Wall clock time and date at job start Tue Mar 31 2020 11:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99718 * 2 1 4 4 C 1.50698 * 109.47114 * 269.99712 * 3 2 1 5 5 H 1.07996 * 120.00146 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99965 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99935 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00126 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.47214 * 89.99891 * 8 6 4 10 10 H 1.48500 * 109.47240 * 210.00306 * 8 6 4 11 11 H 1.48497 * 109.46858 * 330.00174 * 8 6 4 12 12 C 1.39669 * 119.99733 * 179.97438 * 2 1 3 13 13 C 1.38918 * 120.07914 * 0.02562 * 12 2 1 14 14 C 1.38097 * 119.92594 * 179.97438 * 13 12 2 15 15 C 1.38281 * 120.07843 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.92970 * 180.02562 * 15 14 13 17 17 N 1.46901 * 109.46943 * 90.00087 * 16 15 14 18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.63985 * 300.00142 * 18 17 16 20 20 C 1.53021 * 109.64114 * 60.42395 * 18 17 16 21 21 C 1.50065 * 110.14953 * 169.12223 * 20 18 17 22 22 C 1.29452 * 124.07078 * 342.86546 * 21 20 18 23 23 C 1.50059 * 124.07637 * 0.44815 * 22 21 20 24 24 C 1.52948 * 110.30329 * 343.05404 * 23 22 21 25 25 C 1.38288 * 120.15008 * 0.27918 * 15 14 13 26 26 C 1.38108 * 120.07240 * 359.44894 * 25 15 14 27 27 H 1.09003 * 109.47234 * 270.00109 * 1 2 3 28 28 H 1.08999 * 109.47134 * 30.00162 * 1 2 3 29 29 H 1.09002 * 109.47250 * 149.99837 * 1 2 3 30 30 H 1.08997 * 109.47437 * 29.99894 * 3 2 1 31 31 H 1.09002 * 109.46433 * 150.00326 * 3 2 1 32 32 H 0.97000 * 120.00306 * 179.97438 * 7 6 4 33 33 H 1.08001 * 120.03082 * 0.02562 * 13 12 2 34 34 H 1.07999 * 119.96065 * 180.02562 * 14 13 12 35 35 H 1.09004 * 109.46763 * 330.00528 * 16 15 14 36 36 H 1.08995 * 109.47483 * 210.00185 * 16 15 14 37 37 H 1.00901 * 111.00067 * 303.95401 * 17 16 15 38 38 H 1.09000 * 109.46940 * 60.00168 * 19 18 17 39 39 H 1.08998 * 109.47160 * 179.97438 * 19 18 17 40 40 H 1.08994 * 109.46994 * 300.00126 * 19 18 17 41 41 H 1.09001 * 109.35444 * 289.32458 * 20 18 17 42 42 H 1.08992 * 109.36346 * 49.05001 * 20 18 17 43 43 H 1.08002 * 117.96903 * 162.84260 * 21 20 18 44 44 H 1.07998 * 117.95617 * 180.46964 * 22 21 20 45 45 H 1.08997 * 109.35921 * 103.10129 * 23 22 21 46 46 H 1.09004 * 109.36045 * 222.68426 * 23 22 21 47 47 H 1.09000 * 109.43774 * 289.48278 * 24 23 22 48 48 H 1.09003 * 109.80009 * 168.88248 * 24 23 22 49 49 H 1.07995 * 119.96695 * 179.70102 * 25 15 14 50 50 H 1.08003 * 120.03947 * 180.27310 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.3465 3.2568 -2.9126 8 14 3.7337 3.9288 -0.2529 9 1 5.1068 3.5070 0.1238 10 1 3.7496 5.3554 -0.6648 11 1 2.8271 3.7596 0.9110 12 6 2.1633 -1.2096 0.0005 13 6 1.4704 -2.4136 0.0005 14 6 2.1640 -3.6077 0.0005 15 6 3.5468 -3.6060 0.0000 16 6 4.3003 -4.9110 -0.0006 17 7 4.5446 -5.3348 -1.3858 18 6 5.2784 -6.6068 -1.4256 19 6 6.6260 -6.4454 -0.7193 20 6 4.4592 -7.6951 -0.7283 21 6 5.0637 -9.0437 -0.9887 22 6 5.9123 -9.2876 -1.9354 23 6 6.4174 -8.2537 -2.8986 24 6 5.5072 -7.0247 -2.8836 25 6 4.2399 -2.4093 0.0053 26 6 3.5525 -1.2115 -0.0004 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1383 0.5138 32 1 3.8233 4.0827 -3.0899 33 1 0.3903 -2.4156 -0.0003 34 1 1.6258 -4.5441 0.0001 35 1 3.7114 -5.6708 0.5133 36 1 5.2529 -4.7809 0.5129 37 1 3.6800 -5.4001 -1.9018 38 1 6.4600 -6.1558 0.3183 39 1 7.1678 -7.3907 -0.7500 40 1 7.2100 -5.6750 -1.2226 41 1 4.4467 -7.5060 0.3451 42 1 3.4384 -7.6793 -1.1099 43 1 4.7731 -9.8617 -0.3461 44 1 6.2793 -10.2981 -2.0384 45 1 7.4259 -7.9553 -2.6123 46 1 6.4393 -8.6760 -3.9033 47 1 4.5528 -7.2745 -3.3472 48 1 5.9803 -6.2081 -3.4289 49 1 5.3198 -2.4114 0.0097 50 1 4.0944 -0.2772 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839192428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:53 Heat of formation + Delta-G solvation = 30.455218 kcal Electronic energy + Delta-G solvation = -25836.655970 eV Core-core repulsion = 22441.920122 eV Total energy + Delta-G solvation = -3394.735848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.84359 -40.21688 -37.61929 -35.77544 -34.67696 -32.33220 -31.97921 -31.60015 -30.24554 -29.61917 -28.16396 -27.00372 -25.53065 -24.17590 -23.22211 -22.90660 -21.16544 -20.91836 -19.08219 -18.29144 -18.09467 -17.53433 -16.87660 -16.45051 -16.08447 -15.63006 -15.59559 -15.32943 -15.08134 -14.89686 -14.76403 -14.35476 -14.32362 -14.22920 -14.10931 -13.56406 -13.39290 -13.23138 -13.22334 -13.13305 -13.02838 -12.64053 -12.48271 -12.43398 -12.40551 -12.06529 -11.96590 -11.76004 -11.56182 -11.47181 -11.34905 -11.19730 -10.82572 -10.38745 -9.84440 -9.66739 -9.17326 -8.33595 -7.90513 -6.38890 0.70927 0.83386 1.33917 1.34868 1.44798 1.45403 2.30270 2.54470 2.99814 3.01099 3.46371 3.78464 3.89099 4.04222 4.06124 4.16869 4.21834 4.29394 4.41490 4.43929 4.45569 4.52550 4.60932 4.63183 4.69734 4.71765 4.75614 4.80009 4.81538 4.84166 4.90822 4.95817 5.01991 5.05854 5.10609 5.11231 5.17369 5.24526 5.30221 5.35723 5.45606 5.49661 5.60683 5.64726 5.78731 5.93901 6.09067 6.09462 6.20562 6.30371 6.56645 6.59912 6.69908 6.87651 7.26561 8.83995 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020011 B = 0.002624 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.921325 B =10667.649594 C =11355.630765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.629 5.629 3 C 0.232 3.768 4 C -0.535 4.535 5 H 0.024 0.976 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.947 3.053 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.243 1.243 12 C 0.211 3.789 13 C -0.215 4.215 14 C -0.062 4.062 15 C -0.156 4.156 16 C 0.118 3.882 17 N -0.685 5.685 18 C 0.115 3.885 19 C -0.138 4.138 20 C -0.115 4.115 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.090 4.090 24 C -0.107 4.107 25 C -0.057 4.057 26 C -0.217 4.217 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.028 0.972 32 H 0.268 0.732 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.341 0.659 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.120 0.880 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.409 -24.779 7.454 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.337 5.337 3 C 0.109 3.891 4 C -0.574 4.574 5 H 0.042 0.958 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.769 3.231 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.166 1.166 12 C 0.106 3.894 13 C -0.238 4.238 14 C -0.081 4.081 15 C -0.159 4.159 16 C -0.010 4.010 17 N -0.315 5.315 18 C 0.024 3.976 19 C -0.195 4.195 20 C -0.154 4.154 21 C -0.177 4.177 22 C -0.176 4.176 23 C -0.127 4.127 24 C -0.145 4.145 25 C -0.077 4.077 26 C -0.240 4.240 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.150 0.850 34 H 0.159 0.841 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.159 0.841 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.138 0.862 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.923 -24.050 7.289 25.300 hybrid contribution -0.403 0.571 0.068 0.703 sum 2.519 -23.479 7.357 24.733 Atomic orbital electron populations 1.21633 0.79142 1.02487 1.01306 1.46691 1.05625 1.03297 1.78118 1.19329 0.92577 0.82466 0.94724 1.21658 1.36426 1.06674 0.92654 0.95798 1.25881 0.95500 0.98810 0.98497 1.70066 1.42732 1.24436 1.21416 0.85731 0.79850 0.77806 0.79707 1.19073 1.20491 1.16623 1.18207 0.91623 0.86520 0.93010 1.20792 1.00061 0.90762 1.12197 1.20911 0.93420 0.97234 0.96580 1.19570 0.93542 0.94535 1.08248 1.20665 0.98671 0.91850 0.89782 1.60688 1.26967 1.30313 1.13552 1.20986 0.94129 0.86784 0.95663 1.21903 0.95824 1.01942 0.99874 1.21193 0.99269 0.93602 1.01335 1.22053 0.99089 0.97542 0.99019 1.22195 0.98831 0.99832 0.96735 1.20480 0.99331 0.93736 0.99146 1.21588 1.00147 0.97695 0.95095 1.20801 0.99355 0.91285 0.96233 1.20807 0.93148 0.98692 1.11358 0.91988 0.92622 0.90793 0.94627 0.95376 0.92313 0.84961 0.84116 0.93301 0.90570 0.84072 0.92716 0.91131 0.92938 0.90793 0.91127 0.87286 0.86834 0.90257 0.90171 0.92215 0.91691 0.86183 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.27 10.19 127.77 1.30 4.57 16 2 N -0.63 -26.63 2.99 -726.55 -2.17 -28.81 16 3 C 0.23 11.13 3.98 85.63 0.34 11.47 16 4 C -0.54 -31.21 9.94 25.60 0.25 -30.96 16 5 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 6 C 0.01 0.65 5.47 84.65 0.46 1.11 16 7 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 8 Si 0.95 43.44 27.47 68.60 1.88 45.33 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 12 C 0.21 8.44 6.55 38.22 0.25 8.69 16 13 C -0.22 -6.98 9.21 22.40 0.21 -6.78 16 14 C -0.06 -1.71 9.69 22.25 0.22 -1.50 16 15 C -0.16 -4.44 5.39 -19.84 -0.11 -4.55 16 16 C 0.12 2.59 5.05 85.56 0.43 3.03 16 17 N -0.68 -14.89 6.09 -473.45 -2.89 -17.78 16 18 C 0.12 2.05 0.72 3.66 0.00 2.05 16 19 C -0.14 -2.45 7.59 71.98 0.55 -1.90 16 20 C -0.12 -1.78 4.28 29.66 0.13 -1.65 16 21 C -0.16 -2.23 9.41 27.03 0.25 -1.98 16 22 C -0.16 -2.11 9.16 27.03 0.25 -1.86 16 23 C -0.09 -1.24 5.47 29.63 0.16 -1.07 16 24 C -0.11 -1.84 5.20 30.71 0.16 -1.68 16 25 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 26 C -0.22 -8.94 9.21 22.40 0.21 -8.73 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 28 H 0.05 1.98 8.07 -2.39 -0.02 1.96 16 29 H 0.07 2.19 6.20 -2.39 -0.01 2.17 16 30 H 0.04 1.64 7.13 -2.39 -0.02 1.63 16 31 H 0.03 1.35 5.62 -2.39 -0.01 1.34 16 32 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 33 H 0.13 3.71 6.14 -2.91 -0.02 3.69 16 34 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.05 0.91 6.52 -2.39 -0.02 0.90 16 36 H 0.08 1.68 6.26 -2.39 -0.01 1.66 16 37 H 0.34 7.40 8.71 -89.69 -0.78 6.62 16 38 H 0.05 0.96 6.42 -2.39 -0.02 0.95 16 39 H 0.07 1.10 5.72 -2.39 -0.01 1.09 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.12 7.00 -2.39 -0.02 1.11 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.11 1.30 8.06 -2.91 -0.02 1.28 16 44 H 0.11 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.08 1.06 6.94 -2.39 -0.02 1.04 16 46 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 48 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 50 H 0.10 4.53 6.14 -2.91 -0.02 4.51 16 Total: -1.00 -67.81 381.78 2.49 -65.32 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.09 Total: 28.81 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 5.28 Total: -33.50 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -4.76 Total: -105.96 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.33 kcal Total: -67.81 2.49 -65.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839192428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.774 kcal (2) G-P(sol) polarization free energy of solvation -67.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds