Wall clock time and date at job start Tue Mar 31 2020 10:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00216 * 2 1 4 4 C 1.52997 * 109.47497 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47377 * 184.49601 * 4 3 2 6 6 N 1.46505 * 109.47130 * 64.49607 * 4 3 2 7 7 C 1.34769 * 120.00369 * 85.00189 * 6 4 3 8 8 O 1.21586 * 119.99835 * 359.97438 * 7 6 4 9 9 N 1.34770 * 120.00335 * 180.02562 * 7 6 4 10 10 C 1.46502 * 120.00252 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47252 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47475 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47336 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99951 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99898 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00275 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00041 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47143 * 89.99713 * 17 15 13 19 19 H 1.48499 * 109.47290 * 210.00052 * 17 15 13 20 20 H 1.48503 * 109.46982 * 330.00295 * 17 15 13 21 21 C 1.53002 * 109.46937 * 304.49699 * 4 3 2 22 22 H 1.08995 * 109.52466 * 56.38510 * 21 4 3 23 23 C 1.53173 * 109.51927 * 296.25974 * 21 4 3 24 24 C 1.53181 * 109.03557 * 183.11565 * 23 21 4 25 25 C 1.53095 * 109.16514 * 56.97972 * 24 23 21 26 26 O 1.42903 * 109.41427 * 302.39718 * 25 24 23 27 27 C 1.42896 * 114.10208 * 61.15127 * 26 25 24 28 28 H 1.09005 * 109.46875 * 299.99796 * 1 2 3 29 29 H 1.08997 * 109.47085 * 59.99460 * 1 2 3 30 30 H 1.08998 * 109.47337 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47113 * 59.99932 * 3 2 1 32 32 H 1.09005 * 109.47236 * 300.00626 * 3 2 1 33 33 H 0.97002 * 119.99467 * 265.00610 * 6 4 3 34 34 H 0.97006 * 119.99920 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.46789 * 299.99766 * 10 9 7 36 36 H 1.08998 * 109.47383 * 59.99713 * 10 9 7 37 37 H 1.09006 * 109.46892 * 299.99908 * 11 10 9 38 38 H 1.09004 * 109.47626 * 59.99430 * 11 10 9 39 39 H 1.08999 * 109.46717 * 300.00053 * 12 11 10 40 40 H 1.08997 * 109.46563 * 59.99521 * 12 11 10 41 41 H 0.96991 * 120.00268 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.54900 * 302.98256 * 23 21 4 43 43 H 1.08999 * 109.54706 * 63.25294 * 23 21 4 44 44 H 1.09002 * 109.52572 * 176.88539 * 24 23 21 45 45 H 1.08997 * 109.52233 * 297.01077 * 24 23 21 46 46 H 1.09001 * 109.47409 * 62.37566 * 25 24 23 47 47 H 1.08992 * 109.48116 * 182.39892 * 25 24 23 48 48 H 1.08995 * 109.48339 * 178.86012 * 27 26 25 49 49 H 1.09004 * 109.47745 * 58.82541 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1773 0.0799 6 7 3.9749 0.5534 -1.2476 7 6 4.1629 1.3023 -2.3522 8 8 3.9674 2.5017 -2.3140 9 7 4.5665 0.7216 -3.4994 10 6 4.7715 1.5357 -4.7000 11 6 5.2258 0.6387 -5.8531 12 6 5.4392 1.4888 -7.1072 13 6 5.8874 0.6053 -8.2428 14 1 6.0084 -0.4564 -8.0856 15 6 6.1430 1.1523 -9.4823 16 7 5.9961 2.4452 -9.6735 17 14 6.6978 0.0571 -10.8902 18 1 5.5093 -0.4391 -11.6294 19 1 7.5642 0.8356 -11.8112 20 1 7.4609 -1.0962 -10.3490 21 6 3.9799 0.3297 1.1879 22 1 3.4869 -0.6413 1.1427 23 6 3.6032 1.0346 2.4946 24 6 4.1216 0.2081 3.6755 25 6 5.6342 0.0201 3.5319 26 8 5.9176 -0.6125 2.2822 27 6 5.4979 0.1370 1.1403 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 4.1304 -0.4035 -1.2781 34 1 4.7222 -0.2354 -3.5300 35 1 3.8370 2.0282 -4.9688 36 1 5.5351 2.2881 -4.5029 37 1 6.1605 0.1465 -5.5840 38 1 4.4626 -0.1141 -6.0505 39 1 4.5044 1.9806 -7.3761 40 1 6.2023 2.2417 -6.9101 41 1 6.1763 2.8300 -10.5454 42 1 4.0550 2.0263 2.5174 43 1 2.5190 1.1249 2.5609 44 1 3.9064 0.7302 4.6079 45 1 3.6315 -0.7654 3.6817 46 1 6.1262 0.9921 3.5671 47 1 6.0019 -0.6033 4.3468 48 1 5.7675 -0.4023 0.2323 49 1 5.9882 1.1105 1.1442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884123776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:35 Heat of formation + Delta-G solvation = -172.325366 kcal Electronic energy + Delta-G solvation = -26728.723623 eV Core-core repulsion = 22882.052535 eV Total energy + Delta-G solvation = -3846.671088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.45645 -40.27558 -38.85447 -37.12960 -36.32625 -35.17994 -34.38698 -33.09902 -31.98088 -29.95442 -28.42698 -27.05523 -26.14983 -25.00139 -24.61515 -22.66394 -22.28413 -21.57515 -21.07259 -19.24882 -18.53847 -17.78158 -17.41256 -17.22454 -16.84469 -16.72519 -16.53278 -16.40229 -16.14073 -15.57973 -15.52668 -15.39555 -15.27006 -14.76225 -14.26429 -13.99540 -13.74775 -13.69988 -13.66477 -13.40797 -13.16230 -12.76608 -12.72354 -12.53689 -12.38553 -12.34598 -12.07395 -11.91462 -11.71605 -11.65981 -11.60398 -11.29794 -11.21923 -11.11661 -10.62655 -10.54657 -10.48309 -10.28368 -9.76548 -8.18805 -6.30160 1.42017 1.43462 1.54389 1.68178 2.14605 2.42481 2.83714 2.91711 3.14852 3.28779 3.59107 3.76523 3.84581 4.02315 4.15621 4.19506 4.24667 4.27347 4.29822 4.38729 4.48424 4.52245 4.54676 4.57531 4.58293 4.65879 4.74173 4.82325 4.85435 4.94523 4.97368 4.99449 5.05474 5.13186 5.18115 5.21922 5.40526 5.47868 5.51115 5.56216 5.72304 5.85241 6.00283 6.17810 6.23684 6.26348 6.87104 7.10901 7.39265 7.58736 8.93348 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.002231 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.561109 B =12548.673774 C =13292.834367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.052 3.948 4 C 0.178 3.822 5 H 0.089 0.911 6 N -0.723 5.723 7 C 0.700 3.300 8 O -0.638 6.638 9 N -0.731 5.731 10 C 0.151 3.849 11 C -0.100 4.100 12 C 0.024 3.976 13 C -0.540 4.540 14 H 0.066 0.934 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.260 1.260 21 C -0.111 4.111 22 H 0.093 0.907 23 C -0.115 4.115 24 C -0.148 4.148 25 C 0.049 3.951 26 O -0.401 6.401 27 C 0.066 3.934 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.031 0.969 33 H 0.410 0.590 34 H 0.411 0.589 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.066 0.934 39 H -0.008 1.008 40 H -0.007 1.007 41 H 0.263 0.737 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.104 0.896 48 H 0.093 0.907 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 -7.488 30.486 32.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.026 4.026 4 C 0.072 3.928 5 H 0.107 0.893 6 N -0.379 5.379 7 C 0.400 3.600 8 O -0.520 6.520 9 N -0.386 5.386 10 C 0.027 3.973 11 C -0.138 4.138 12 C -0.014 4.014 13 C -0.578 4.578 14 H 0.084 0.916 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.184 1.184 21 C -0.130 4.130 22 H 0.111 0.889 23 C -0.153 4.153 24 C -0.186 4.186 25 C -0.027 4.027 26 O -0.320 6.320 27 C -0.010 4.010 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.247 0.753 34 H 0.247 0.753 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.010 0.990 40 H 0.011 0.989 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.122 0.878 48 H 0.111 0.889 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.531 -6.621 30.378 31.990 hybrid contribution -0.047 -0.210 -1.274 1.292 sum -7.577 -6.831 29.104 30.840 Atomic orbital electron populations 1.22872 0.80096 1.03652 1.00308 1.87822 1.20719 1.27392 1.95468 1.22956 0.93786 0.85213 1.00626 1.20882 0.91977 0.97630 0.82301 0.89262 1.44958 1.72792 1.11389 1.08756 1.16125 0.77868 0.84953 0.81029 1.90883 1.60745 1.15132 1.85204 1.45045 1.72450 1.12110 1.09037 1.21051 0.99624 0.93476 0.83188 1.21587 1.01094 0.97993 0.93161 1.18940 0.95031 0.94907 0.92522 1.21678 1.45167 0.95055 0.95893 0.91564 1.26032 0.95698 0.96440 1.02023 1.70111 1.50426 1.12792 1.24219 0.85411 0.78355 0.78667 0.78383 1.19832 1.21030 1.18442 1.21857 0.96719 1.00619 0.93855 0.88916 1.21650 1.02169 0.98873 0.92626 1.22135 0.96074 1.01239 0.99122 1.22806 0.95537 0.98457 0.85877 1.87929 1.81656 1.47572 1.14822 1.22604 0.93131 0.96370 0.88942 0.92718 0.94883 0.88398 0.90414 0.95050 0.75348 0.75298 0.93660 0.93424 0.91369 0.91506 0.98979 0.98897 0.92821 0.91206 0.90275 0.88940 0.91207 0.92775 0.87756 0.88864 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.39 -7.20 9.72 -148.98 -1.45 -8.65 16 3 C 0.05 0.97 5.35 71.98 0.39 1.36 16 4 C 0.18 3.33 1.95 44.99 0.09 3.42 16 5 H 0.09 1.94 7.58 -2.39 -0.02 1.92 16 6 N -0.72 -15.20 4.32 -457.82 -1.98 -17.18 16 7 C 0.70 20.90 8.53 179.06 1.53 22.43 16 8 O -0.64 -24.70 16.01 -3.99 -0.06 -24.76 16 9 N -0.73 -20.80 5.56 -478.56 -2.66 -23.46 16 10 C 0.15 5.48 5.67 86.38 0.49 5.97 16 11 C -0.10 -3.92 5.27 30.59 0.16 -3.75 16 12 C 0.02 1.25 4.97 29.85 0.15 1.39 16 13 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 14 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 15 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 16 N -0.94 -57.49 13.29 21.45 0.28 -57.21 16 17 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 C -0.11 -1.61 1.88 -10.70 -0.02 -1.63 16 22 H 0.09 1.47 7.45 -2.39 -0.02 1.45 16 23 C -0.12 -1.30 4.95 30.71 0.15 -1.14 16 24 C -0.15 -1.44 6.14 30.69 0.19 -1.25 16 25 C 0.05 0.60 6.84 72.01 0.49 1.09 16 26 O -0.40 -7.26 10.76 -148.98 -1.60 -8.87 16 27 C 0.07 1.09 5.88 72.01 0.42 1.51 16 28 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.11 6.84 -2.39 -0.02 1.09 16 32 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.41 6.69 8.20 -92.71 -0.76 5.93 16 34 H 0.41 8.96 8.49 -92.70 -0.79 8.17 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 38 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 39 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.26 15.20 8.31 -92.72 -0.77 14.43 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 0.80 6.81 -2.39 -0.02 0.78 16 44 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 1.52 7.32 -2.39 -0.02 1.50 16 49 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -73.17 392.54 -0.08 -73.25 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.62 Total: 19.67 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.98 Total: 1.12 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -4.36 Total: -97.85 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -3.12 Total: -42.28 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -73.17 -0.08 -73.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884123776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.079 kcal (2) G-P(sol) polarization free energy of solvation -73.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds