Wall clock time and date at job start Tue Mar 31 2020 11:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.47010 * 2 1 4 4 C 1.52999 * 109.46819 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46819 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47169 * 60.00044 * 5 4 3 7 7 F 1.39900 * 109.46993 * 299.99813 * 5 4 3 8 8 C 1.50701 * 109.46879 * 179.97438 * 5 4 3 9 9 O 1.21283 * 119.99983 * 355.00332 * 8 5 4 10 10 N 1.34776 * 119.99944 * 175.00097 * 8 5 4 11 11 C 1.46493 * 120.00008 * 180.02562 * 10 8 5 12 12 C 1.53000 * 109.47099 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.50266 * 54.93014 * 12 11 10 14 14 C 1.53041 * 109.49806 * 174.99990 * 12 11 10 15 15 C 1.53038 * 109.53936 * 181.31575 * 14 12 11 16 16 C 1.53195 * 109.31335 * 298.63391 * 15 14 12 17 17 N 1.46923 * 108.77676 * 54.62893 * 16 15 14 18 18 C 1.36943 * 120.62782 * 126.41546 * 17 16 15 19 19 H 1.08000 * 119.99759 * 332.76156 * 18 17 16 20 20 C 1.38813 * 119.99746 * 152.75972 * 18 17 16 21 21 N 1.31613 * 119.99810 * 159.74683 * 20 18 17 22 22 Si 1.86803 * 120.00247 * 339.74662 * 20 18 17 23 23 H 1.48497 * 109.47010 * 94.90033 * 22 20 18 24 24 H 1.48491 * 109.47241 * 214.90567 * 22 20 18 25 25 H 1.48497 * 109.46822 * 334.90567 * 22 20 18 26 26 C 1.46924 * 118.74164 * 306.40088 * 17 16 15 27 27 H 1.09004 * 109.46517 * 60.00150 * 1 2 3 28 28 H 1.09003 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46946 * 300.00323 * 1 2 3 30 30 H 1.08996 * 109.46946 * 239.99677 * 2 1 3 31 31 H 1.08994 * 109.46908 * 119.99519 * 2 1 3 32 32 H 1.08998 * 109.47073 * 59.99778 * 3 2 1 33 33 H 1.09004 * 109.46949 * 299.99683 * 3 2 1 34 34 H 1.08998 * 109.47427 * 60.00059 * 4 3 2 35 35 H 1.09004 * 109.47154 * 299.99622 * 4 3 2 36 36 H 1.09007 * 109.47384 * 299.99782 * 6 5 4 37 37 H 1.09004 * 109.47427 * 59.99996 * 6 5 4 38 38 H 1.09003 * 109.47292 * 179.97438 * 6 5 4 39 39 H 0.97002 * 119.99809 * 359.97438 * 10 8 5 40 40 H 1.09004 * 109.46998 * 299.99573 * 11 10 8 41 41 H 1.08998 * 109.47801 * 59.99770 * 11 10 8 42 42 H 1.09005 * 109.45592 * 301.32847 * 14 12 11 43 43 H 1.08991 * 109.46629 * 61.30676 * 14 12 11 44 44 H 1.09002 * 109.50119 * 58.58253 * 15 14 12 45 45 H 1.08996 * 109.50452 * 178.64698 * 15 14 12 46 46 H 1.08997 * 109.59127 * 174.42340 * 16 15 14 47 47 H 1.09008 * 109.58256 * 294.84809 * 16 15 14 48 48 H 0.97004 * 120.00287 * 180.02562 * 21 20 18 49 49 H 1.09003 * 109.58365 * 293.81713 * 26 17 16 50 50 H 1.08998 * 109.58763 * 173.39397 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0000 6 6 3.5695 3.6070 1.2485 7 9 3.6142 3.5438 -1.1429 8 6 5.5870 2.8850 0.0013 9 8 6.1933 1.8387 0.0940 10 7 6.2610 4.0477 -0.1007 11 6 7.7260 4.0476 -0.1001 12 6 8.2361 5.4846 -0.2256 13 1 7.8004 6.0958 0.5648 14 6 9.7612 5.4980 -0.0999 15 6 10.2698 6.9385 -0.1926 16 6 9.8921 7.5223 -1.5576 17 7 8.4421 7.3809 -1.7476 18 6 7.6707 8.4670 -2.0649 19 1 7.9809 9.4564 -1.7627 20 6 6.4902 8.2963 -2.7750 21 7 5.5623 9.2291 -2.7430 22 14 6.2186 6.7426 -3.7759 23 1 5.4601 5.7572 -2.9642 24 1 5.4482 7.0719 -5.0018 25 1 7.5318 6.1635 -4.1571 26 6 7.8353 6.0519 -1.5911 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.9338 0.9286 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 2.4795 3.6071 1.2481 37 1 3.9325 3.0937 2.1390 38 1 3.9332 4.6346 1.2483 39 1 5.7761 4.8845 -0.1753 40 1 8.0888 3.6138 0.8318 41 1 8.0898 3.4577 -0.9413 42 1 10.0501 5.0721 0.8610 43 1 10.1973 4.9068 -0.9050 44 1 9.8150 7.5364 0.5973 45 1 11.3537 6.9497 -0.0789 46 1 10.1639 8.5773 -1.5917 47 1 10.4181 6.9817 -2.3445 48 1 4.7372 9.1097 -3.2389 49 1 8.1937 5.3914 -2.3806 50 1 6.7501 6.1367 -1.6473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857136014.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:38 Heat of formation + Delta-G solvation = -94.917518 kcal Electronic energy + Delta-G solvation = -27846.739735 eV Core-core repulsion = 24015.798093 eV Total energy + Delta-G solvation = -3830.941642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -47.91637 -39.80415 -38.17120 -36.33953 -34.91518 -33.27548 -32.98521 -31.15881 -30.57373 -28.92518 -26.30157 -25.34173 -25.21723 -22.95626 -22.24887 -21.11122 -20.93144 -19.94896 -19.34833 -17.72159 -16.86310 -16.40432 -16.20586 -15.66680 -15.44282 -15.15083 -14.75273 -14.45439 -14.16217 -13.90359 -13.83802 -13.45295 -13.35267 -13.29893 -13.02375 -12.86752 -12.65075 -12.48388 -12.41439 -12.33265 -12.09289 -11.64303 -11.54490 -11.49125 -11.39495 -11.25208 -10.83969 -10.81939 -10.69888 -10.62028 -10.54390 -10.14767 -9.97187 -9.72786 -9.67437 -9.46569 -9.01893 -8.64499 -7.00649 -5.98005 -3.34111 2.43685 3.03474 3.32097 3.49482 3.50376 4.19623 4.31204 4.40112 4.49883 4.58740 4.77662 4.79143 4.86974 4.94119 5.12630 5.16612 5.20699 5.26796 5.33033 5.41120 5.41808 5.51362 5.54731 5.57283 5.60793 5.71135 5.78375 5.79445 5.80478 5.82271 5.95689 5.99184 6.06455 6.08298 6.09035 6.14914 6.26943 6.30279 6.42600 6.52147 6.55470 6.65872 6.67461 6.93534 7.44952 7.92709 8.07841 8.29875 8.90955 9.68905 10.06860 11.17696 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.003845 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.377505 B = 7281.205444 C = 8497.265654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.125 4.125 4 C -0.122 4.122 5 C 0.103 3.897 6 C -0.176 4.176 7 F -0.190 7.190 8 C 0.499 3.501 9 O -0.532 6.532 10 N -0.713 5.713 11 C 0.124 3.876 12 C -0.120 4.120 13 H 0.080 0.920 14 C -0.100 4.100 15 C -0.134 4.134 16 C 0.146 3.854 17 N -0.606 5.606 18 C -0.261 4.261 19 H 0.086 0.914 20 C 0.025 3.975 21 N -0.907 5.907 22 Si 0.876 3.124 23 H -0.284 1.284 24 H -0.303 1.303 25 H -0.271 1.271 26 C 0.133 3.867 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.408 0.592 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.022 0.978 48 H 0.263 0.737 49 H 0.027 0.973 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 -14.929 9.185 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.162 4.162 4 C -0.161 4.161 5 C 0.082 3.918 6 C -0.233 4.233 7 F -0.170 7.170 8 C 0.283 3.717 9 O -0.409 6.409 10 N -0.364 5.364 11 C 0.000 4.000 12 C -0.140 4.140 13 H 0.099 0.901 14 C -0.139 4.139 15 C -0.174 4.174 16 C 0.020 3.980 17 N -0.329 5.329 18 C -0.389 4.389 19 H 0.104 0.896 20 C -0.174 4.174 21 N -0.550 5.550 22 Si 0.706 3.294 23 H -0.212 1.212 24 H -0.231 1.231 25 H -0.196 1.196 26 C 0.007 3.993 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.244 0.756 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.040 0.960 48 H 0.073 0.927 49 H 0.044 0.956 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.194 -15.547 9.139 18.315 hybrid contribution -0.513 -0.315 -0.829 1.024 sum -3.706 -15.862 8.310 18.287 Atomic orbital electron populations 1.21777 0.95803 1.01518 1.01918 1.21499 0.95859 0.96523 1.02174 1.21711 0.94097 0.97427 1.02971 1.21954 0.96225 0.92867 1.05006 1.21216 0.90840 0.94865 0.84881 1.22457 1.03524 1.01547 0.95799 1.92954 1.89562 1.82510 1.52017 1.20781 0.89651 0.84244 0.77063 1.90694 1.69638 1.31192 1.49364 1.46120 1.08248 1.09350 1.72683 1.21529 0.78488 0.98052 1.01922 1.21992 0.96765 0.93708 1.01575 0.90116 1.21342 0.94128 0.97576 1.00814 1.21990 0.99169 0.95885 1.00309 1.20959 0.84710 0.99133 0.93165 1.44338 1.02365 1.04693 1.81479 1.18935 1.02551 0.87633 1.29808 0.89610 1.25260 0.96687 0.96839 0.98624 1.69822 1.06672 1.34982 1.43504 0.87053 0.77819 0.83799 0.80707 1.21181 1.23087 1.19645 1.21377 0.97946 0.87201 0.92738 0.92655 0.92830 0.92737 0.91918 0.91944 0.91322 0.91161 0.90169 0.89346 0.89704 0.90066 0.90557 0.75582 0.91371 0.91465 0.92744 0.92305 0.91933 0.92545 0.91893 0.96020 0.92727 0.95561 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.01 5.93 -26.72 -0.16 -1.17 16 3 C -0.12 -1.17 4.74 -26.73 -0.13 -1.30 16 4 C -0.12 -1.39 3.84 -26.73 -0.10 -1.49 16 5 C 0.10 1.36 1.18 -91.77 -0.11 1.26 16 6 C -0.18 -1.81 8.53 37.15 0.32 -1.49 16 7 F -0.19 -3.01 16.27 2.25 0.04 -2.98 16 8 C 0.50 7.79 6.82 -10.99 -0.07 7.71 16 9 O -0.53 -9.38 15.98 5.56 0.09 -9.29 16 10 N -0.71 -11.18 5.29 -60.30 -0.32 -11.50 16 11 C 0.12 1.89 5.07 -4.05 -0.02 1.87 16 12 C -0.12 -1.98 2.37 -90.50 -0.21 -2.20 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 14 C -0.10 -1.47 5.17 -26.69 -0.14 -1.61 16 15 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 16 C 0.15 2.81 6.52 -3.71 -0.02 2.78 16 17 N -0.61 -14.06 2.77 -172.32 -0.48 -14.54 16 18 C -0.26 -7.17 10.04 -15.06 -0.15 -7.32 16 19 H 0.09 2.51 8.05 -52.49 -0.42 2.09 16 20 C 0.02 0.71 5.24 -17.43 -0.09 0.62 16 21 N -0.91 -27.41 13.97 55.49 0.78 -26.64 16 22 Si 0.88 22.45 24.35 -169.99 -4.14 18.31 16 23 H -0.28 -7.03 6.70 56.52 0.38 -6.65 16 24 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 25 H -0.27 -6.92 6.45 56.52 0.36 -6.55 16 26 C 0.13 2.81 3.28 -3.71 -0.01 2.80 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 33 H 0.07 0.73 7.80 -51.93 -0.41 0.33 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.94 8.04 -51.93 -0.42 0.53 16 36 H 0.08 0.75 6.43 -51.93 -0.33 0.41 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 39 H 0.41 6.47 7.49 -40.82 -0.31 6.17 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 47 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.03 0.58 6.98 -51.93 -0.36 0.21 16 50 H 0.07 1.60 3.71 -51.93 -0.19 1.40 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -31.65 384.85 -8.07 -39.72 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -9.13 Total: 3.66 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.70 Total: -2.55 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.02 Total: -52.67 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.65 -8.07 -39.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857136014.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.200 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds