Wall clock time and date at job start Tue Mar 31 2020 11:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.46764 * 2 1 4 4 C 1.38288 * 119.92591 * 90.00387 * 3 2 1 5 5 C 1.38096 * 120.07631 * 179.97438 * 4 3 2 6 6 C 1.38920 * 119.92523 * 359.97438 * 5 4 3 7 7 N 1.39674 * 120.07492 * 179.97438 * 6 5 4 8 8 C 1.46955 * 110.99844 * 180.02562 * 7 6 5 9 9 C 1.53051 * 109.36481 * 183.18754 * 8 7 6 10 10 N 1.46952 * 109.36256 * 301.59677 * 9 8 7 11 11 C 1.46903 * 110.99696 * 183.18475 * 10 9 8 12 12 C 1.53003 * 109.47021 * 160.86208 * 11 10 9 13 13 C 1.50707 * 115.54649 * 60.49312 * 12 11 10 14 14 H 1.07996 * 119.99924 * 232.83183 * 13 12 11 15 15 C 1.37883 * 119.99857 * 52.83772 * 13 12 11 16 16 N 1.31520 * 119.99743 * 5.88242 * 15 13 12 17 17 Si 1.86791 * 119.99997 * 186.16073 * 15 13 12 18 18 H 1.48503 * 109.47579 * 59.99697 * 17 15 13 19 19 H 1.48501 * 109.47389 * 180.02562 * 17 15 13 20 20 H 1.48511 * 109.47161 * 299.99763 * 17 15 13 21 21 C 1.52998 * 117.50177 * 206.16370 * 12 11 10 22 22 C 1.53000 * 117.50282 * 274.82567 * 12 11 10 23 23 C 1.46955 * 110.87958 * 59.32192 * 10 9 8 24 24 C 1.46952 * 110.99858 * 303.79804 * 7 6 5 25 25 C 1.38912 * 119.84678 * 0.25464 * 6 5 4 26 26 C 1.38105 * 119.92602 * 359.49158 * 25 6 5 27 27 H 1.09000 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46986 * 300.00411 * 1 2 3 29 29 H 1.09007 * 109.47210 * 59.99713 * 1 2 3 30 30 H 1.08998 * 109.47218 * 240.00032 * 2 1 3 31 31 H 1.08998 * 109.46999 * 119.99708 * 2 1 3 32 32 H 1.08007 * 119.95915 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.04258 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.49083 * 63.22027 * 8 7 6 35 35 H 1.09010 * 109.50604 * 303.16876 * 8 7 6 36 36 H 1.09004 * 109.48919 * 181.62683 * 9 8 7 37 37 H 1.09002 * 109.50642 * 61.58027 * 9 8 7 38 38 H 1.08998 * 109.46829 * 40.86723 * 11 10 9 39 39 H 1.08994 * 109.47184 * 280.86321 * 11 10 9 40 40 H 0.96999 * 119.99800 * 185.06256 * 16 15 13 41 41 H 1.08999 * 117.50125 * 215.00806 * 21 12 11 42 42 H 1.09005 * 117.49510 * 0.02562 * 21 12 11 43 43 H 1.09000 * 117.49465 * 359.97438 * 22 12 11 44 44 H 1.08992 * 117.49885 * 144.97008 * 22 12 11 45 45 H 1.09003 * 109.49083 * 60.64401 * 23 10 9 46 46 H 1.09002 * 109.49193 * 180.70940 * 23 10 9 47 47 H 1.09003 * 109.49165 * 296.78124 * 24 7 6 48 48 H 1.09001 * 109.48952 * 56.82504 * 24 7 6 49 49 H 1.08004 * 120.03454 * 179.72607 * 25 6 5 50 50 H 1.08000 * 119.96477 * 180.24773 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0713 1.1985 5 6 2.7230 3.3732 1.2021 6 6 2.9560 4.0292 0.0000 7 7 3.4215 5.3461 0.0000 8 6 3.5975 5.8424 -1.3720 9 6 4.1823 7.2561 -1.3291 10 7 3.2826 8.1327 -0.5664 11 6 3.7723 9.5177 -0.5664 12 6 2.6264 10.4637 -0.2019 13 6 2.0074 10.2426 1.1543 14 1 0.9390 10.1143 1.2459 15 6 2.8052 10.2042 2.2782 16 7 4.0887 10.4749 2.1831 17 14 2.0647 9.7600 3.9345 18 1 1.4771 8.3980 3.8650 19 1 3.1242 9.7901 4.9747 20 1 1.0036 10.7397 4.2811 21 6 2.7078 11.9028 -0.7151 22 6 1.7044 10.9253 -1.3323 23 6 3.1066 7.6364 0.8056 24 6 2.5215 6.2228 0.7622 25 6 2.7193 3.3745 -1.2021 26 6 2.2636 2.0708 -1.1985 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0813 1.5605 2.1328 33 1 2.9029 3.8805 2.1384 34 1 2.6321 5.8635 -1.8778 35 1 4.2772 5.1839 -1.9129 36 1 4.2868 7.6375 -2.3449 37 1 5.1600 7.2311 -0.8479 38 1 4.1500 9.7695 -1.5573 39 1 4.5741 9.6196 0.1648 40 1 4.6638 10.3767 2.9580 41 1 2.3138 12.6896 -0.0719 42 1 3.5776 12.1754 -1.3128 43 1 1.9146 10.5553 -2.3358 44 1 0.6503 11.0686 -1.0953 45 1 4.0720 7.6153 1.3114 46 1 2.4268 8.2949 1.3462 47 1 1.5441 6.2480 0.2803 48 1 2.4164 5.8414 1.7779 49 1 2.8952 3.8831 -2.1385 50 1 2.0832 1.5598 -2.1327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878149301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:42 Heat of formation + Delta-G solvation = 54.416337 kcal Electronic energy + Delta-G solvation = -26853.867580 eV Core-core repulsion = 23460.170764 eV Total energy + Delta-G solvation = -3393.696816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34486 -39.66124 -38.25993 -36.08010 -34.25236 -33.85532 -32.49921 -31.29572 -30.15253 -27.96860 -27.66662 -25.18337 -25.00690 -23.74915 -22.85044 -22.78418 -21.63096 -20.87117 -20.51175 -18.48395 -17.92144 -16.77750 -16.62313 -16.41468 -16.14049 -15.81300 -15.73109 -15.51304 -15.11347 -14.87680 -14.75473 -14.55496 -14.30129 -14.15605 -13.99996 -13.52610 -13.46477 -13.16058 -12.94223 -12.74225 -12.68970 -12.52003 -12.28336 -12.20575 -12.18216 -11.98231 -11.81509 -11.77559 -11.65792 -11.50890 -11.17517 -10.79488 -10.53326 -10.34502 -9.90946 -9.83146 -8.97540 -8.65602 -8.06807 -6.09160 0.45794 0.51154 1.39590 1.42987 1.47689 2.40809 2.66070 2.99642 3.04089 3.24064 3.75637 3.85055 3.96839 3.97700 4.10876 4.12176 4.20515 4.28981 4.39652 4.43341 4.47318 4.53272 4.58994 4.60654 4.65125 4.65886 4.73049 4.76142 4.86306 4.89193 4.92149 4.98775 5.04414 5.08238 5.12324 5.13909 5.18895 5.23306 5.35791 5.39474 5.41138 5.48488 5.57806 5.59024 5.64044 5.78116 5.86949 5.91474 6.07145 6.36475 6.46146 6.46950 6.58607 6.87530 7.44725 8.95351 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.003551 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.298415 B = 7884.071947 C = 8786.474951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.117 4.117 4 C -0.098 4.098 5 C -0.156 4.156 6 C 0.094 3.906 7 N -0.502 5.502 8 C 0.067 3.933 9 C 0.051 3.949 10 N -0.524 5.524 11 C 0.106 3.894 12 C 0.036 3.964 13 C -0.487 4.487 14 H 0.049 0.951 15 C 0.042 3.958 16 N -0.898 5.898 17 Si 0.919 3.081 18 H -0.263 1.263 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.195 4.195 22 C -0.179 4.179 23 C 0.051 3.949 24 C 0.073 3.927 25 C -0.176 4.176 26 C -0.094 4.094 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.018 0.982 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.258 0.742 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.000 1.000 46 H 0.117 0.883 47 H 0.041 0.959 48 H 0.076 0.924 49 H 0.135 0.865 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 -18.813 -6.324 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.118 4.118 4 C -0.116 4.116 5 C -0.177 4.177 6 C -0.003 4.003 7 N -0.218 5.218 8 C -0.060 4.060 9 C -0.077 4.077 10 N -0.248 5.248 11 C -0.022 4.022 12 C 0.035 3.965 13 C -0.525 4.525 14 H 0.068 0.932 15 C -0.159 4.159 16 N -0.535 5.535 17 Si 0.745 3.255 18 H -0.187 1.187 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.234 4.234 22 C -0.216 4.216 23 C -0.077 4.077 24 C -0.052 4.052 25 C -0.197 4.197 26 C -0.113 4.113 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.155 0.845 33 H 0.133 0.867 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.018 0.982 46 H 0.135 0.865 47 H 0.060 0.940 48 H 0.094 0.906 49 H 0.153 0.847 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.778 -18.641 -6.192 19.838 hybrid contribution 0.200 0.536 1.267 1.390 sum -2.578 -18.105 -4.925 18.939 Atomic orbital electron populations 1.21749 0.94607 1.02247 1.01683 1.20511 0.96182 0.91203 1.03540 1.20109 1.01267 0.97686 0.92708 1.21080 0.98225 0.93573 0.98726 1.20913 1.04023 0.96092 0.96629 1.19219 0.96047 0.90426 0.94658 1.59281 1.45855 1.00841 1.15784 1.22279 1.00912 0.95017 0.87810 1.22266 0.93747 0.92692 0.99007 1.62041 1.47100 1.01926 1.13770 1.21369 0.96432 0.86954 0.97406 1.18890 0.94918 0.90716 0.91963 1.20557 0.92959 1.48352 0.90607 0.93246 1.25378 0.95223 0.94746 1.00532 1.70041 1.04958 1.47565 1.30948 0.86222 0.78471 0.79669 0.81149 1.18724 1.21249 1.19954 1.22823 1.00585 0.95618 1.04372 1.22767 0.95453 1.05568 0.97848 1.22679 0.99816 0.94551 0.90626 1.22247 0.93437 0.91978 0.97572 1.21473 1.04044 0.97030 0.97118 1.21136 0.97822 0.93788 0.98545 0.91078 0.93359 0.93051 0.90092 0.90461 0.84517 0.86686 0.92868 0.88292 0.89087 0.96387 0.93619 0.94310 0.93224 0.91806 0.90865 0.89681 0.90973 0.98216 0.86530 0.94025 0.90600 0.84707 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.89 71.98 0.71 -1.24 16 2 C -0.08 -1.09 6.06 29.85 0.18 -0.91 16 3 C -0.12 -2.36 5.14 -19.84 -0.10 -2.46 16 4 C -0.10 -2.21 9.69 22.25 0.22 -2.00 16 5 C -0.16 -4.34 9.19 22.40 0.21 -4.13 16 6 C 0.09 2.77 5.64 38.22 0.22 2.99 16 7 N -0.50 -16.63 4.76 -694.76 -3.30 -19.94 16 8 C 0.07 1.98 4.29 86.31 0.37 2.35 16 9 C 0.05 1.76 5.57 86.31 0.48 2.24 16 10 N -0.52 -21.76 4.64 -895.70 -4.16 -25.91 16 11 C 0.11 4.84 4.77 86.30 0.41 5.25 16 12 C 0.04 1.72 1.77 -52.93 -0.09 1.63 16 13 C -0.49 -25.39 6.53 25.60 0.17 -25.23 16 14 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 15 C 0.04 2.19 3.66 84.66 0.31 2.50 16 16 N -0.90 -48.97 11.48 21.45 0.25 -48.72 16 17 Si 0.92 41.47 29.03 68.60 1.99 43.46 16 18 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 C -0.20 -8.83 9.95 30.62 0.30 -8.53 16 22 C -0.18 -7.59 9.95 30.62 0.30 -7.28 16 23 C 0.05 2.23 4.75 86.31 0.41 2.64 16 24 C 0.07 2.71 5.38 86.31 0.46 3.18 16 25 C -0.18 -4.37 8.82 22.40 0.20 -4.17 16 26 C -0.09 -1.97 9.69 22.25 0.22 -1.75 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 31 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 32 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.12 3.27 7.19 -2.91 -0.02 3.25 16 34 H 0.05 1.57 7.57 -2.39 -0.02 1.55 16 35 H 0.10 2.47 7.18 -2.38 -0.02 2.45 16 36 H 0.09 2.73 8.00 -2.38 -0.02 2.71 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 1.92 7.82 -2.39 -0.02 1.90 16 39 H 0.04 2.03 6.19 -2.39 -0.01 2.01 16 40 H 0.26 13.77 8.32 -92.71 -0.77 13.00 16 41 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 43 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 44 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 45 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.12 5.70 3.23 -2.39 -0.01 5.69 16 47 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.08 2.71 6.82 -2.39 -0.02 2.69 16 49 H 0.14 2.99 5.81 -2.91 -0.02 2.98 16 50 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -57.20 381.61 0.64 -56.56 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.90 Total: 29.50 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 4.97 Total: -34.94 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -7.22 Total: -94.58 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.99 Total: 43.46 kcal Total: -57.20 0.64 -56.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878149301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.978 kcal (2) G-P(sol) polarization free energy of solvation -57.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds