Wall clock time and date at job start Tue Mar 31 2020 11:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46914 * 2 1 4 4 C 1.53009 * 109.46760 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46760 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47585 * 304.99960 * 5 4 3 7 7 F 1.39899 * 109.47186 * 65.00325 * 5 4 3 8 8 C 1.50705 * 109.47101 * 184.99771 * 5 4 3 9 9 O 1.21287 * 119.99611 * 10.00416 * 8 5 4 10 10 N 1.34769 * 120.00213 * 190.00100 * 8 5 4 11 11 C 1.46505 * 120.00232 * 180.02562 * 10 8 5 12 12 C 1.52999 * 109.47399 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.50004 * 305.06935 * 12 11 10 14 14 C 1.53029 * 109.49848 * 184.99825 * 12 11 10 15 15 C 1.53047 * 109.52911 * 178.65842 * 14 12 11 16 16 C 1.53167 * 109.32342 * 61.37643 * 15 14 12 17 17 N 1.46924 * 108.76511 * 305.35609 * 16 15 14 18 18 C 1.36944 * 120.62885 * 233.62893 * 17 16 15 19 19 H 1.08001 * 119.99893 * 152.60039 * 18 17 16 20 20 C 1.38804 * 120.00084 * 332.60549 * 18 17 16 21 21 N 1.31621 * 120.00078 * 159.35740 * 20 18 17 22 22 Si 1.86799 * 119.99938 * 339.36118 * 20 18 17 23 23 H 1.48502 * 109.47406 * 92.90053 * 22 20 18 24 24 H 1.48504 * 109.47139 * 212.90194 * 22 20 18 25 25 H 1.48494 * 109.47265 * 332.89921 * 22 20 18 26 26 C 1.46927 * 118.74200 * 53.61048 * 17 16 15 27 27 H 1.09008 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46957 * 299.99771 * 1 2 3 29 29 H 1.08999 * 109.47251 * 59.99913 * 1 2 3 30 30 H 1.09004 * 109.46957 * 240.00229 * 2 1 3 31 31 H 1.08999 * 109.47251 * 120.00086 * 2 1 3 32 32 H 1.08994 * 109.47328 * 60.00841 * 3 2 1 33 33 H 1.08999 * 109.47232 * 300.00098 * 3 2 1 34 34 H 1.08995 * 109.47159 * 60.00432 * 4 3 2 35 35 H 1.08999 * 109.47175 * 299.99946 * 4 3 2 36 36 H 1.08997 * 109.47041 * 300.00678 * 6 5 4 37 37 H 1.09001 * 109.46723 * 59.99900 * 6 5 4 38 38 H 1.08998 * 109.47341 * 180.02562 * 6 5 4 39 39 H 0.96999 * 120.00214 * 359.97438 * 10 8 5 40 40 H 1.09004 * 109.46790 * 59.99962 * 11 10 8 41 41 H 1.08992 * 109.47150 * 300.00193 * 11 10 8 42 42 H 1.08994 * 109.46451 * 298.67747 * 14 12 11 43 43 H 1.09008 * 109.46122 * 58.65088 * 14 12 11 44 44 H 1.09001 * 109.49978 * 181.30990 * 15 14 12 45 45 H 1.08999 * 109.49526 * 301.41082 * 15 14 12 46 46 H 1.08992 * 109.58991 * 185.57128 * 16 15 14 47 47 H 1.09004 * 109.70724 * 65.20613 * 16 15 14 48 48 H 0.96998 * 119.99967 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.58754 * 186.60098 * 26 17 16 50 50 H 1.09004 * 109.70203 * 66.25247 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 3.4694 3.6424 -1.1809 7 9 3.7104 3.5097 1.1960 8 6 5.5818 2.8869 -0.1244 9 8 6.1699 1.8591 -0.3869 10 7 6.2715 4.0306 0.0559 11 6 7.7315 4.0326 -0.0656 12 6 8.2621 5.4458 0.1834 13 1 7.7682 6.1443 -0.4921 14 6 9.7718 5.4758 -0.0652 15 6 10.2979 6.8966 0.1512 16 6 10.0385 7.3178 1.6008 17 7 8.6078 7.1534 1.8920 18 6 7.8739 8.1947 2.3944 19 1 6.8123 8.2489 2.2030 20 6 8.4942 9.1804 3.1495 21 7 7.9240 10.3583 3.2901 22 14 10.1384 8.8352 3.9661 23 1 11.2383 9.2670 3.0666 24 1 10.2225 9.5841 5.2457 25 1 10.2616 7.3800 4.2354 26 6 7.9794 5.8506 1.6336 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 3.7573 3.1556 -2.1127 37 1 2.3831 3.6409 -1.0908 38 1 3.8331 4.6699 -1.1806 39 1 5.8012 4.8527 0.2654 40 1 8.0131 3.7106 -1.0682 41 1 8.1581 3.3493 0.6686 42 1 10.2675 4.7956 0.6274 43 1 9.9774 5.1646 -1.0895 44 1 11.3691 6.9224 -0.0486 45 1 9.7847 7.5813 -0.5240 46 1 10.3208 8.3621 1.7341 47 1 10.6229 6.6922 2.2756 48 1 8.3574 11.0470 3.8180 49 1 6.9031 5.9269 1.7885 50 1 8.3936 5.1023 2.3093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857136013.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:34 Heat of formation + Delta-G solvation = -114.017128 kcal Electronic energy + Delta-G solvation = -27259.780971 eV Core-core repulsion = 23428.011108 eV Total energy + Delta-G solvation = -3831.769863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.97806 -40.97444 -39.61365 -37.18713 -36.36079 -34.77491 -33.89371 -32.82761 -32.14326 -29.67435 -27.65890 -27.09413 -26.18739 -23.87873 -23.62397 -22.66685 -21.81661 -21.17288 -20.60940 -18.92772 -18.60646 -17.48031 -17.28363 -17.15639 -16.54043 -16.20150 -16.13599 -15.70805 -15.58452 -15.31169 -15.05521 -14.85779 -14.58902 -14.23208 -14.19669 -13.98976 -13.84310 -13.63564 -13.61584 -13.30020 -13.20078 -13.17139 -13.11003 -12.57442 -12.25268 -12.19899 -12.15624 -12.11592 -11.97036 -11.71908 -11.60979 -11.59519 -11.41031 -11.34052 -11.27603 -10.78855 -10.66567 -10.19476 -8.93993 -8.17596 -5.48906 1.27856 1.31276 1.39885 1.48390 1.94797 2.40269 3.04247 3.24454 3.29551 3.44358 3.46222 3.72655 3.82065 3.92929 3.99429 4.11441 4.13413 4.23752 4.29850 4.36888 4.48578 4.50810 4.60811 4.62081 4.73154 4.75477 4.77054 4.81094 4.81238 4.84059 4.92978 4.97252 5.04919 5.07275 5.09787 5.12863 5.15760 5.23969 5.27580 5.31616 5.35290 5.40760 5.49530 5.55772 5.85629 6.11702 6.31575 6.90896 6.95211 7.61593 8.02203 9.02134 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.002826 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.503893 B = 9906.423906 C =10751.124123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.121 4.121 5 C 0.104 3.896 6 C -0.173 4.173 7 F -0.204 7.204 8 C 0.497 3.503 9 O -0.559 6.559 10 N -0.712 5.712 11 C 0.134 3.866 12 C -0.104 4.104 13 H 0.075 0.925 14 C -0.098 4.098 15 C -0.126 4.126 16 C 0.115 3.885 17 N -0.620 5.620 18 C -0.246 4.246 19 H 0.055 0.945 20 C -0.035 4.035 21 N -0.956 5.956 22 Si 0.945 3.055 23 H -0.273 1.273 24 H -0.313 1.313 25 H -0.265 1.265 26 C 0.151 3.849 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.410 0.590 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.047 0.953 47 H 0.029 0.971 48 H 0.261 0.739 49 H 0.053 0.947 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.287 -19.100 -12.037 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.159 4.159 5 C 0.083 3.917 6 C -0.230 4.230 7 F -0.184 7.184 8 C 0.281 3.719 9 O -0.438 6.438 10 N -0.362 5.362 11 C 0.010 3.990 12 C -0.124 4.124 13 H 0.094 0.906 14 C -0.136 4.136 15 C -0.165 4.165 16 C -0.010 4.010 17 N -0.344 5.344 18 C -0.376 4.376 19 H 0.073 0.927 20 C -0.230 4.230 21 N -0.602 5.602 22 Si 0.775 3.225 23 H -0.200 1.200 24 H -0.242 1.242 25 H -0.190 1.190 26 C 0.026 3.974 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.246 0.754 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.854 -19.665 -12.114 24.395 hybrid contribution 0.525 0.993 1.265 1.691 sum -7.329 -18.672 -10.850 22.805 Atomic orbital electron populations 1.21771 0.95073 1.02038 1.02076 1.21506 0.96483 0.95954 1.02210 1.21704 0.92582 0.98127 1.03218 1.21960 0.97533 0.91951 1.04450 1.21356 0.90216 0.96395 0.83770 1.22487 1.03766 1.00798 0.95936 1.92914 1.92442 1.84378 1.48710 1.21205 0.90413 0.83460 0.76790 1.90693 1.71127 1.32721 1.49258 1.46114 1.08541 1.11577 1.69987 1.21398 0.78643 0.96675 1.02245 1.21741 0.97840 0.95021 0.97815 0.90630 1.21365 0.93281 0.96264 1.02660 1.21898 1.01312 0.97370 0.95956 1.21447 0.84567 0.98775 0.96214 1.44476 1.06257 1.09072 1.74590 1.18875 0.93291 0.99956 1.25464 0.92711 1.25876 1.01591 0.95840 0.99692 1.69958 1.42398 1.03901 1.43951 0.85937 0.81234 0.77986 0.77377 1.20002 1.24186 1.19020 1.21088 0.96699 0.85544 0.94049 0.92252 0.92939 0.92094 0.91389 0.92524 0.92009 0.89752 0.88925 0.91786 0.88871 0.88042 0.90629 0.75358 0.90039 0.91847 0.91546 0.89462 0.89865 0.92542 0.93522 0.95269 0.93002 0.92862 0.95645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.12 -1.59 5.93 30.59 0.18 -1.41 16 3 C -0.12 -1.70 4.64 30.60 0.14 -1.55 16 4 C -0.12 -2.23 4.02 30.60 0.12 -2.11 16 5 C 0.10 2.15 1.20 -11.54 -0.01 2.13 16 6 C -0.17 -2.54 8.42 71.98 0.61 -1.93 16 7 F -0.20 -5.05 16.42 44.97 0.74 -4.31 16 8 C 0.50 12.71 6.79 87.66 0.60 13.31 16 9 O -0.56 -17.27 15.87 -3.05 -0.05 -17.32 16 10 N -0.71 -17.50 5.30 -463.05 -2.46 -19.95 16 11 C 0.13 3.29 5.07 86.38 0.44 3.73 16 12 C -0.10 -2.90 2.37 -10.72 -0.03 -2.93 16 13 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 14 C -0.10 -2.50 5.17 30.62 0.16 -2.34 16 15 C -0.13 -3.92 6.08 30.67 0.19 -3.73 16 16 C 0.11 4.72 4.21 86.35 0.36 5.09 16 17 N -0.62 -28.46 2.77 -699.15 -1.94 -30.40 16 18 C -0.25 -13.80 10.03 84.03 0.84 -12.96 16 19 H 0.06 3.33 8.06 -2.91 -0.02 3.30 16 20 C -0.04 -2.06 5.23 84.86 0.44 -1.61 16 21 N -0.96 -59.97 13.97 21.65 0.30 -59.66 16 22 Si 0.95 46.85 24.34 68.60 1.67 48.52 16 23 H -0.27 -12.73 6.62 99.48 0.66 -12.07 16 24 H -0.31 -15.83 7.11 99.48 0.71 -15.13 16 25 H -0.27 -12.72 6.63 99.48 0.66 -12.06 16 26 C 0.15 5.57 5.60 86.36 0.48 6.06 16 27 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.05 0.60 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.99 7.93 -2.39 -0.02 0.97 16 33 H 0.08 0.95 6.35 -2.39 -0.02 0.93 16 34 H 0.09 1.67 7.81 -2.39 -0.02 1.66 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.17 6.35 -2.39 -0.02 1.16 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.41 9.75 7.68 -92.71 -0.71 9.04 16 40 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.05 2.15 4.49 -2.39 -0.01 2.14 16 47 H 0.03 1.18 7.07 -2.38 -0.02 1.16 16 48 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 49 H 0.05 2.00 7.14 -2.39 -0.02 1.98 16 50 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -69.32 385.18 3.61 -65.71 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.10 Total: 18.65 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.24 Total: -1.24 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -4.09 Total: -110.01 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.05 Total: -17.32 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.74 Total: -4.31 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.67 Total: 48.52 kcal Total: -69.32 3.61 -65.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857136013.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.308 kcal (2) G-P(sol) polarization free energy of solvation -69.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds