Wall clock time and date at job start Tue Mar 31 2020 11:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.46764 * 2 1 4 4 C 1.38288 * 119.92591 * 90.00387 * 3 2 1 5 5 C 1.38096 * 120.07631 * 179.97438 * 4 3 2 6 6 C 1.38920 * 119.92523 * 359.97438 * 5 4 3 7 7 N 1.39674 * 120.07492 * 179.97438 * 6 5 4 8 8 C 1.46955 * 110.99844 * 180.02562 * 7 6 5 9 9 C 1.53051 * 109.36481 * 183.18754 * 8 7 6 10 10 N 1.46952 * 109.36256 * 301.59677 * 9 8 7 11 11 C 1.46903 * 110.99696 * 183.18475 * 10 9 8 12 12 C 1.53003 * 109.47021 * 160.86208 * 11 10 9 13 13 C 1.50707 * 115.54649 * 60.49312 * 12 11 10 14 14 H 1.07996 * 119.99924 * 232.83183 * 13 12 11 15 15 C 1.37883 * 119.99857 * 52.83772 * 13 12 11 16 16 N 1.31520 * 119.99743 * 5.88242 * 15 13 12 17 17 Si 1.86791 * 119.99997 * 186.16073 * 15 13 12 18 18 H 1.48503 * 109.47579 * 59.99697 * 17 15 13 19 19 H 1.48501 * 109.47389 * 180.02562 * 17 15 13 20 20 H 1.48511 * 109.47161 * 299.99763 * 17 15 13 21 21 C 1.52998 * 117.50177 * 206.16370 * 12 11 10 22 22 C 1.53000 * 117.50282 * 274.82567 * 12 11 10 23 23 C 1.46955 * 110.87958 * 59.32192 * 10 9 8 24 24 C 1.46952 * 110.99858 * 303.79804 * 7 6 5 25 25 C 1.38912 * 119.84678 * 0.25464 * 6 5 4 26 26 C 1.38105 * 119.92602 * 359.49158 * 25 6 5 27 27 H 1.09000 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46986 * 300.00411 * 1 2 3 29 29 H 1.09007 * 109.47210 * 59.99713 * 1 2 3 30 30 H 1.08998 * 109.47218 * 240.00032 * 2 1 3 31 31 H 1.08998 * 109.46999 * 119.99708 * 2 1 3 32 32 H 1.08007 * 119.95915 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.04258 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.49083 * 63.22027 * 8 7 6 35 35 H 1.09010 * 109.50604 * 303.16876 * 8 7 6 36 36 H 1.09004 * 109.48919 * 181.62683 * 9 8 7 37 37 H 1.09002 * 109.50642 * 61.58027 * 9 8 7 38 38 H 1.08998 * 109.46829 * 40.86723 * 11 10 9 39 39 H 1.08994 * 109.47184 * 280.86321 * 11 10 9 40 40 H 0.96999 * 119.99800 * 185.06256 * 16 15 13 41 41 H 1.08999 * 117.50125 * 215.00806 * 21 12 11 42 42 H 1.09005 * 117.49510 * 0.02562 * 21 12 11 43 43 H 1.09000 * 117.49465 * 359.97438 * 22 12 11 44 44 H 1.08992 * 117.49885 * 144.97008 * 22 12 11 45 45 H 1.09003 * 109.49083 * 60.64401 * 23 10 9 46 46 H 1.09002 * 109.49193 * 180.70940 * 23 10 9 47 47 H 1.09003 * 109.49165 * 296.78124 * 24 7 6 48 48 H 1.09001 * 109.48952 * 56.82504 * 24 7 6 49 49 H 1.08004 * 120.03454 * 179.72607 * 25 6 5 50 50 H 1.08000 * 119.96477 * 180.24773 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0713 1.1985 5 6 2.7230 3.3732 1.2021 6 6 2.9560 4.0292 0.0000 7 7 3.4215 5.3461 0.0000 8 6 3.5975 5.8424 -1.3720 9 6 4.1823 7.2561 -1.3291 10 7 3.2826 8.1327 -0.5664 11 6 3.7723 9.5177 -0.5664 12 6 2.6264 10.4637 -0.2019 13 6 2.0074 10.2426 1.1543 14 1 0.9390 10.1143 1.2459 15 6 2.8052 10.2042 2.2782 16 7 4.0887 10.4749 2.1831 17 14 2.0647 9.7600 3.9345 18 1 1.4771 8.3980 3.8650 19 1 3.1242 9.7901 4.9747 20 1 1.0036 10.7397 4.2811 21 6 2.7078 11.9028 -0.7151 22 6 1.7044 10.9253 -1.3323 23 6 3.1066 7.6364 0.8056 24 6 2.5215 6.2228 0.7622 25 6 2.7193 3.3745 -1.2021 26 6 2.2636 2.0708 -1.1985 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0813 1.5605 2.1328 33 1 2.9029 3.8805 2.1384 34 1 2.6321 5.8635 -1.8778 35 1 4.2772 5.1839 -1.9129 36 1 4.2868 7.6375 -2.3449 37 1 5.1600 7.2311 -0.8479 38 1 4.1500 9.7695 -1.5573 39 1 4.5741 9.6196 0.1648 40 1 4.6638 10.3767 2.9580 41 1 2.3138 12.6896 -0.0719 42 1 3.5776 12.1754 -1.3128 43 1 1.9146 10.5553 -2.3358 44 1 0.6503 11.0686 -1.0953 45 1 4.0720 7.6153 1.3114 46 1 2.4268 8.2949 1.3462 47 1 1.5441 6.2480 0.2803 48 1 2.4164 5.8414 1.7779 49 1 2.8952 3.8831 -2.1385 50 1 2.0832 1.5598 -2.1327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878149301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:43 Heat of formation + Delta-G solvation = 66.828989 kcal Electronic energy + Delta-G solvation = -26853.329327 eV Core-core repulsion = 23460.170764 eV Total energy + Delta-G solvation = -3393.158563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.17135 -38.30386 -36.73121 -34.72792 -32.86315 -32.30215 -31.31433 -30.02130 -28.98537 -26.62550 -25.78092 -23.87266 -23.70183 -22.68249 -21.60929 -21.06695 -20.56159 -19.14052 -19.00085 -17.26501 -16.08154 -15.65695 -15.41771 -14.79546 -14.74604 -14.41975 -14.24897 -14.01775 -13.92118 -13.74974 -13.45891 -13.29716 -13.22286 -12.92244 -12.64358 -12.41396 -11.89904 -11.78717 -11.51516 -11.38668 -11.11549 -11.09973 -11.01206 -10.84030 -10.72568 -10.70050 -10.46155 -10.21800 -10.18466 -10.02763 -9.38987 -9.29563 -8.90547 -8.85155 -8.54493 -8.04066 -7.53403 -7.26137 -6.10335 -4.08802 1.46849 1.49647 3.22932 3.30134 3.32270 3.74394 4.12686 4.30673 4.71808 4.75391 4.78377 5.03840 5.06444 5.10299 5.24053 5.26796 5.41844 5.46743 5.50566 5.52735 5.58480 5.66375 5.72046 5.75964 5.86908 5.89698 5.97504 6.03788 6.06626 6.08957 6.11824 6.26135 6.31107 6.41001 6.43891 6.45787 6.63487 6.69967 6.72847 6.80445 6.82235 6.95551 7.01634 7.17463 7.22743 7.38721 7.43084 7.49210 7.54935 7.82572 8.14282 8.19970 8.45087 8.84475 9.43219 10.93501 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.003551 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.298415 B = 7884.071947 C = 8786.474951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.122 4.122 4 C -0.093 4.093 5 C -0.142 4.142 6 C 0.122 3.878 7 N -0.492 5.492 8 C 0.060 3.940 9 C 0.052 3.948 10 N -0.522 5.522 11 C 0.096 3.904 12 C 0.063 3.937 13 C -0.478 4.478 14 H 0.060 0.940 15 C 0.071 3.929 16 N -0.875 5.875 17 Si 0.876 3.124 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.193 4.193 22 C -0.200 4.200 23 C 0.041 3.959 24 C 0.061 3.939 25 C -0.173 4.173 26 C -0.092 4.092 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.033 0.967 39 H 0.071 0.929 40 H 0.262 0.738 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.028 0.972 46 H 0.142 0.858 47 H 0.048 0.952 48 H 0.073 0.927 49 H 0.125 0.875 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 -16.247 -4.967 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.123 4.123 4 C -0.111 4.111 5 C -0.162 4.162 6 C 0.023 3.977 7 N -0.207 5.207 8 C -0.067 4.067 9 C -0.077 4.077 10 N -0.247 5.247 11 C -0.031 4.031 12 C 0.062 3.938 13 C -0.516 4.516 14 H 0.079 0.921 15 C -0.132 4.132 16 N -0.511 5.511 17 Si 0.703 3.297 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.232 4.232 22 C -0.237 4.237 23 C -0.087 4.087 24 C -0.064 4.064 25 C -0.194 4.194 26 C -0.110 4.110 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.046 0.954 46 H 0.159 0.841 47 H 0.066 0.934 48 H 0.092 0.908 49 H 0.143 0.857 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.948 -16.054 -4.824 16.876 hybrid contribution -0.023 -0.182 0.877 0.896 sum -1.971 -16.236 -3.948 16.825 Atomic orbital electron populations 1.21761 0.95116 1.01275 1.02260 1.20444 0.95885 0.92953 1.02288 1.19717 1.02931 0.96453 0.93191 1.20821 0.98757 0.94231 0.97315 1.20805 1.03264 0.95086 0.97043 1.19120 0.93925 0.91148 0.93520 1.59298 1.45783 1.00222 1.15366 1.22292 1.00432 0.96039 0.87981 1.22153 0.94900 0.91854 0.98802 1.62038 1.46324 1.02264 1.14063 1.21583 0.97836 0.85829 0.97896 1.18754 0.93535 0.89756 0.91750 1.20436 0.93444 1.48379 0.89327 0.92138 1.24947 0.95116 0.94885 0.98290 1.69934 1.04097 1.46525 1.30593 0.86920 0.79189 0.79509 0.84115 1.19688 1.21057 1.20019 1.22851 0.99688 0.96377 1.04238 1.22779 0.95891 1.07292 0.97739 1.22968 1.01958 0.93108 0.90621 1.22505 0.93711 0.93219 0.96931 1.21301 1.04311 0.96306 0.97465 1.20804 0.98699 0.94294 0.97223 0.92767 0.92597 0.92635 0.91503 0.91466 0.86373 0.85892 0.93082 0.90718 0.91097 0.95029 0.94895 0.91093 0.92799 0.90540 0.92048 0.91606 0.90997 0.95353 0.84104 0.93390 0.90826 0.85676 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.08 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.12 -1.40 5.14 -104.58 -0.54 -1.94 16 4 C -0.09 -1.13 9.69 -39.62 -0.38 -1.52 16 5 C -0.14 -2.01 9.19 -39.38 -0.36 -2.37 16 6 C 0.12 1.85 5.64 -83.78 -0.47 1.38 16 7 N -0.49 -8.24 4.76 -170.95 -0.81 -9.05 16 8 C 0.06 0.93 4.29 -3.77 -0.02 0.91 16 9 C 0.05 0.91 5.57 -3.77 -0.02 0.89 16 10 N -0.52 -10.79 4.64 -234.46 -1.09 -11.88 16 11 C 0.10 2.16 4.77 -3.82 -0.02 2.14 16 12 C 0.06 1.50 1.77 -155.66 -0.28 1.22 16 13 C -0.48 -12.22 6.53 -34.43 -0.22 -12.44 16 14 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 15 C 0.07 1.79 3.66 -17.82 -0.07 1.73 16 16 N -0.87 -23.13 11.48 55.43 0.64 -22.50 16 17 Si 0.88 19.84 29.03 -169.99 -4.94 14.90 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 C -0.19 -4.38 9.95 -26.69 -0.27 -4.65 16 22 C -0.20 -4.34 9.95 -26.69 -0.27 -4.60 16 23 C 0.04 0.86 4.75 -3.77 -0.02 0.85 16 24 C 0.06 1.12 5.38 -3.77 -0.02 1.10 16 25 C -0.17 -2.33 8.82 -39.38 -0.35 -2.68 16 26 C -0.09 -1.09 9.69 -39.61 -0.38 -1.47 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.12 1.72 7.19 -52.49 -0.38 1.34 16 34 H 0.05 0.80 7.57 -51.93 -0.39 0.41 16 35 H 0.07 1.02 7.18 -51.92 -0.37 0.64 16 36 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.70 7.82 -51.93 -0.41 0.29 16 39 H 0.07 1.79 6.19 -51.93 -0.32 1.47 16 40 H 0.26 6.74 8.32 -40.82 -0.34 6.41 16 41 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.14 3.34 3.23 -51.93 -0.17 3.17 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.07 1.28 6.82 -51.93 -0.35 0.92 16 49 H 0.13 1.55 5.81 -52.48 -0.31 1.25 16 50 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -26.26 381.61 -12.50 -38.76 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.57 Total: 7.16 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -3.48 Total: -23.15 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -1.27 Total: -43.43 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.94 Total: 14.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -26.26 -12.50 -38.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878149301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.592 kcal (2) G-P(sol) polarization free energy of solvation -26.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds