Wall clock time and date at job start Tue Mar 31 2020 11:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99718 * 2 1 4 4 C 1.50698 * 109.47114 * 269.99712 * 3 2 1 5 5 H 1.07996 * 120.00146 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99965 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99935 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00126 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.47214 * 89.99891 * 8 6 4 10 10 H 1.48500 * 109.47240 * 210.00306 * 8 6 4 11 11 H 1.48497 * 109.46858 * 330.00174 * 8 6 4 12 12 C 1.39669 * 119.99733 * 179.97438 * 2 1 3 13 13 C 1.38918 * 120.07914 * 0.02562 * 12 2 1 14 14 C 1.38097 * 119.92594 * 179.97438 * 13 12 2 15 15 C 1.38281 * 120.07843 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.92970 * 180.02562 * 15 14 13 17 17 N 1.46901 * 109.46943 * 90.00087 * 16 15 14 18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.63985 * 300.00142 * 18 17 16 20 20 C 1.53021 * 109.64114 * 60.42395 * 18 17 16 21 21 C 1.50065 * 110.14953 * 169.12223 * 20 18 17 22 22 C 1.29452 * 124.07078 * 342.86546 * 21 20 18 23 23 C 1.50059 * 124.07637 * 0.44815 * 22 21 20 24 24 C 1.52948 * 110.30329 * 343.05404 * 23 22 21 25 25 C 1.38288 * 120.15008 * 0.27918 * 15 14 13 26 26 C 1.38108 * 120.07240 * 359.44894 * 25 15 14 27 27 H 1.09003 * 109.47234 * 270.00109 * 1 2 3 28 28 H 1.08999 * 109.47134 * 30.00162 * 1 2 3 29 29 H 1.09002 * 109.47250 * 149.99837 * 1 2 3 30 30 H 1.08997 * 109.47437 * 29.99894 * 3 2 1 31 31 H 1.09002 * 109.46433 * 150.00326 * 3 2 1 32 32 H 0.97000 * 120.00306 * 179.97438 * 7 6 4 33 33 H 1.08001 * 120.03082 * 0.02562 * 13 12 2 34 34 H 1.07999 * 119.96065 * 180.02562 * 14 13 12 35 35 H 1.09004 * 109.46763 * 330.00528 * 16 15 14 36 36 H 1.08995 * 109.47483 * 210.00185 * 16 15 14 37 37 H 1.00901 * 111.00067 * 303.95401 * 17 16 15 38 38 H 1.09000 * 109.46940 * 60.00168 * 19 18 17 39 39 H 1.08998 * 109.47160 * 179.97438 * 19 18 17 40 40 H 1.08994 * 109.46994 * 300.00126 * 19 18 17 41 41 H 1.09001 * 109.35444 * 289.32458 * 20 18 17 42 42 H 1.08992 * 109.36346 * 49.05001 * 20 18 17 43 43 H 1.08002 * 117.96903 * 162.84260 * 21 20 18 44 44 H 1.07998 * 117.95617 * 180.46964 * 22 21 20 45 45 H 1.08997 * 109.35921 * 103.10129 * 23 22 21 46 46 H 1.09004 * 109.36045 * 222.68426 * 23 22 21 47 47 H 1.09000 * 109.43774 * 289.48278 * 24 23 22 48 48 H 1.09003 * 109.80009 * 168.88248 * 24 23 22 49 49 H 1.07995 * 119.96695 * 179.70102 * 25 15 14 50 50 H 1.08003 * 120.03947 * 180.27310 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.3465 3.2568 -2.9126 8 14 3.7337 3.9288 -0.2529 9 1 5.1068 3.5070 0.1238 10 1 3.7496 5.3554 -0.6648 11 1 2.8271 3.7596 0.9110 12 6 2.1633 -1.2096 0.0005 13 6 1.4704 -2.4136 0.0005 14 6 2.1640 -3.6077 0.0005 15 6 3.5468 -3.6060 0.0000 16 6 4.3003 -4.9110 -0.0006 17 7 4.5446 -5.3348 -1.3858 18 6 5.2784 -6.6068 -1.4256 19 6 6.6260 -6.4454 -0.7193 20 6 4.4592 -7.6951 -0.7283 21 6 5.0637 -9.0437 -0.9887 22 6 5.9123 -9.2876 -1.9354 23 6 6.4174 -8.2537 -2.8986 24 6 5.5072 -7.0247 -2.8836 25 6 4.2399 -2.4093 0.0053 26 6 3.5525 -1.2115 -0.0004 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1383 0.5138 32 1 3.8233 4.0827 -3.0899 33 1 0.3903 -2.4156 -0.0003 34 1 1.6258 -4.5441 0.0001 35 1 3.7114 -5.6708 0.5133 36 1 5.2529 -4.7809 0.5129 37 1 3.6800 -5.4001 -1.9018 38 1 6.4600 -6.1558 0.3183 39 1 7.1678 -7.3907 -0.7500 40 1 7.2100 -5.6750 -1.2226 41 1 4.4467 -7.5060 0.3451 42 1 3.4384 -7.6793 -1.1099 43 1 4.7731 -9.8617 -0.3461 44 1 6.2793 -10.2981 -2.0384 45 1 7.4259 -7.9553 -2.6123 46 1 6.4393 -8.6760 -3.9033 47 1 4.5528 -7.2745 -3.3472 48 1 5.9803 -6.2081 -3.4289 49 1 5.3198 -2.4114 0.0097 50 1 4.0944 -0.2772 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839192428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:54 Heat of formation + Delta-G solvation = 46.680416 kcal Electronic energy + Delta-G solvation = -25835.952392 eV Core-core repulsion = 22441.920122 eV Total energy + Delta-G solvation = -3394.032270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.97950 -38.94371 -36.27581 -34.73292 -32.63075 -31.41831 -30.73028 -30.53145 -28.77706 -28.26977 -27.36252 -25.70221 -24.18030 -23.13729 -21.93484 -21.40860 -20.37000 -19.53942 -17.45607 -16.99840 -16.91963 -16.54267 -15.54998 -15.21169 -14.79199 -14.47698 -14.41894 -14.24897 -13.84781 -13.66161 -13.51683 -13.27784 -13.17467 -12.95340 -12.74107 -12.44796 -12.39173 -12.22144 -11.96495 -11.68553 -11.64833 -11.56218 -11.44221 -11.10008 -10.94233 -10.69072 -10.59695 -10.55865 -10.48921 -10.22911 -10.04958 -9.57459 -9.23168 -8.89432 -8.64855 -8.32083 -8.26484 -6.40565 -6.13393 -4.13395 2.05155 2.08004 2.18441 3.22475 3.30124 3.30862 4.03857 4.11430 4.33156 4.49271 4.53761 4.65629 4.75921 4.97319 5.08712 5.16799 5.18077 5.23387 5.28070 5.33321 5.44981 5.48831 5.53530 5.59002 5.64402 5.66676 5.76131 5.77829 5.86817 5.91179 5.96456 5.97584 6.02847 6.09666 6.22454 6.24523 6.33608 6.38606 6.40409 6.55476 6.70401 6.75618 6.76016 6.98159 7.07030 7.13664 7.29521 7.48030 7.53292 7.55566 8.05305 8.34818 8.52342 8.94403 9.46395 10.99704 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020011 B = 0.002624 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.921325 B =10667.649594 C =11355.630765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.612 5.612 3 C 0.221 3.779 4 C -0.534 4.534 5 H 0.076 0.924 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.241 3.759 13 C -0.218 4.218 14 C -0.068 4.068 15 C -0.168 4.168 16 C 0.111 3.889 17 N -0.672 5.672 18 C 0.114 3.886 19 C -0.140 4.140 20 C -0.119 4.119 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.090 4.090 24 C -0.108 4.108 25 C -0.050 4.050 26 C -0.188 4.188 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.341 0.659 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.077 0.923 49 H 0.112 0.888 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.583 -22.386 5.520 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.317 5.317 3 C 0.099 3.901 4 C -0.573 4.573 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.134 3.866 13 C -0.241 4.241 14 C -0.088 4.088 15 C -0.171 4.171 16 C -0.017 4.017 17 N -0.302 5.302 18 C 0.023 3.977 19 C -0.198 4.198 20 C -0.158 4.158 21 C -0.168 4.168 22 C -0.175 4.175 23 C -0.128 4.128 24 C -0.146 4.146 25 C -0.070 4.070 26 C -0.210 4.210 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.160 0.840 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.096 0.904 49 H 0.130 0.870 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.110 -21.608 5.343 22.475 hybrid contribution -0.475 0.007 0.783 0.916 sum 2.635 -21.601 6.126 22.607 Atomic orbital electron populations 1.21488 0.81061 1.02313 0.99650 1.46709 1.04384 1.03952 1.76703 1.19655 0.91907 0.80693 0.97812 1.21474 1.36909 1.07256 0.91616 0.90562 1.24900 0.95416 0.97259 0.95460 1.69900 1.41227 1.23493 1.18648 0.86915 0.79952 0.80189 0.83061 1.19871 1.20968 1.19053 1.17918 0.91473 0.85839 0.91333 1.20512 0.98987 0.91314 1.13291 1.20510 0.93351 0.96483 0.98432 1.19224 0.93084 0.94022 1.10795 1.20725 0.98674 0.93092 0.89173 1.60731 1.26797 1.28774 1.13912 1.20965 0.94257 0.87311 0.95186 1.21920 0.95902 1.01814 1.00131 1.21264 0.99469 0.93587 1.01504 1.21971 0.98720 0.97599 0.98476 1.22050 0.99100 0.99236 0.97145 1.20472 0.99603 0.94312 0.98389 1.21606 0.99984 0.97395 0.95575 1.20639 0.98780 0.91298 0.96254 1.20840 0.92587 0.98736 1.08881 0.94584 0.91281 0.92422 0.95478 0.95494 0.92509 0.86875 0.87697 0.95220 0.90743 0.84034 0.92693 0.92110 0.91765 0.90929 0.91107 0.88363 0.88217 0.90554 0.91140 0.92056 0.90439 0.86978 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.19 59.85 0.61 2.31 16 2 N -0.61 -12.81 2.99 -181.00 -0.54 -13.35 16 3 C 0.22 5.20 3.98 -5.20 -0.02 5.18 16 4 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 5 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.89 -27.10 13.96 55.43 0.77 -26.32 16 8 Si 0.87 20.77 27.47 -169.99 -4.67 16.11 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 12 C 0.24 4.80 6.55 -83.78 -0.55 4.25 16 13 C -0.22 -3.72 9.21 -39.38 -0.36 -4.08 16 14 C -0.07 -1.03 9.69 -39.62 -0.38 -1.42 16 15 C -0.17 -2.55 5.39 -104.59 -0.56 -3.11 16 16 C 0.11 1.35 5.05 -4.98 -0.03 1.33 16 17 N -0.67 -7.88 6.09 -101.00 -0.62 -8.50 16 18 C 0.11 1.12 0.72 -131.39 -0.09 1.02 16 19 C -0.14 -1.36 7.59 37.16 0.28 -1.07 16 20 C -0.12 -1.08 4.28 -28.18 -0.12 -1.20 16 21 C -0.15 -1.25 9.41 -35.90 -0.34 -1.58 16 22 C -0.16 -1.25 9.16 -35.91 -0.33 -1.58 16 23 C -0.09 -0.71 5.47 -28.22 -0.15 -0.86 16 24 C -0.11 -1.00 5.20 -26.56 -0.14 -1.13 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 26 C -0.19 -3.75 9.21 -39.38 -0.36 -4.11 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 29 H 0.06 0.89 6.20 -51.93 -0.32 0.57 16 30 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 31 H 0.03 0.64 5.62 -51.93 -0.29 0.34 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.11 1.74 6.14 -52.49 -0.32 1.42 16 34 H 0.10 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.03 0.33 6.52 -51.93 -0.34 -0.01 16 36 H 0.07 0.90 6.26 -51.93 -0.33 0.57 16 37 H 0.34 4.02 8.71 -39.29 -0.34 3.68 16 38 H 0.05 0.54 6.42 -51.93 -0.33 0.20 16 39 H 0.06 0.53 5.72 -51.93 -0.30 0.24 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.66 7.00 -51.93 -0.36 0.30 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.10 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.08 0.58 6.94 -51.93 -0.36 0.22 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 48 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 50 H 0.13 2.74 6.14 -52.48 -0.32 2.42 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -29.92 381.78 -10.90 -40.82 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -8.23 Total: 6.09 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -3.37 Total: -20.59 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.38 Total: -48.17 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.92 -10.90 -40.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839192428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.496 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds