Wall clock time and date at job start Tue Mar 31 2020 11:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.47010 * 2 1 4 4 C 1.52999 * 109.46819 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46819 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47169 * 60.00044 * 5 4 3 7 7 F 1.39900 * 109.46993 * 299.99813 * 5 4 3 8 8 C 1.50701 * 109.46879 * 179.97438 * 5 4 3 9 9 O 1.21283 * 119.99983 * 355.00332 * 8 5 4 10 10 N 1.34776 * 119.99944 * 175.00097 * 8 5 4 11 11 C 1.46493 * 120.00008 * 180.02562 * 10 8 5 12 12 C 1.53000 * 109.47099 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.50266 * 54.93014 * 12 11 10 14 14 C 1.53041 * 109.49806 * 174.99990 * 12 11 10 15 15 C 1.53038 * 109.53936 * 181.31575 * 14 12 11 16 16 C 1.53195 * 109.31335 * 298.63391 * 15 14 12 17 17 N 1.46923 * 108.77676 * 54.62893 * 16 15 14 18 18 C 1.36943 * 120.62782 * 126.41546 * 17 16 15 19 19 H 1.08000 * 119.99759 * 332.76156 * 18 17 16 20 20 C 1.38813 * 119.99746 * 152.75972 * 18 17 16 21 21 N 1.31613 * 119.99810 * 159.74683 * 20 18 17 22 22 Si 1.86803 * 120.00247 * 339.74662 * 20 18 17 23 23 H 1.48497 * 109.47010 * 94.90033 * 22 20 18 24 24 H 1.48491 * 109.47241 * 214.90567 * 22 20 18 25 25 H 1.48497 * 109.46822 * 334.90567 * 22 20 18 26 26 C 1.46924 * 118.74164 * 306.40088 * 17 16 15 27 27 H 1.09004 * 109.46517 * 60.00150 * 1 2 3 28 28 H 1.09003 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46946 * 300.00323 * 1 2 3 30 30 H 1.08996 * 109.46946 * 239.99677 * 2 1 3 31 31 H 1.08994 * 109.46908 * 119.99519 * 2 1 3 32 32 H 1.08998 * 109.47073 * 59.99778 * 3 2 1 33 33 H 1.09004 * 109.46949 * 299.99683 * 3 2 1 34 34 H 1.08998 * 109.47427 * 60.00059 * 4 3 2 35 35 H 1.09004 * 109.47154 * 299.99622 * 4 3 2 36 36 H 1.09007 * 109.47384 * 299.99782 * 6 5 4 37 37 H 1.09004 * 109.47427 * 59.99996 * 6 5 4 38 38 H 1.09003 * 109.47292 * 179.97438 * 6 5 4 39 39 H 0.97002 * 119.99809 * 359.97438 * 10 8 5 40 40 H 1.09004 * 109.46998 * 299.99573 * 11 10 8 41 41 H 1.08998 * 109.47801 * 59.99770 * 11 10 8 42 42 H 1.09005 * 109.45592 * 301.32847 * 14 12 11 43 43 H 1.08991 * 109.46629 * 61.30676 * 14 12 11 44 44 H 1.09002 * 109.50119 * 58.58253 * 15 14 12 45 45 H 1.08996 * 109.50452 * 178.64698 * 15 14 12 46 46 H 1.08997 * 109.59127 * 174.42340 * 16 15 14 47 47 H 1.09008 * 109.58256 * 294.84809 * 16 15 14 48 48 H 0.97004 * 120.00287 * 180.02562 * 21 20 18 49 49 H 1.09003 * 109.58365 * 293.81713 * 26 17 16 50 50 H 1.08998 * 109.58763 * 173.39397 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0000 6 6 3.5695 3.6070 1.2485 7 9 3.6142 3.5438 -1.1429 8 6 5.5870 2.8850 0.0013 9 8 6.1933 1.8387 0.0940 10 7 6.2610 4.0477 -0.1007 11 6 7.7260 4.0476 -0.1001 12 6 8.2361 5.4846 -0.2256 13 1 7.8004 6.0958 0.5648 14 6 9.7612 5.4980 -0.0999 15 6 10.2698 6.9385 -0.1926 16 6 9.8921 7.5223 -1.5576 17 7 8.4421 7.3809 -1.7476 18 6 7.6707 8.4670 -2.0649 19 1 7.9809 9.4564 -1.7627 20 6 6.4902 8.2963 -2.7750 21 7 5.5623 9.2291 -2.7430 22 14 6.2186 6.7426 -3.7759 23 1 5.4601 5.7572 -2.9642 24 1 5.4482 7.0719 -5.0018 25 1 7.5318 6.1635 -4.1571 26 6 7.8353 6.0519 -1.5911 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.9338 0.9286 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 2.4795 3.6071 1.2481 37 1 3.9325 3.0937 2.1390 38 1 3.9332 4.6346 1.2483 39 1 5.7761 4.8845 -0.1753 40 1 8.0888 3.6138 0.8318 41 1 8.0898 3.4577 -0.9413 42 1 10.0501 5.0721 0.8610 43 1 10.1973 4.9068 -0.9050 44 1 9.8150 7.5364 0.5973 45 1 11.3537 6.9497 -0.0789 46 1 10.1639 8.5773 -1.5917 47 1 10.4181 6.9817 -2.3445 48 1 4.7372 9.1097 -3.2389 49 1 8.1937 5.3914 -2.3806 50 1 6.7501 6.1367 -1.6473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857136014.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:37 Heat of formation + Delta-G solvation = -114.177771 kcal Electronic energy + Delta-G solvation = -27847.574922 eV Core-core repulsion = 24015.798093 eV Total energy + Delta-G solvation = -3831.776829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.06449 -41.05104 -39.64485 -37.18506 -36.30951 -34.89553 -33.98704 -32.86443 -32.10765 -29.73954 -27.54453 -27.15347 -26.21434 -24.30999 -23.49122 -22.38304 -21.88956 -21.19965 -20.69664 -18.94925 -18.77917 -17.55866 -17.35316 -17.21789 -16.44378 -16.28257 -16.09386 -15.79944 -15.65617 -15.38150 -14.98124 -14.81375 -14.62731 -14.49328 -14.25643 -13.97194 -13.87149 -13.65044 -13.59854 -13.38994 -13.23543 -13.18256 -13.10201 -12.60099 -12.32001 -12.22063 -12.15958 -12.11572 -12.01129 -11.71663 -11.64575 -11.60491 -11.44344 -11.38624 -11.28726 -10.85942 -10.68738 -10.27197 -8.94465 -8.19550 -5.49955 1.22598 1.25161 1.36644 1.42826 1.88893 2.35689 3.01312 3.18168 3.29763 3.38503 3.40510 3.66422 3.79196 3.88640 3.94848 4.07678 4.09078 4.26500 4.29297 4.42454 4.45116 4.46221 4.55015 4.57005 4.68142 4.69437 4.72764 4.76662 4.80041 4.85580 4.89294 4.96241 5.00723 5.06775 5.08466 5.11348 5.14516 5.22467 5.28293 5.28878 5.32499 5.37351 5.46635 5.57925 5.85333 6.11039 6.20932 6.85079 6.90033 7.60679 8.01643 9.00142 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.003845 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.377505 B = 7281.205444 C = 8497.265654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.120 4.120 4 C -0.117 4.117 5 C 0.097 3.903 6 C -0.172 4.172 7 F -0.208 7.208 8 C 0.496 3.504 9 O -0.554 6.554 10 N -0.717 5.717 11 C 0.128 3.872 12 C -0.106 4.106 13 H 0.077 0.923 14 C -0.098 4.098 15 C -0.124 4.124 16 C 0.137 3.863 17 N -0.620 5.620 18 C -0.245 4.245 19 H 0.057 0.943 20 C -0.025 4.025 21 N -0.951 5.951 22 Si 0.933 3.067 23 H -0.275 1.275 24 H -0.314 1.314 25 H -0.269 1.269 26 C 0.130 3.870 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.406 0.594 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.031 0.969 48 H 0.261 0.739 49 H 0.021 0.979 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 -17.019 10.907 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.155 4.155 5 C 0.076 3.924 6 C -0.230 4.230 7 F -0.189 7.189 8 C 0.281 3.719 9 O -0.433 6.433 10 N -0.367 5.367 11 C 0.005 3.995 12 C -0.127 4.127 13 H 0.095 0.905 14 C -0.136 4.136 15 C -0.163 4.163 16 C 0.012 3.988 17 N -0.345 5.345 18 C -0.374 4.374 19 H 0.075 0.925 20 C -0.221 4.221 21 N -0.598 5.598 22 Si 0.763 3.237 23 H -0.202 1.202 24 H -0.243 1.243 25 H -0.194 1.194 26 C 0.005 3.995 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.242 0.758 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.070 0.930 49 H 0.039 0.961 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.374 -17.666 10.879 20.882 hybrid contribution -0.652 0.385 -1.346 1.545 sum -3.026 -17.281 9.533 19.966 Atomic orbital electron populations 1.21773 0.95050 1.02114 1.02017 1.21496 0.96498 0.95645 1.02336 1.21694 0.92596 0.98353 1.03089 1.21944 0.97493 0.91483 1.04608 1.21487 0.89333 0.96229 0.85333 1.22489 1.04597 1.01019 0.94848 1.92916 1.89617 1.83019 1.53350 1.21210 0.90690 0.83727 0.76294 1.90675 1.70372 1.31779 1.50450 1.46229 1.08572 1.09407 1.72533 1.21511 0.78344 0.96924 1.02721 1.21812 0.98596 0.94087 0.98171 0.90466 1.21380 0.92112 0.97150 1.02958 1.21888 1.01269 0.96009 0.97150 1.21200 0.82313 0.99366 0.95907 1.44503 1.03959 1.04320 1.81683 1.18899 1.02418 0.88036 1.28090 0.92527 1.25740 0.96901 0.99335 1.00076 1.69928 1.07419 1.37164 1.45247 0.86127 0.77550 0.81145 0.78852 1.20154 1.24347 1.19365 1.21366 0.96558 0.86175 0.95393 0.93161 0.92025 0.92051 0.92552 0.91036 0.89750 0.92459 0.91875 0.88406 0.88011 0.88267 0.91072 0.75814 0.89233 0.92097 0.89388 0.91638 0.92680 0.89150 0.92715 0.95138 0.92960 0.96078 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.26 16 2 C -0.12 -1.81 5.93 30.60 0.18 -1.63 16 3 C -0.12 -2.08 4.74 30.60 0.15 -1.93 16 4 C -0.12 -2.52 3.84 30.60 0.12 -2.41 16 5 C 0.10 2.46 1.18 -11.54 -0.01 2.45 16 6 C -0.17 -3.22 8.53 71.98 0.61 -2.60 16 7 F -0.21 -6.55 16.27 44.97 0.73 -5.81 16 8 C 0.50 14.90 6.82 87.66 0.60 15.49 16 9 O -0.55 -18.82 15.98 -3.04 -0.05 -18.87 16 10 N -0.72 -21.56 5.29 -463.07 -2.45 -24.01 16 11 C 0.13 3.63 5.07 86.38 0.44 4.06 16 12 C -0.11 -3.28 2.37 -10.72 -0.03 -3.30 16 13 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 14 C -0.10 -2.50 5.17 30.62 0.16 -2.34 16 15 C -0.12 -3.46 6.08 30.67 0.19 -3.28 16 16 C 0.14 5.04 6.52 86.36 0.56 5.60 16 17 N -0.62 -28.52 2.77 -699.09 -1.94 -30.46 16 18 C -0.24 -13.69 10.04 84.03 0.84 -12.85 16 19 H 0.06 3.44 8.05 -2.91 -0.02 3.42 16 20 C -0.03 -1.47 5.24 84.86 0.44 -1.03 16 21 N -0.95 -59.25 13.97 21.65 0.30 -58.94 16 22 Si 0.93 47.53 24.35 68.60 1.67 49.20 16 23 H -0.27 -13.38 6.70 99.48 0.67 -12.71 16 24 H -0.31 -16.46 7.11 99.48 0.71 -15.75 16 25 H -0.27 -13.37 6.45 99.48 0.64 -12.73 16 26 C 0.13 5.36 3.28 86.36 0.28 5.64 16 27 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.19 6.43 -2.39 -0.02 1.18 16 33 H 0.06 1.15 7.80 -2.39 -0.02 1.13 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.91 8.04 -2.39 -0.02 1.89 16 36 H 0.10 1.55 6.43 -2.38 -0.02 1.53 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.41 7.92 -2.39 -0.02 1.39 16 39 H 0.41 12.62 7.49 -92.71 -0.69 11.92 16 40 H 0.09 2.19 8.14 -2.38 -0.02 2.18 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 47 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 48 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 49 H 0.02 0.90 6.98 -2.39 -0.02 0.88 16 50 H 0.05 2.15 3.71 -2.39 -0.01 2.14 16 Total: -1.00 -69.53 384.85 3.62 -65.91 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.10 Total: 22.37 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 5.25 Total: 0.62 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -4.09 Total: -113.42 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.05 Total: -18.87 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.73 Total: -5.81 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.67 Total: 49.20 kcal Total: -69.53 3.62 -65.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857136014.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.268 kcal (2) G-P(sol) polarization free energy of solvation -69.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds