -23.47972 -22.52521
-21.83157 -21.08105 -20.60721 -18.94159 -18.53753 -17.45278 -17.17341 -16.84806
-16.37623 -16.16283 -15.87976 -15.84782 -15.43695 -15.30857 -14.94006 -14.68994
-14.56618 -14.22837 -14.04240 -13.86748 -13.79172 -13.58085 -13.42032 -13.16549
-13.12360 -13.01115 -12.82443 -12.56120 -12.30024 -12.25983 -12.11118 -12.03291
-11.97181 -11.85623 -11.65566 -11.58889 -11.38439 -11.26973 -11.13404 -10.79356
-10.52659 -10.19919 -8.66883 -7.87600 -5.32442 1.31581 1.45912 1.48448
1.54956 1.92847 2.51049 3.24589 3.26755 3.44303 3.46744 3.70003
3.73017 3.80569 3.91302 4.05695 4.12154 4.14718 4.30468 4.48511
4.49773 4.52163 4.62586 4.65534 4.70461 4.73849 4.77270 4.82557
4.85843 4.92202 4.93973 5.00205 5.05425 5.10479 5.13395 5.16582
5.25413 5.27189 5.30296 5.33439 5.41198 5.41499 5.50077 5.54281
5.65456 5.78440 6.34047 6.39890 6.98333 7.15797 7.87909 8.38530
9.18384
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.038667 B = 0.002222 C = 0.002195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 723.949593 B =12595.721672 C =12754.844477
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.125 4.125
3 C -0.117 4.117
4 C -0.122 4.122
5 C 0.109 3.891
6 C -0.173 4.173
7 F -0.199 7.199
8 C 0.493 3.507
9 O -0.563 6.563
10 N -0.705 5.705
11 C 0.134 3.866
12 C -0.078 4.078
13 C -0.115 4.115
14 C 0.140 3.860
15 N -0.612 5.612
16 C -0.264 4.264
17 H 0.063 0.937
18 C -0.050 4.050
19 N -0.934 5.934
20 Si 0.965 3.035
21 H -0.275 1.275
22 H -0.293 1.293
23 H -0.280 1.280
24 C 0.177 3.823
25 C -0.122 4.122
26 H 0.060 0.940
27 H 0.053 0.947
28 H 0.057 0.943
29 H 0.055 0.945
30 H 0.066 0.934
31 H 0.084 0.916
32 H 0.064 0.936
33 H 0.062 0.938
34 H 0.089 0.911
35 H 0.102 0.898
36 H 0.088 0.912
37 H 0.081 0.919
38 H 0.414 0.586
39 H 0.070 0.930
40 H 0.056 0.944
41 H 0.080 0.920
42 H 0.049 0.951
43 H 0.080 0.920
44 H 0.019 0.981
45 H 0.050 0.950
46 H 0.250 0.750
47 H 0.000 1.000
48 H 0.051 0.949
49 H 0.071 0.929
50 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.389 -14.563 4.930 27.159
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.163 4.163
3 C -0.154 4.154
4 C -0.161 4.161
5 C 0.088 3.912
6 C -0.230 4.230
7 F -0.180 7.180
8 C 0.278 3.722
9 O -0.442 6.442
10 N -0.357 5.357
11 C 0.010 3.990
12 C -0.096 4.096
13 C -0.154 4.154
14 C 0.015 3.985
15 N -0.336 5.336
16 C -0.394 4.394
17 H 0.081 0.919
18 C -0.246 4.246
19 N -0.580 5.580
20 Si 0.793 3.207
21 H -0.201 1.201
22 H -0.219 1.219
23 H -0.207 1.207
24 C 0.051 3.949
25 C -0.162 4.162
26 H 0.079 0.921
27 H 0.072 0.928
28 H 0.076 0.924
29 H 0.074 0.926
30 H 0.084 0.916
31 H 0.102 0.898
32 H 0.082 0.918
33 H 0.081 0.919
34 H 0.107 0.893
35 H 0.121 0.879
36 H 0.107 0.893
37 H 0.100 0.900
38 H 0.251 0.749
39 H 0.089 0.911
40 H 0.074 0.926
41 H 0.098 0.902
42 H 0.067 0.933
43 H 0.099 0.901
44 H 0.037 0.963
45 H 0.069 0.931
46 H 0.059 0.941
47 H 0.018 0.982
48 H 0.070 0.930
49 H 0.090 0.910
50 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -21.822 -15.185 5.025 27.056
hybrid contribution 1.132 0.928 -0.788 1.662
sum -20.690 -14.257 4.237 25.481
Atomic orbital electron populations
1.21766 0.95007 1.02000 1.02131 1.21513 0.96536 0.96102 1.02119
1.21670 0.92444 0.97994 1.03320 1.21959 0.97577 0.92213 1.04302
1.21281 0.88705 0.95709 0.85526 1.22497 1.04611 1.01377 0.94555
1.92904 1.89498 1.82673 1.52935 1.21332 0.90828 0.83773 0.76270
1.90710 1.70576 1.32459 1.50465 1.46010 1.07682 1.09436 1.72524
1.21368 0.78900 0.96952 1.01783 1.21150 0.95843 0.94302 0.98355
1.21932 1.00335 0.96731 0.96449 1.21058 0.84123 0.94878 0.98439
1.44319 1.01914 1.65531 1.21788 1.19457 1.00437 1.30109 0.89386
0.91910 1.25771 1.02258 0.98923 0.97634 1.70162 1.25819 1.46823
1.15155 0.85383 0.78904 0.77916 0.78501 1.20120 1.21935 1.20657
1.20574 0.98196 0.89569 0.86539 1.21981 0.94913 0.98200 1.01064
0.92064 0.92802 0.92389 0.92611 0.91565 0.89767 0.91754 0.91940
0.89263 0.87933 0.89266 0.90048 0.74910 0.91139 0.92571 0.90181
0.93260 0.90121 0.96270 0.93150 0.94104 0.98174 0.93028 0.91001
0.93255
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.46 9.91 71.99 0.71 -0.74 16
2 C -0.13 -1.44 5.93 30.60 0.18 -1.26 16
3 C -0.12 -1.44 4.74 30.59 0.15 -1.29 16
4 C -0.12 -2.06 3.84 30.59 0.12 -1.94 16
5 C 0.11 1.95 1.18 -11.54 -0.01 1.94 16
6 C -0.17 -2.00 8.53 71.98 0.61 -1.38 16
7 F -0.20 -4.04 16.27 44.97 0.73 -3.30 16
8 C 0.49 11.90 6.82 87.66 0.60 12.50 16
9 O -0.56 -17.63 15.98 -3.02 -0.05 -17.67 16
10 N -0.71 -15.67 5.23 -463.07 -2.42 -18.10 16
11 C 0.13 3.47 5.06 86.38 0.44 3.91 16
12 C -0.08 -2.26 2.19 -10.77 -0.02 -2.28 16
13 C -0.12 -3.59 5.25 30.67 0.16 -3.43 16
14 C 0.14 5.60 6.52 86.36 0.56 6.16 16
15 N -0.61 -30.44 2.99 -699.09 -2.09 -32.54 16
16 C -0.26 -14.57 9.58 84.03 0.81 -13.77 16
17 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16
18 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16
19 N -0.93 -55.20 11.19 21.65 0.24 -54.96 16
20 Si 0.96 45.15 29.59 68.60 2.03 47.18 16
21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16
22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16
23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16
24 C 0.18 8.37 5.30 86.36 0.46 8.83 16
25 C -0.12 -4.38 5.36 30.67 0.16 -4.21 16
26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16
28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16
30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16
31 H 0.08 0.77 6.43 -2.39 -0.02 0.76 16
32 H 0.06 0.87 7.80 -2.39 -0.02 0.86 16
33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
34 H 0.09 1.49 8.05 -2.39 -0.02 1.47 16
35 H 0.10 0.83 6.43 -2.38 -0.02 0.82 16
36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
37 H 0.08 0.85 7.93 -2.39 -0.02 0.83 16
38 H 0.41 7.51 7.43 -92.71 -0.69 6.82 16
39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16
40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16
41 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16
42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
43 H 0.08 2.00 7.15 -2.39 -0.02 1.98 16
44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16
45 H 0.05 2.00 7.93 -2.38 -0.02 1.99 16
46 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16
47 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16
48 H 0.05 2.80 6.07 -2.39 -0.01 2.79 16
49 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16
50 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16
Total: -1.00 -67.28 391.26 3.99 -63.29
By element:
Atomic # 1 Polarization: 15.28 SS G_CDS: 0.21 Total: 15.49 kcal
Atomic # 6 Polarization: -4.73 SS G_CDS: 5.34 Total: 0.60 kcal
Atomic # 7 Polarization: -101.32 SS G_CDS: -4.27 Total: -105.59 kcal
Atomic # 8 Polarization: -17.63 SS G_CDS: -0.05 Total: -17.67 kcal
Atomic # 9 Polarization: -4.04 SS G_CDS: 0.73 Total: -3.30 kcal
Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal
Total: -67.28 3.99 -63.29 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000828681052.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.153 kcal
(2) G-P(sol) polarization free energy of solvation -67.280 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.433 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.294 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.447 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds