Wall clock time and date at job start Tue Mar 31 2020 11:42:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50708 * 109.46764 * 2 1
4 4 C 1.38288 * 119.92591 * 90.00387 * 3 2 1
5 5 C 1.38096 * 120.07631 * 179.97438 * 4 3 2
6 6 C 1.38920 * 119.92523 * 359.97438 * 5 4 3
7 7 N 1.39674 * 120.07492 * 179.97438 * 6 5 4
8 8 C 1.46955 * 110.99844 * 180.02562 * 7 6 5
9 9 C 1.53051 * 109.36481 * 183.18754 * 8 7 6
10 10 N 1.46952 * 109.36256 * 301.59677 * 9 8 7
11 11 C 1.46903 * 110.99696 * 183.18475 * 10 9 8
12 12 C 1.53003 * 109.47021 * 160.86208 * 11 10 9
13 13 C 1.50707 * 115.54649 * 60.49312 * 12 11 10
14 14 H 1.07996 * 119.99924 * 232.83183 * 13 12 11
15 15 C 1.37883 * 119.99857 * 52.83772 * 13 12 11
16 16 N 1.31520 * 119.99743 * 5.88242 * 15 13 12
17 17 Si 1.86791 * 119.99997 * 186.16073 * 15 13 12
18 18 H 1.48503 * 109.47579 * 59.99697 * 17 15 13
19 19 H 1.48501 * 109.47389 * 180.02562 * 17 15 13
20 20 H 1.48511 * 109.47161 * 299.99763 * 17 15 13
21 21 C 1.52998 * 117.50177 * 206.16370 * 12 11 10
22 22 C 1.53000 * 117.50282 * 274.82567 * 12 11 10
23 23 C 1.46955 * 110.87958 * 59.32192 * 10 9 8
24 24 C 1.46952 * 110.99858 * 303.79804 * 7 6 5
25 25 C 1.38912 * 119.84678 * 0.25464 * 6 5 4
26 26 C 1.38105 * 119.92602 * 359.49158 * 25 6 5
27 27 H 1.09000 * 109.47142 * 180.02562 * 1 2 3
28 28 H 1.09002 * 109.46986 * 300.00411 * 1 2 3
29 29 H 1.09007 * 109.47210 * 59.99713 * 1 2 3
30 30 H 1.08998 * 109.47218 * 240.00032 * 2 1 3
31 31 H 1.08998 * 109.46999 * 119.99708 * 2 1 3
32 32 H 1.08007 * 119.95915 * 359.97438 * 4 3 2
33 33 H 1.07999 * 120.04258 * 180.02562 * 5 4 3
34 34 H 1.09003 * 109.49083 * 63.22027 * 8 7 6
35 35 H 1.09010 * 109.50604 * 303.16876 * 8 7 6
36 36 H 1.09004 * 109.48919 * 181.62683 * 9 8 7
37 37 H 1.09002 * 109.50642 * 61.58027 * 9 8 7
38 38 H 1.08998 * 109.46829 * 40.86723 * 11 10 9
39 39 H 1.08994 * 109.47184 * 280.86321 * 11 10 9
40 40 H 0.96999 * 119.99800 * 185.06256 * 16 15 13
41 41 H 1.08999 * 117.50125 * 215.00806 * 21 12 11
42 42 H 1.09005 * 117.49510 * 0.02562 * 21 12 11
43 43 H 1.09000 * 117.49465 * 359.97438 * 22 12 11
44 44 H 1.08992 * 117.49885 * 144.97008 * 22 12 11
45 45 H 1.09003 * 109.49083 * 60.64401 * 23 10 9
46 46 H 1.09002 * 109.49193 * 180.70940 * 23 10 9
47 47 H 1.09003 * 109.49165 * 296.78124 * 24 7 6
48 48 H 1.09001 * 109.48952 * 56.82504 * 24 7 6
49 49 H 1.08004 * 120.03454 * 179.72607 * 25 6 5
50 50 H 1.08000 * 119.96477 * 180.24773 * 26 25 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 6 2.2623 2.0713 1.1985
5 6 2.7230 3.3732 1.2021
6 6 2.9560 4.0292 0.0000
7 7 3.4215 5.3461 0.0000
8 6 3.5975 5.8424 -1.3720
9 6 4.1823 7.2561 -1.3291
10 7 3.2826 8.1327 -0.5664
11 6 3.7723 9.5177 -0.5664
12 6 2.6264 10.4637 -0.2019
13 6 2.0074 10.2426 1.1543
14 1 0.9390 10.1143 1.2459
15 6 2.8052 10.2042 2.2782
16 7 4.0887 10.4749 2.1831
17 14 2.0647 9.7600 3.9345
18 1 1.4771 8.3980 3.8650
19 1 3.1242 9.7901 4.9747
20 1 1.0036 10.7397 4.2811
21 6 2.7078 11.9028 -0.7151
22 6 1.7044 10.9253 -1.3323
23 6 3.1066 7.6364 0.8056
24 6 2.5215 6.2228 0.7622
25 6 2.7193 3.3745 -1.2021
26 6 2.2636 2.0708 -1.1985
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5139 0.8900
29 1 -0.3634 0.5139 -0.8900
30 1 1.8934 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 2.0813 1.5605 2.1328
33 1 2.9029 3.8805 2.1384
34 1 2.6321 5.8635 -1.8778
35 1 4.2772 5.1839 -1.9129
36 1 4.2868 7.6375 -2.3449
37 1 5.1600 7.2311 -0.8479
38 1 4.1500 9.7695 -1.5573
39 1 4.5741 9.6196 0.1648
40 1 4.6638 10.3767 2.9580
41 1 2.3138 12.6896 -0.0719
42 1 3.5776 12.1754 -1.3128
43 1 1.9146 10.5553 -2.3358
44 1 0.6503 11.0686 -1.0953
45 1 4.0720 7.6153 1.3114
46 1 2.4268 8.2949 1.3462
47 1 1.5441 6.2480 0.2803
48 1 2.4164 5.8414 1.7779
49 1 2.8952 3.8831 -2.1385
50 1 2.0832 1.5598 -2.1327
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000878149301.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:42:42
Heat of formation + Delta-G solvation = 54.416337 kcal
Electronic energy + Delta-G solvation = -26853.867580 eV
Core-core repulsion = 23460.170764 eV
Total energy + Delta-G solvation = -3393.696816 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.205 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.34486 -39.66124 -38.25993 -36.08010 -34.25236 -33.85532 -32.49921 -31.29572
-30.15253 -27.96860 -27.66662 -25.18337 -25.00690 -23.74915 -22.85044 -22.78418
-21.63096 -20.87117 -20.51175 -18.48395 -17.92144 -16.77750 -16.62313 -16.41468
-16.14049 -15.81300 -15.73109 -15.51304 -15.11347 -14.87680 -14.75473 -14.55496
-14.30129 -14.15605 -13.99996 -13.52610 -13.46477 -13.16058 -12.94223 -12.74225
-12.68970 -12.52003 -12.28336 -12.20575 -12.18216 -11.98231 -11.81509 -11.77559
-11.65792 -11.50890 -11.17517 -10.79488 -10.53326 -10.34502 -9.90946 -9.83146
-8.97540 -8.65602 -8.06807 -6.09160 0.45794 0.51154 1.39590 1.42987
1.47689 2.40809 2.66070 2.99642 3.04089 3.24064 3.75637 3.85055
3.96839 3.97700 4.10876 4.12176 4.20515 4.28981 4.39652 4.43341
4.47318 4.53272 4.58994 4.60654 4.65125 4.65886 4.73049 4.76142
4.86306 4.89193 4.92149 4.98775 5.04414 5.08238 5.12324 5.13909
5.18895 5.23306 5.35791 5.39474 5.41138 5.48488 5.57806 5.59024
5.64044 5.78116 5.86949 5.91474 6.07145 6.36475 6.46146 6.46950
6.58607 6.87530 7.44725 8.95351
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.016973 B = 0.003551 C = 0.003186
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1649.298415 B = 7884.071947 C = 8786.474951
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.077 4.077
3 C -0.117 4.117
4 C -0.098 4.098
5 C -0.156 4.156
6 C 0.094 3.906
7 N -0.502 5.502
8 C 0.067 3.933
9 C 0.051 3.949
10 N -0.524 5.524
11 C 0.106 3.894
12 C 0.036 3.964
13 C -0.487 4.487
14 H 0.049 0.951
15 C 0.042 3.958
16 N -0.898 5.898
17 Si 0.919 3.081
18 H -0.263 1.263
19 H -0.287 1.287
20 H -0.274 1.274
21 C -0.195 4.195
22 C -0.179 4.179
23 C 0.051 3.949
24 C 0.073 3.927
25 C -0.176 4.176
26 C -0.094 4.094
27 H 0.070 0.930
28 H 0.047 0.953
29 H 0.050 0.950
30 H 0.080 0.920
31 H 0.077 0.923
32 H 0.137 0.863
33 H 0.115 0.885
34 H 0.053 0.947
35 H 0.099 0.901
36 H 0.091 0.909
37 H 0.018 0.982
38 H 0.045 0.955
39 H 0.039 0.961
40 H 0.258 0.742
41 H 0.063 0.937
42 H 0.073 0.927
43 H 0.085 0.915
44 H 0.072 0.928
45 H 0.000 1.000
46 H 0.117 0.883
47 H 0.041 0.959
48 H 0.076 0.924
49 H 0.135 0.865
50 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.964 -18.813 -6.324 20.068
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.114 4.114
3 C -0.118 4.118
4 C -0.116 4.116
5 C -0.177 4.177
6 C -0.003 4.003
7 N -0.218 5.218
8 C -0.060 4.060
9 C -0.077 4.077
10 N -0.248 5.248
11 C -0.022 4.022
12 C 0.035 3.965
13 C -0.525 4.525
14 H 0.068 0.932
15 C -0.159 4.159
16 N -0.535 5.535
17 Si 0.745 3.255
18 H -0.187 1.187
19 H -0.212 1.212
20 H -0.200 1.200
21 C -0.234 4.234
22 C -0.216 4.216
23 C -0.077 4.077
24 C -0.052 4.052
25 C -0.197 4.197
26 C -0.113 4.113
27 H 0.089 0.911
28 H 0.066 0.934
29 H 0.069 0.931
30 H 0.099 0.901
31 H 0.095 0.905
32 H 0.155 0.845
33 H 0.133 0.867
34 H 0.071 0.929
35 H 0.117 0.883
36 H 0.109 0.891
37 H 0.036 0.964
38 H 0.064 0.936
39 H 0.057 0.943
40 H 0.068 0.932
41 H 0.082 0.918
42 H 0.091 0.909
43 H 0.103 0.897
44 H 0.090 0.910
45 H 0.018 0.982
46 H 0.135 0.865
47 H 0.060 0.940
48 H 0.094 0.906
49 H 0.153 0.847
50 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -2.778 -18.641 -6.192 19.838
hybrid contribution 0.200 0.536 1.267 1.390
sum -2.578 -18.105 -4.925 18.939
Atomic orbital electron populations
1.21749 0.94607 1.02247 1.01683 1.20511 0.96182 0.91203 1.03540
1.20109 1.01267 0.97686 0.92708 1.21080 0.98225 0.93573 0.98726
1.20913 1.04023 0.96092 0.96629 1.19219 0.96047 0.90426 0.94658
1.59281 1.45855 1.00841 1.15784 1.22279 1.00912 0.95017 0.87810
1.22266 0.93747 0.92692 0.99007 1.62041 1.47100 1.01926 1.13770
1.21369 0.96432 0.86954 0.97406 1.18890 0.94918 0.90716 0.91963
1.20557 0.92959 1.48352 0.90607 0.93246 1.25378 0.95223 0.94746
1.00532 1.70041 1.04958 1.47565 1.30948 0.86222 0.78471 0.79669
0.81149 1.18724 1.21249 1.19954 1.22823 1.00585 0.95618 1.04372
1.22767 0.95453 1.05568 0.97848 1.22679 0.99816 0.94551 0.90626
1.22247 0.93437 0.91978 0.97572 1.21473 1.04044 0.97030 0.97118
1.21136 0.97822 0.93788 0.98545 0.91078 0.93359 0.93051 0.90092
0.90461 0.84517 0.86686 0.92868 0.88292 0.89087 0.96387 0.93619
0.94310 0.93224 0.91806 0.90865 0.89681 0.90973 0.98216 0.86530
0.94025 0.90600 0.84707 0.84042
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.96 9.89 71.98 0.71 -1.24 16
2 C -0.08 -1.09 6.06 29.85 0.18 -0.91 16
3 C -0.12 -2.36 5.14 -19.84 -0.10 -2.46 16
4 C -0.10 -2.21 9.69 22.25 0.22 -2.00 16
5 C -0.16 -4.34 9.19 22.40 0.21 -4.13 16
6 C 0.09 2.77 5.64 38.22 0.22 2.99 16
7 N -0.50 -16.63 4.76 -694.76 -3.30 -19.94 16
8 C 0.07 1.98 4.29 86.31 0.37 2.35 16
9 C 0.05 1.76 5.57 86.31 0.48 2.24 16
10 N -0.52 -21.76 4.64 -895.70 -4.16 -25.91 16
11 C 0.11 4.84 4.77 86.30 0.41 5.25 16
12 C 0.04 1.72 1.77 -52.93 -0.09 1.63 16
13 C -0.49 -25.39 6.53 25.60 0.17 -25.23 16
14 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16
15 C 0.04 2.19 3.66 84.66 0.31 2.50 16
16 N -0.90 -48.97 11.48 21.45 0.25 -48.72 16
17 Si 0.92 41.47 29.03 68.60 1.99 43.46 16
18 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16
19 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16
20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16
21 C -0.20 -8.83 9.95 30.62 0.30 -8.53 16
22 C -0.18 -7.59 9.95 30.62 0.30 -7.28 16
23 C 0.05 2.23 4.75 86.31 0.41 2.64 16
24 C 0.07 2.71 5.38 86.31 0.46 3.18 16
25 C -0.18 -4.37 8.82 22.40 0.20 -4.17 16
26 C -0.09 -1.97 9.69 22.25 0.22 -1.75 16
27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16
29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16
30 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16
31 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16
32 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16
33 H 0.12 3.27 7.19 -2.91 -0.02 3.25 16
34 H 0.05 1.57 7.57 -2.39 -0.02 1.55 16
35 H 0.10 2.47 7.18 -2.38 -0.02 2.45 16
36 H 0.09 2.73 8.00 -2.38 -0.02 2.71 16
37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16
38 H 0.05 1.92 7.82 -2.39 -0.02 1.90 16
39 H 0.04 2.03 6.19 -2.39 -0.01 2.01 16
40 H 0.26 13.77 8.32 -92.71 -0.77 13.00 16
41 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16
42 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16
43 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16
44 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16
45 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16
46 H 0.12 5.70 3.23 -2.39 -0.01 5.69 16
47 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16
48 H 0.08 2.71 6.82 -2.39 -0.02 2.69 16
49 H 0.14 2.99 5.81 -2.91 -0.02 2.98 16
50 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16
Total: -1.00 -57.20 381.61 0.64 -56.56
By element:
Atomic # 1 Polarization: 28.60 SS G_CDS: 0.90 Total: 29.50 kcal
Atomic # 6 Polarization: -39.91 SS G_CDS: 4.97 Total: -34.94 kcal
Atomic # 7 Polarization: -87.36 SS G_CDS: -7.22 Total: -94.58 kcal
Atomic # 14 Polarization: 41.47 SS G_CDS: 1.99 Total: 43.46 kcal
Total: -57.20 0.64 -56.56 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000878149301.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.978 kcal
(2) G-P(sol) polarization free energy of solvation -57.204 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.774 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.561 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.416 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds