Wall clock time and date at job start Tue Mar 31 2020 10:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00216 * 2 1 4 4 C 1.52997 * 109.47497 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47377 * 184.49601 * 4 3 2 6 6 N 1.46505 * 109.47130 * 64.49607 * 4 3 2 7 7 C 1.34769 * 120.00369 * 85.00189 * 6 4 3 8 8 O 1.21586 * 119.99835 * 359.97438 * 7 6 4 9 9 N 1.34770 * 120.00335 * 180.02562 * 7 6 4 10 10 C 1.46502 * 120.00252 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47252 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47475 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47336 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99951 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99898 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00275 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00041 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47143 * 89.99713 * 17 15 13 19 19 H 1.48499 * 109.47290 * 210.00052 * 17 15 13 20 20 H 1.48503 * 109.46982 * 330.00295 * 17 15 13 21 21 C 1.53002 * 109.46937 * 304.49699 * 4 3 2 22 22 H 1.08995 * 109.52466 * 56.38510 * 21 4 3 23 23 C 1.53173 * 109.51927 * 296.25974 * 21 4 3 24 24 C 1.53181 * 109.03557 * 183.11565 * 23 21 4 25 25 C 1.53095 * 109.16514 * 56.97972 * 24 23 21 26 26 O 1.42903 * 109.41427 * 302.39718 * 25 24 23 27 27 C 1.42896 * 114.10208 * 61.15127 * 26 25 24 28 28 H 1.09005 * 109.46875 * 299.99796 * 1 2 3 29 29 H 1.08997 * 109.47085 * 59.99460 * 1 2 3 30 30 H 1.08998 * 109.47337 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47113 * 59.99932 * 3 2 1 32 32 H 1.09005 * 109.47236 * 300.00626 * 3 2 1 33 33 H 0.97002 * 119.99467 * 265.00610 * 6 4 3 34 34 H 0.97006 * 119.99920 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.46789 * 299.99766 * 10 9 7 36 36 H 1.08998 * 109.47383 * 59.99713 * 10 9 7 37 37 H 1.09006 * 109.46892 * 299.99908 * 11 10 9 38 38 H 1.09004 * 109.47626 * 59.99430 * 11 10 9 39 39 H 1.08999 * 109.46717 * 300.00053 * 12 11 10 40 40 H 1.08997 * 109.46563 * 59.99521 * 12 11 10 41 41 H 0.96991 * 120.00268 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.54900 * 302.98256 * 23 21 4 43 43 H 1.08999 * 109.54706 * 63.25294 * 23 21 4 44 44 H 1.09002 * 109.52572 * 176.88539 * 24 23 21 45 45 H 1.08997 * 109.52233 * 297.01077 * 24 23 21 46 46 H 1.09001 * 109.47409 * 62.37566 * 25 24 23 47 47 H 1.08992 * 109.48116 * 182.39892 * 25 24 23 48 48 H 1.08995 * 109.48339 * 178.86012 * 27 26 25 49 49 H 1.09004 * 109.47745 * 58.82541 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1773 0.0799 6 7 3.9749 0.5534 -1.2476 7 6 4.1629 1.3023 -2.3522 8 8 3.9674 2.5017 -2.3140 9 7 4.5665 0.7216 -3.4994 10 6 4.7715 1.5357 -4.7000 11 6 5.2258 0.6387 -5.8531 12 6 5.4392 1.4888 -7.1072 13 6 5.8874 0.6053 -8.2428 14 1 6.0084 -0.4564 -8.0856 15 6 6.1430 1.1523 -9.4823 16 7 5.9961 2.4452 -9.6735 17 14 6.6978 0.0571 -10.8902 18 1 5.5093 -0.4391 -11.6294 19 1 7.5642 0.8356 -11.8112 20 1 7.4609 -1.0962 -10.3490 21 6 3.9799 0.3297 1.1879 22 1 3.4869 -0.6413 1.1427 23 6 3.6032 1.0346 2.4946 24 6 4.1216 0.2081 3.6755 25 6 5.6342 0.0201 3.5319 26 8 5.9176 -0.6125 2.2822 27 6 5.4979 0.1370 1.1403 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 4.1304 -0.4035 -1.2781 34 1 4.7222 -0.2354 -3.5300 35 1 3.8370 2.0282 -4.9688 36 1 5.5351 2.2881 -4.5029 37 1 6.1605 0.1465 -5.5840 38 1 4.4626 -0.1141 -6.0505 39 1 4.5044 1.9806 -7.3761 40 1 6.2023 2.2417 -6.9101 41 1 6.1763 2.8300 -10.5454 42 1 4.0550 2.0263 2.5174 43 1 2.5190 1.1249 2.5609 44 1 3.9064 0.7302 4.6079 45 1 3.6315 -0.7654 3.6817 46 1 6.1262 0.9921 3.5671 47 1 6.0019 -0.6033 4.3468 48 1 5.7675 -0.4023 0.2323 49 1 5.9882 1.1105 1.1442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884123776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:36 Heat of formation + Delta-G solvation = -148.319727 kcal Electronic energy + Delta-G solvation = -26727.682660 eV Core-core repulsion = 22882.052535 eV Total energy + Delta-G solvation = -3845.630125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.51341 -39.36441 -38.08303 -35.92621 -35.10119 -33.67030 -33.24476 -31.75164 -30.79424 -29.13620 -26.78732 -26.25445 -25.46040 -24.03096 -23.17233 -21.74285 -20.73982 -20.51406 -20.17492 -18.10631 -16.99963 -16.70486 -16.47050 -16.35016 -15.98841 -15.72694 -15.54801 -15.14998 -14.94818 -14.61950 -14.36385 -14.29174 -13.97273 -13.86573 -13.29667 -13.10450 -12.77048 -12.54409 -12.26749 -12.07878 -11.80756 -11.73989 -11.64271 -11.53432 -11.26592 -11.05691 -10.89136 -10.70129 -10.61573 -10.57668 -10.11241 -9.88963 -9.83830 -9.78241 -9.42102 -9.17598 -9.10854 -8.58430 -8.35753 -6.00440 -4.03386 2.78168 3.31836 3.33914 3.38163 3.41144 3.53035 3.58670 4.23699 4.33101 4.41147 4.45677 4.51730 4.53517 4.77696 4.93754 4.94254 5.02103 5.09577 5.14999 5.19037 5.24706 5.28584 5.35305 5.38263 5.40588 5.45972 5.50789 5.61006 5.66527 5.73867 5.78880 5.83912 6.00595 6.20900 6.44810 6.55704 6.64882 6.82072 6.86346 6.89637 7.04594 7.11901 7.65503 7.78472 7.98648 8.17847 8.39719 8.77026 9.03370 9.60674 11.10872 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.002231 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.561109 B =12548.673774 C =13292.834367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.047 3.953 4 C 0.179 3.821 5 H 0.102 0.898 6 N -0.741 5.741 7 C 0.701 3.299 8 O -0.596 6.596 9 N -0.741 5.741 10 C 0.136 3.864 11 C -0.120 4.120 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.126 4.126 22 H 0.096 0.904 23 C -0.115 4.115 24 C -0.154 4.154 25 C 0.058 3.942 26 O -0.381 6.381 27 C 0.067 3.933 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.398 0.602 34 H 0.394 0.606 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 -5.427 29.093 30.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.031 4.031 4 C 0.072 3.928 5 H 0.119 0.881 6 N -0.397 5.397 7 C 0.401 3.599 8 O -0.475 6.475 9 N -0.395 5.395 10 C 0.013 3.987 11 C -0.158 4.158 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.146 4.146 22 H 0.114 0.886 23 C -0.153 4.153 24 C -0.191 4.191 25 C -0.019 4.019 26 O -0.300 6.300 27 C -0.010 4.010 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.232 0.768 34 H 0.227 0.773 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.068 0.932 47 H 0.110 0.890 48 H 0.113 0.887 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.352 -4.493 28.939 30.195 hybrid contribution -0.070 -0.870 -0.917 1.266 sum -7.422 -5.363 28.022 29.480 Atomic orbital electron populations 1.22716 0.81249 1.02587 0.99885 1.87847 1.19432 1.27626 1.95408 1.23059 0.94054 0.85077 1.00920 1.20778 0.91755 0.97824 0.82399 0.88062 1.45095 1.74094 1.11000 1.09533 1.16016 0.78147 0.85336 0.80368 1.90907 1.59009 1.13099 1.84491 1.45384 1.72452 1.11578 1.10046 1.21497 1.00985 0.93854 0.82413 1.21890 0.99953 0.98702 0.95295 1.19026 0.97370 0.94937 0.90038 1.21207 1.45472 0.94267 0.95030 0.92651 1.25034 0.95645 0.94993 0.98842 1.69964 1.49252 1.10711 1.23382 0.86582 0.78618 0.80514 0.82196 1.20679 1.21221 1.19894 1.22002 0.97354 1.01177 0.94040 0.88553 1.21617 1.01635 0.98751 0.93273 1.22168 0.97003 1.01321 0.98654 1.22593 0.94641 0.98048 0.86624 1.87957 1.81300 1.46822 1.13873 1.22620 0.92757 0.96694 0.88938 0.94342 0.94090 0.89737 0.92567 0.92286 0.76841 0.77256 0.92053 0.91984 0.92746 0.92787 0.96284 0.96254 0.92943 0.91546 0.91004 0.90819 0.90894 0.93192 0.88984 0.88650 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.79 9.72 -35.23 -0.34 -4.13 16 3 C 0.05 0.46 5.35 37.16 0.20 0.66 16 4 C 0.18 1.74 1.95 -67.93 -0.13 1.60 16 5 H 0.10 1.11 7.58 -51.93 -0.39 0.72 16 6 N -0.74 -8.07 4.32 -58.68 -0.25 -8.32 16 7 C 0.70 10.53 8.53 -86.93 -0.74 9.78 16 8 O -0.60 -11.32 16.01 5.29 0.08 -11.23 16 9 N -0.74 -10.79 5.56 -65.23 -0.36 -11.15 16 10 C 0.14 2.43 5.67 -4.04 -0.02 2.41 16 11 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 14 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.13 -1.00 1.88 -90.48 -0.17 -1.17 16 22 H 0.10 0.85 7.45 -51.93 -0.39 0.46 16 23 C -0.11 -0.76 4.95 -26.55 -0.13 -0.89 16 24 C -0.15 -0.93 6.14 -26.59 -0.16 -1.09 16 25 C 0.06 0.40 6.84 37.21 0.25 0.66 16 26 O -0.38 -3.69 10.76 -35.23 -0.38 -4.07 16 27 C 0.07 0.58 5.88 37.21 0.22 0.80 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.45 6.84 -51.93 -0.36 0.09 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 3.54 8.20 -40.82 -0.33 3.20 16 34 H 0.39 4.65 8.49 -40.82 -0.35 4.31 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.45 6.81 -51.93 -0.35 0.10 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.82 7.32 -51.93 -0.38 0.44 16 49 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 392.54 15.07 5.92 5.92 Total: -1.00 -33.52 392.54 -8.75 -42.27 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -8.86 Total: 1.72 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -0.27 Total: -1.35 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.12 Total: -45.69 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.64 Total: -19.43 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.52 -8.75 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884123776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.051 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds