Wall clock time and date at job start Tue Mar 31 2020 11:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46914 * 2 1 4 4 C 1.53009 * 109.46760 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46760 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47585 * 304.99960 * 5 4 3 7 7 F 1.39899 * 109.47186 * 65.00325 * 5 4 3 8 8 C 1.50705 * 109.47101 * 184.99771 * 5 4 3 9 9 O 1.21287 * 119.99611 * 10.00416 * 8 5 4 10 10 N 1.34769 * 120.00213 * 190.00100 * 8 5 4 11 11 C 1.46505 * 120.00232 * 180.02562 * 10 8 5 12 12 C 1.52999 * 109.47399 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.50004 * 305.06935 * 12 11 10 14 14 C 1.53029 * 109.49848 * 184.99825 * 12 11 10 15 15 C 1.53047 * 109.52911 * 178.65842 * 14 12 11 16 16 C 1.53167 * 109.32342 * 61.37643 * 15 14 12 17 17 N 1.46924 * 108.76511 * 305.35609 * 16 15 14 18 18 C 1.36944 * 120.62885 * 233.62893 * 17 16 15 19 19 H 1.08001 * 119.99893 * 152.60039 * 18 17 16 20 20 C 1.38804 * 120.00084 * 332.60549 * 18 17 16 21 21 N 1.31621 * 120.00078 * 159.35740 * 20 18 17 22 22 Si 1.86799 * 119.99938 * 339.36118 * 20 18 17 23 23 H 1.48502 * 109.47406 * 92.90053 * 22 20 18 24 24 H 1.48504 * 109.47139 * 212.90194 * 22 20 18 25 25 H 1.48494 * 109.47265 * 332.89921 * 22 20 18 26 26 C 1.46927 * 118.74200 * 53.61048 * 17 16 15 27 27 H 1.09008 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46957 * 299.99771 * 1 2 3 29 29 H 1.08999 * 109.47251 * 59.99913 * 1 2 3 30 30 H 1.09004 * 109.46957 * 240.00229 * 2 1 3 31 31 H 1.08999 * 109.47251 * 120.00086 * 2 1 3 32 32 H 1.08994 * 109.47328 * 60.00841 * 3 2 1 33 33 H 1.08999 * 109.47232 * 300.00098 * 3 2 1 34 34 H 1.08995 * 109.47159 * 60.00432 * 4 3 2 35 35 H 1.08999 * 109.47175 * 299.99946 * 4 3 2 36 36 H 1.08997 * 109.47041 * 300.00678 * 6 5 4 37 37 H 1.09001 * 109.46723 * 59.99900 * 6 5 4 38 38 H 1.08998 * 109.47341 * 180.02562 * 6 5 4 39 39 H 0.96999 * 120.00214 * 359.97438 * 10 8 5 40 40 H 1.09004 * 109.46790 * 59.99962 * 11 10 8 41 41 H 1.08992 * 109.47150 * 300.00193 * 11 10 8 42 42 H 1.08994 * 109.46451 * 298.67747 * 14 12 11 43 43 H 1.09008 * 109.46122 * 58.65088 * 14 12 11 44 44 H 1.09001 * 109.49978 * 181.30990 * 15 14 12 45 45 H 1.08999 * 109.49526 * 301.41082 * 15 14 12 46 46 H 1.08992 * 109.58991 * 185.57128 * 16 15 14 47 47 H 1.09004 * 109.70724 * 65.20613 * 16 15 14 48 48 H 0.96998 * 119.99967 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.58754 * 186.60098 * 26 17 16 50 50 H 1.09004 * 109.70203 * 66.25247 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 3.4694 3.6424 -1.1809 7 9 3.7104 3.5097 1.1960 8 6 5.5818 2.8869 -0.1244 9 8 6.1699 1.8591 -0.3869 10 7 6.2715 4.0306 0.0559 11 6 7.7315 4.0326 -0.0656 12 6 8.2621 5.4458 0.1834 13 1 7.7682 6.1443 -0.4921 14 6 9.7718 5.4758 -0.0652 15 6 10.2979 6.8966 0.1512 16 6 10.0385 7.3178 1.6008 17 7 8.6078 7.1534 1.8920 18 6 7.8739 8.1947 2.3944 19 1 6.8123 8.2489 2.2030 20 6 8.4942 9.1804 3.1495 21 7 7.9240 10.3583 3.2901 22 14 10.1384 8.8352 3.9661 23 1 11.2383 9.2670 3.0666 24 1 10.2225 9.5841 5.2457 25 1 10.2616 7.3800 4.2354 26 6 7.9794 5.8506 1.6336 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 3.7573 3.1556 -2.1127 37 1 2.3831 3.6409 -1.0908 38 1 3.8331 4.6699 -1.1806 39 1 5.8012 4.8527 0.2654 40 1 8.0131 3.7106 -1.0682 41 1 8.1581 3.3493 0.6686 42 1 10.2675 4.7956 0.6274 43 1 9.9774 5.1646 -1.0895 44 1 11.3691 6.9224 -0.0486 45 1 9.7847 7.5813 -0.5240 46 1 10.3208 8.3621 1.7341 47 1 10.6229 6.6922 2.2756 48 1 8.3574 11.0470 3.8180 49 1 6.9031 5.9269 1.7885 50 1 8.3936 5.1023 2.3093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857136013.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:35 Heat of formation + Delta-G solvation = -94.812309 kcal Electronic energy + Delta-G solvation = -27258.948188 eV Core-core repulsion = 23428.011108 eV Total energy + Delta-G solvation = -3830.937080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.02945 -39.87349 -38.17501 -36.44121 -35.04607 -33.30227 -32.94440 -30.98961 -30.75062 -28.97175 -26.45028 -25.47491 -25.17973 -22.87893 -21.99083 -21.46905 -21.02746 -20.04860 -19.34934 -17.82450 -16.74782 -16.46377 -16.25849 -15.67166 -15.41231 -15.23246 -15.02898 -14.59789 -14.10445 -13.94559 -13.90497 -13.50306 -13.45398 -13.24740 -13.12429 -12.78610 -12.63393 -12.53896 -12.48777 -12.41876 -12.15816 -11.69461 -11.58763 -11.50399 -11.47725 -11.31503 -10.91454 -10.83432 -10.78105 -10.62727 -10.56925 -10.17423 -9.98513 -9.73580 -9.67833 -9.45493 -9.09953 -8.63270 -7.00358 -5.97240 -3.33298 2.36146 2.94565 3.30598 3.47510 3.50602 4.11245 4.21941 4.31352 4.51325 4.51570 4.71814 4.75749 4.81179 4.87749 5.09378 5.11287 5.18549 5.23951 5.24998 5.35470 5.39560 5.43968 5.47390 5.53304 5.58184 5.66755 5.72728 5.74204 5.75797 5.77220 5.89066 5.97925 6.01378 6.06521 6.07420 6.08354 6.25863 6.33045 6.38014 6.52645 6.55408 6.66093 6.68450 6.93749 7.37183 7.93165 8.00579 8.29801 8.91229 9.69694 10.07336 11.18627 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.002826 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.503893 B = 9906.423906 C =10751.124123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.124 4.124 4 C -0.125 4.125 5 C 0.106 3.894 6 C -0.175 4.175 7 F -0.192 7.192 8 C 0.499 3.501 9 O -0.532 6.532 10 N -0.712 5.712 11 C 0.126 3.874 12 C -0.120 4.120 13 H 0.079 0.921 14 C -0.100 4.100 15 C -0.134 4.134 16 C 0.123 3.877 17 N -0.605 5.605 18 C -0.261 4.261 19 H 0.085 0.915 20 C 0.024 3.976 21 N -0.908 5.908 22 Si 0.883 3.117 23 H -0.289 1.289 24 H -0.303 1.303 25 H -0.271 1.271 26 C 0.155 3.845 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.408 0.592 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.024 0.976 48 H 0.263 0.737 49 H 0.060 0.940 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.950 -17.280 -10.347 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.162 4.162 4 C -0.163 4.163 5 C 0.084 3.916 6 C -0.233 4.233 7 F -0.172 7.172 8 C 0.282 3.718 9 O -0.408 6.408 10 N -0.363 5.363 11 C 0.002 3.998 12 C -0.140 4.140 13 H 0.097 0.903 14 C -0.139 4.139 15 C -0.173 4.173 16 C -0.002 4.002 17 N -0.329 5.329 18 C -0.389 4.389 19 H 0.103 0.897 20 C -0.175 4.175 21 N -0.551 5.551 22 Si 0.714 3.286 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.196 1.196 26 C 0.029 3.971 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.243 0.757 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.042 0.958 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.530 -17.809 -10.401 22.318 hybrid contribution 0.788 0.472 0.761 1.193 sum -7.743 -17.337 -9.640 21.294 Atomic orbital electron populations 1.21776 0.95793 1.01568 1.01890 1.21504 0.95868 0.96536 1.02225 1.21727 0.94097 0.97462 1.02887 1.21975 0.96252 0.92917 1.05118 1.21196 0.91735 0.95319 0.83338 1.22455 1.02911 1.01150 0.96781 1.92936 1.92497 1.84074 1.47711 1.20775 0.89379 0.84012 0.77613 1.90710 1.70329 1.31891 1.47895 1.46076 1.08539 1.11392 1.70298 1.21511 0.78483 0.98213 1.01593 1.21954 0.96825 0.94186 1.01043 0.90303 1.21344 0.94361 0.97734 1.00424 1.21987 0.99407 0.96177 0.99721 1.21353 0.85879 1.00013 0.92963 1.44335 1.05489 1.08545 1.74490 1.18900 0.94076 0.99241 1.26684 0.89708 1.25268 0.97858 0.95947 0.98461 1.69834 1.40237 1.02822 1.42174 0.86945 0.84562 0.78252 0.78832 1.21636 1.23176 1.19615 1.20932 0.97328 0.87497 0.91352 0.92815 0.92654 0.92749 0.91922 0.91895 0.91219 0.91274 0.89138 0.90234 0.90077 0.89659 0.90634 0.75663 0.91562 0.91333 0.92300 0.92753 0.92657 0.91689 0.91002 0.95772 0.92756 0.92127 0.95833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.97 4.64 -26.73 -0.12 -1.10 16 4 C -0.12 -1.21 4.02 -26.73 -0.11 -1.32 16 5 C 0.11 1.15 1.20 -91.77 -0.11 1.04 16 6 C -0.18 -1.46 8.42 37.16 0.31 -1.15 16 7 F -0.19 -2.42 16.42 2.25 0.04 -2.38 16 8 C 0.50 6.66 6.79 -10.99 -0.07 6.58 16 9 O -0.53 -8.50 15.87 5.55 0.09 -8.41 16 10 N -0.71 -9.22 5.30 -60.29 -0.32 -9.54 16 11 C 0.13 1.69 5.07 -4.04 -0.02 1.67 16 12 C -0.12 -1.81 2.37 -90.51 -0.21 -2.02 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.10 -1.47 5.17 -26.69 -0.14 -1.61 16 15 C -0.13 -2.27 6.08 -26.62 -0.16 -2.44 16 16 C 0.12 2.65 4.21 -3.72 -0.02 2.63 16 17 N -0.61 -14.05 2.77 -172.34 -0.48 -14.52 16 18 C -0.26 -7.17 10.03 -15.06 -0.15 -7.32 16 19 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 20 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 21 N -0.91 -27.63 13.97 55.49 0.78 -26.85 16 22 Si 0.88 22.38 24.34 -169.99 -4.14 18.25 16 23 H -0.29 -7.04 6.62 56.52 0.37 -6.66 16 24 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 25 H -0.27 -6.79 6.63 56.52 0.37 -6.41 16 26 C 0.16 2.93 5.60 -3.71 -0.02 2.91 16 27 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.59 7.93 -51.93 -0.41 0.18 16 33 H 0.07 0.47 6.35 -51.93 -0.33 0.14 16 34 H 0.09 0.87 7.81 -51.93 -0.41 0.47 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.60 6.35 -51.93 -0.33 0.27 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.41 5.02 7.68 -40.82 -0.31 4.70 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 1.70 4.49 -51.93 -0.23 1.47 16 47 H 0.02 0.52 7.07 -51.93 -0.37 0.15 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.06 1.14 7.14 -51.93 -0.37 0.76 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -31.62 385.18 -8.08 -39.70 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -9.14 Total: 1.12 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.71 Total: -3.15 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.02 Total: -50.92 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.62 -8.08 -39.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857136013.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.116 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds