Wall clock time and date at job start Tue Mar 31 2020 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.52999 * 109.46884 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46884 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47471 * 60.00415 * 5 4 3 7 7 F 1.39899 * 109.47555 * 299.99749 * 5 4 3 8 8 C 1.50703 * 109.47110 * 180.02562 * 5 4 3 9 9 O 1.21279 * 120.00070 * 354.99817 * 8 5 4 10 10 N 1.34772 * 120.00199 * 175.00298 * 8 5 4 11 11 C 1.46503 * 120.00229 * 180.02562 * 10 8 5 12 12 C 1.52998 * 109.47303 * 179.97438 * 11 10 8 13 13 C 1.53040 * 109.45853 * 295.02227 * 12 11 10 14 14 C 1.53193 * 109.31052 * 178.59950 * 13 12 11 15 15 N 1.46924 * 108.76748 * 54.66136 * 14 13 12 16 16 C 1.36936 * 120.63764 * 126.40069 * 15 14 13 17 17 H 1.08008 * 119.99310 * 331.82548 * 16 15 14 18 18 C 1.38810 * 120.00435 * 151.82370 * 16 15 14 19 19 N 1.31623 * 119.99922 * 343.08296 * 18 16 15 20 20 Si 1.86800 * 120.00130 * 163.08235 * 18 16 15 21 21 H 1.48502 * 109.47033 * 59.99810 * 20 18 16 22 22 H 1.48504 * 109.46944 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47004 * 299.99861 * 20 18 16 24 24 C 1.46929 * 118.73678 * 306.38491 * 15 14 13 25 25 C 1.53047 * 109.46030 * 174.96873 * 12 11 10 26 26 H 1.08998 * 109.46739 * 300.00112 * 1 2 3 27 27 H 1.09001 * 109.47122 * 60.00004 * 1 2 3 28 28 H 1.08994 * 109.46873 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46740 * 240.00676 * 2 1 3 30 30 H 1.08992 * 109.47211 * 120.00113 * 2 1 3 31 31 H 1.09004 * 109.47310 * 59.99975 * 3 2 1 32 32 H 1.09001 * 109.47255 * 299.99915 * 3 2 1 33 33 H 1.09003 * 109.47104 * 60.00715 * 4 3 2 34 34 H 1.08992 * 109.47258 * 300.00163 * 4 3 2 35 35 H 1.09008 * 109.46535 * 299.99607 * 6 5 4 36 36 H 1.08992 * 109.47086 * 59.99583 * 6 5 4 37 37 H 1.08997 * 109.47336 * 180.02562 * 6 5 4 38 38 H 0.97001 * 120.00474 * 359.97438 * 10 8 5 39 39 H 1.09002 * 109.47050 * 299.99767 * 11 10 8 40 40 H 1.08996 * 109.47210 * 59.99254 * 11 10 8 41 41 H 1.08998 * 109.46200 * 54.99841 * 12 11 10 42 42 H 1.08997 * 109.50176 * 298.56509 * 13 12 11 43 43 H 1.08998 * 109.49499 * 58.66913 * 13 12 11 44 44 H 1.08997 * 109.60283 * 294.86760 * 14 13 12 45 45 H 1.09005 * 109.69958 * 174.50678 * 14 13 12 46 46 H 0.96992 * 120.00080 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.58137 * 293.82053 * 24 15 14 48 48 H 1.08998 * 109.70495 * 173.46700 * 24 15 14 49 49 H 1.08990 * 109.49554 * 301.33819 * 25 12 11 50 50 H 1.09002 * 109.49043 * 61.43387 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0013 6 6 3.5695 3.6059 1.2506 7 9 3.6142 3.5449 -1.1410 8 6 5.5870 2.8851 0.0013 9 8 6.1934 1.8388 0.0924 10 7 6.2608 4.0479 -0.0999 11 6 7.7258 4.0479 -0.1004 12 6 8.2358 5.4849 -0.2259 13 6 7.8298 6.0528 -1.5878 14 6 8.3116 7.5030 -1.6960 15 7 9.7566 7.5419 -1.4329 16 6 10.6131 8.1271 -2.3267 17 1 10.3620 8.1542 -3.3769 18 6 11.8041 8.6855 -1.8833 19 7 11.9684 8.9565 -0.6057 20 14 13.1736 9.0525 -3.0995 21 1 12.6846 10.0140 -4.1202 22 1 14.3311 9.6408 -2.3788 23 1 13.5939 7.7939 -3.7662 24 6 10.2651 6.9412 -0.1922 25 6 9.7611 5.4975 -0.1006 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9287 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 2.4794 3.6059 1.2501 36 1 3.9324 3.0919 2.1405 37 1 3.9324 4.6337 1.2508 38 1 5.7759 4.8848 -0.1730 39 1 8.0895 3.6130 0.8305 40 1 8.0889 3.4590 -0.9427 41 1 7.8014 6.0949 0.5661 42 1 8.2843 5.4582 -2.3802 43 1 6.7447 6.0220 -1.6859 44 1 7.7899 8.1174 -0.9622 45 1 8.1124 7.8826 -2.6982 46 1 12.8004 9.3470 -0.2959 47 1 9.9027 7.5097 0.6643 48 1 11.3550 6.9479 -0.2005 49 1 10.0506 5.0712 0.8598 50 1 10.1971 4.9080 -0.9072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828681052.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:23 Heat of formation + Delta-G solvation = -117.446585 kcal Electronic energy + Delta-G solvation = -26918.986360 eV Core-core repulsion = 23087.067784 eV Total energy + Delta-G solvation = -3831.918576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.97038 -40.97229 -39.41511 -37.14496 -36.42941 -34.60679 -33.84523 -32.52042 -31.42751 -29.78416 -28.45565 -26.57850 -25.67001 -23.99781 -23.47972 -22.52521 -21.83157 -21.08105 -20.60721 -18.94159 -18.53753 -17.45278 -17.17341 -16.84806 -16.37623 -16.16283 -15.87976 -15.84782 -15.43695 -15.30857 -14.94006 -14.68994 -14.56618 -14.22837 -14.04240 -13.86748 -13.79172 -13.58085 -13.42032 -13.16549 -13.12360 -13.01115 -12.82443 -12.56120 -12.30024 -12.25983 -12.11118 -12.03291 -11.97181 -11.85623 -11.65566 -11.58889 -11.38439 -11.26973 -11.13404 -10.79356 -10.52659 -10.19919 -8.66883 -7.87600 -5.32442 1.31581 1.45912 1.48448 1.54956 1.92847 2.51049 3.24589 3.26755 3.44303 3.46744 3.70003 3.73017 3.80569 3.91302 4.05695 4.12154 4.14718 4.30468 4.48511 4.49773 4.52163 4.62586 4.65534 4.70461 4.73849 4.77270 4.82557 4.85843 4.92202 4.93973 5.00205 5.05425 5.10479 5.13395 5.16582 5.25413 5.27189 5.30296 5.33439 5.41198 5.41499 5.50077 5.54281 5.65456 5.78440 6.34047 6.39890 6.98333 7.15797 7.87909 8.38530 9.18384 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.038667 B = 0.002222 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.949593 B =12595.721672 C =12754.844477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.122 4.122 5 C 0.109 3.891 6 C -0.173 4.173 7 F -0.199 7.199 8 C 0.493 3.507 9 O -0.563 6.563 10 N -0.705 5.705 11 C 0.134 3.866 12 C -0.078 4.078 13 C -0.115 4.115 14 C 0.140 3.860 15 N -0.612 5.612 16 C -0.264 4.264 17 H 0.063 0.937 18 C -0.050 4.050 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.275 1.275 22 H -0.293 1.293 23 H -0.280 1.280 24 C 0.177 3.823 25 C -0.122 4.122 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.414 0.586 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.019 0.981 45 H 0.050 0.950 46 H 0.250 0.750 47 H 0.000 1.000 48 H 0.051 0.949 49 H 0.071 0.929 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.389 -14.563 4.930 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.161 4.161 5 C 0.088 3.912 6 C -0.230 4.230 7 F -0.180 7.180 8 C 0.278 3.722 9 O -0.442 6.442 10 N -0.357 5.357 11 C 0.010 3.990 12 C -0.096 4.096 13 C -0.154 4.154 14 C 0.015 3.985 15 N -0.336 5.336 16 C -0.394 4.394 17 H 0.081 0.919 18 C -0.246 4.246 19 N -0.580 5.580 20 Si 0.793 3.207 21 H -0.201 1.201 22 H -0.219 1.219 23 H -0.207 1.207 24 C 0.051 3.949 25 C -0.162 4.162 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.251 0.749 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.018 0.982 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.822 -15.185 5.025 27.056 hybrid contribution 1.132 0.928 -0.788 1.662 sum -20.690 -14.257 4.237 25.481 Atomic orbital electron populations 1.21766 0.95007 1.02000 1.02131 1.21513 0.96536 0.96102 1.02119 1.21670 0.92444 0.97994 1.03320 1.21959 0.97577 0.92213 1.04302 1.21281 0.88705 0.95709 0.85526 1.22497 1.04611 1.01377 0.94555 1.92904 1.89498 1.82673 1.52935 1.21332 0.90828 0.83773 0.76270 1.90710 1.70576 1.32459 1.50465 1.46010 1.07682 1.09436 1.72524 1.21368 0.78900 0.96952 1.01783 1.21150 0.95843 0.94302 0.98355 1.21932 1.00335 0.96731 0.96449 1.21058 0.84123 0.94878 0.98439 1.44319 1.01914 1.65531 1.21788 1.19457 1.00437 1.30109 0.89386 0.91910 1.25771 1.02258 0.98923 0.97634 1.70162 1.25819 1.46823 1.15155 0.85383 0.78904 0.77916 0.78501 1.20120 1.21935 1.20657 1.20574 0.98196 0.89569 0.86539 1.21981 0.94913 0.98200 1.01064 0.92064 0.92802 0.92389 0.92611 0.91565 0.89767 0.91754 0.91940 0.89263 0.87933 0.89266 0.90048 0.74910 0.91139 0.92571 0.90181 0.93260 0.90121 0.96270 0.93150 0.94104 0.98174 0.93028 0.91001 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.99 0.71 -0.74 16 2 C -0.13 -1.44 5.93 30.60 0.18 -1.26 16 3 C -0.12 -1.44 4.74 30.59 0.15 -1.29 16 4 C -0.12 -2.06 3.84 30.59 0.12 -1.94 16 5 C 0.11 1.95 1.18 -11.54 -0.01 1.94 16 6 C -0.17 -2.00 8.53 71.98 0.61 -1.38 16 7 F -0.20 -4.04 16.27 44.97 0.73 -3.30 16 8 C 0.49 11.90 6.82 87.66 0.60 12.50 16 9 O -0.56 -17.63 15.98 -3.02 -0.05 -17.67 16 10 N -0.71 -15.67 5.23 -463.07 -2.42 -18.10 16 11 C 0.13 3.47 5.06 86.38 0.44 3.91 16 12 C -0.08 -2.26 2.19 -10.77 -0.02 -2.28 16 13 C -0.12 -3.59 5.25 30.67 0.16 -3.43 16 14 C 0.14 5.60 6.52 86.36 0.56 6.16 16 15 N -0.61 -30.44 2.99 -699.09 -2.09 -32.54 16 16 C -0.26 -14.57 9.58 84.03 0.81 -13.77 16 17 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 18 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 19 N -0.93 -55.20 11.19 21.65 0.24 -54.96 16 20 Si 0.96 45.15 29.59 68.60 2.03 47.18 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 C 0.18 8.37 5.30 86.36 0.46 8.83 16 25 C -0.12 -4.38 5.36 30.67 0.16 -4.21 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.77 6.43 -2.39 -0.02 0.76 16 32 H 0.06 0.87 7.80 -2.39 -0.02 0.86 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.49 8.05 -2.39 -0.02 1.47 16 35 H 0.10 0.83 6.43 -2.38 -0.02 0.82 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.85 7.93 -2.39 -0.02 0.83 16 38 H 0.41 7.51 7.43 -92.71 -0.69 6.82 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 2.00 7.15 -2.39 -0.02 1.98 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.05 2.00 7.93 -2.38 -0.02 1.99 16 46 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 47 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 48 H 0.05 2.80 6.07 -2.39 -0.01 2.79 16 49 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 50 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -67.28 391.26 3.99 -63.29 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.21 Total: 15.49 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 5.34 Total: 0.60 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -4.27 Total: -105.59 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.73 Total: -3.30 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -67.28 3.99 -63.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828681052.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.153 kcal (2) G-P(sol) polarization free energy of solvation -67.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds