Wall clock time and date at job start Tue Mar 31 2020 10:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00130 * 2 1 4 4 C 1.52999 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46907 * 175.47990 * 4 3 2 6 6 N 1.46500 * 109.47150 * 295.48334 * 4 3 2 7 7 C 1.34770 * 119.99769 * 274.99696 * 6 4 3 8 8 O 1.21591 * 120.00432 * 0.02562 * 7 6 4 9 9 N 1.34780 * 120.00140 * 180.02562 * 7 6 4 10 10 C 1.46499 * 120.00355 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47122 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47121 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47505 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99701 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00425 * 180.02562 * 13 12 11 16 16 N 1.31508 * 119.99488 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99902 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47545 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46811 * 120.00062 * 17 15 13 20 20 H 1.48495 * 109.47151 * 239.99939 * 17 15 13 21 21 C 1.53005 * 109.46777 * 55.48317 * 4 3 2 22 22 H 1.08997 * 109.57320 * 303.82277 * 21 4 3 23 23 C 1.53171 * 109.52524 * 63.98337 * 21 4 3 24 24 C 1.53178 * 109.04041 * 176.88427 * 23 21 4 25 25 C 1.53088 * 109.16018 * 303.02259 * 24 23 21 26 26 O 1.42909 * 109.41848 * 57.60475 * 25 24 23 27 27 C 1.42896 * 114.09757 * 298.84117 * 26 25 24 28 28 H 1.09000 * 109.46656 * 299.99684 * 1 2 3 29 29 H 1.08994 * 109.47208 * 59.99728 * 1 2 3 30 30 H 1.09001 * 109.46892 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47200 * 60.00234 * 3 2 1 32 32 H 1.09000 * 109.47252 * 300.00359 * 3 2 1 33 33 H 0.96996 * 120.00027 * 94.99706 * 6 4 3 34 34 H 0.97005 * 119.99583 * 359.97438 * 9 7 6 35 35 H 1.08990 * 109.47250 * 300.00144 * 10 9 7 36 36 H 1.09004 * 109.46876 * 60.00354 * 10 9 7 37 37 H 1.08990 * 109.47670 * 300.00493 * 11 10 9 38 38 H 1.09006 * 109.46702 * 60.00216 * 11 10 9 39 39 H 1.08999 * 109.47593 * 300.01084 * 12 11 10 40 40 H 1.09006 * 109.46953 * 60.00618 * 12 11 10 41 41 H 0.96999 * 120.00029 * 180.02562 * 16 15 13 42 42 H 1.08999 * 109.54445 * 296.75440 * 23 21 4 43 43 H 1.09005 * 109.54188 * 56.92690 * 23 21 4 44 44 H 1.09009 * 109.51699 * 62.92356 * 24 23 21 45 45 H 1.08994 * 109.52598 * 183.11343 * 24 23 21 46 46 H 1.09006 * 109.48058 * 177.58496 * 25 24 23 47 47 H 1.08993 * 109.48552 * 297.61015 * 25 24 23 48 48 H 1.08994 * 109.48098 * 301.17357 * 27 26 25 49 49 H 1.09000 * 109.47988 * 181.14031 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1772 -0.0816 6 7 3.9759 0.5535 1.2459 7 6 4.1648 1.3024 2.3503 8 8 3.9693 2.5019 2.3122 9 7 4.5705 0.7219 3.4970 10 6 4.7764 1.5361 4.6974 11 6 5.2318 0.6390 5.8501 12 6 5.4475 1.4894 7.1035 13 6 5.8966 0.6060 8.2389 14 1 6.0166 -0.4558 8.0819 15 6 6.1543 1.1533 9.4779 16 7 6.0076 2.4461 9.6691 17 14 6.7116 0.0582 10.8849 18 1 6.7990 -1.3473 10.4137 19 1 8.0459 0.5042 11.3605 20 1 5.7338 0.1474 11.9989 21 6 3.9788 0.3297 -1.1896 22 1 3.4834 -0.6402 -1.1468 23 6 3.6065 1.0374 -2.4960 24 6 4.1240 0.2106 -3.6772 25 6 5.6356 0.0174 -3.5314 26 8 5.9150 -0.6177 -2.2820 27 6 5.4961 0.1318 -1.1399 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 4.1315 -0.4035 1.2764 34 1 4.7261 -0.2351 3.5274 35 1 5.5392 2.2890 4.4992 36 1 3.8419 2.0279 4.9675 37 1 4.4688 -0.1136 6.0481 38 1 6.1662 0.1469 5.5802 39 1 6.2107 2.2419 6.9053 40 1 4.5133 1.9819 7.3736 41 1 6.1892 2.8312 10.5406 42 1 2.5227 1.1315 -2.5638 43 1 4.0605 2.0282 -2.5162 44 1 3.6314 -0.7618 -3.6846 45 1 3.9119 0.7345 -4.6092 46 1 6.0026 -0.6065 -4.3464 47 1 6.1310 0.9876 -3.5648 48 1 5.9896 1.1036 -1.1419 49 1 5.7626 -0.4095 -0.2321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884123777.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:38 Heat of formation + Delta-G solvation = -148.365381 kcal Electronic energy + Delta-G solvation = -26728.021408 eV Core-core repulsion = 22882.389303 eV Total energy + Delta-G solvation = -3845.632105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51346 -39.36360 -38.08293 -35.92669 -35.10130 -33.67067 -33.24579 -31.75185 -30.79482 -29.13759 -26.78758 -26.25528 -25.46025 -24.03093 -23.17352 -21.74224 -20.74023 -20.51481 -20.17663 -18.10723 -17.00001 -16.70479 -16.46985 -16.35212 -15.98860 -15.72721 -15.54844 -15.15034 -14.94740 -14.61958 -14.36229 -14.29119 -13.97298 -13.86659 -13.29721 -13.10518 -12.76954 -12.54505 -12.27623 -12.07966 -11.80440 -11.73978 -11.64259 -11.53410 -11.26573 -11.05747 -10.90931 -10.70540 -10.61596 -10.55201 -10.11305 -9.88996 -9.84207 -9.78229 -9.42468 -9.17622 -9.09520 -8.58437 -8.36250 -6.00727 -4.03528 2.78144 3.30852 3.33857 3.38335 3.42052 3.53059 3.58658 4.23685 4.33102 4.41021 4.45620 4.51741 4.53454 4.77710 4.93752 4.94296 5.02104 5.09592 5.14918 5.19031 5.24725 5.28585 5.35183 5.38256 5.40570 5.45944 5.50739 5.60993 5.66482 5.73835 5.78831 5.83911 6.00615 6.20892 6.44762 6.55700 6.64861 6.82075 6.86312 6.89626 7.04582 7.11874 7.65670 7.78348 7.98531 8.17799 8.39631 8.76983 9.03460 9.60587 11.10650 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019676 B = 0.002231 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.678430 B =12545.701235 C =13290.467042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.047 3.953 4 C 0.179 3.821 5 H 0.102 0.898 6 N -0.741 5.741 7 C 0.701 3.299 8 O -0.596 6.596 9 N -0.741 5.741 10 C 0.136 3.864 11 C -0.120 4.120 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.126 4.126 22 H 0.096 0.904 23 C -0.115 4.115 24 C -0.154 4.154 25 C 0.058 3.942 26 O -0.381 6.381 27 C 0.067 3.933 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.398 0.602 34 H 0.394 0.606 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.260 0.740 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.050 0.950 48 H 0.052 0.948 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.438 -5.440 -29.096 30.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.031 4.031 4 C 0.072 3.928 5 H 0.119 0.881 6 N -0.397 5.397 7 C 0.401 3.599 8 O -0.475 6.475 9 N -0.395 5.395 10 C 0.013 3.987 11 C -0.158 4.158 12 C -0.014 4.014 13 C -0.559 4.559 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.146 4.146 22 H 0.115 0.885 23 C -0.153 4.153 24 C -0.191 4.191 25 C -0.019 4.019 26 O -0.300 6.300 27 C -0.010 4.010 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.232 0.768 34 H 0.227 0.773 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.388 -4.512 -28.944 30.211 hybrid contribution -0.058 -0.855 0.920 1.257 sum -7.446 -5.367 -28.023 29.488 Atomic orbital electron populations 1.22715 0.81249 1.02588 0.99885 1.87847 1.19433 1.27625 1.95409 1.23060 0.94054 0.85077 1.00919 1.20777 0.91749 0.97823 0.82404 0.88061 1.45092 1.74062 1.11000 1.09564 1.16021 0.78146 0.85336 0.80367 1.90909 1.59029 1.13092 1.84476 1.45386 1.72393 1.11584 1.10100 1.21497 1.00981 0.93853 0.82419 1.21886 0.99952 0.98698 0.95297 1.19033 0.97375 0.94943 0.90063 1.21247 1.45309 0.94291 0.95053 0.92598 1.25036 0.95659 0.94999 0.98853 1.69975 1.49264 1.10715 1.23345 0.86527 0.78312 0.80775 0.82317 1.19761 1.21011 1.21023 1.22003 0.97378 1.01158 0.94037 0.88550 1.21616 1.01653 0.98734 0.93277 1.22166 0.97015 1.01305 0.98648 1.22595 0.94668 0.98021 0.86630 1.87959 1.81465 1.46647 1.13882 1.22620 0.92768 0.96696 0.88930 0.94098 0.94332 0.89737 0.92280 0.92574 0.76839 0.77256 0.91977 0.92062 0.92779 0.92751 0.96252 0.96276 0.93001 0.91018 0.91544 0.90890 0.90809 0.88986 0.93190 0.92980 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.79 9.72 -35.23 -0.34 -4.13 16 3 C 0.05 0.46 5.36 37.16 0.20 0.66 16 4 C 0.18 1.74 1.95 -67.93 -0.13 1.61 16 5 H 0.10 1.11 7.58 -51.93 -0.39 0.72 16 6 N -0.74 -8.07 4.32 -58.68 -0.25 -8.32 16 7 C 0.70 10.52 8.53 -86.92 -0.74 9.78 16 8 O -0.60 -11.32 16.01 5.29 0.08 -11.23 16 9 N -0.74 -10.79 5.56 -65.23 -0.36 -11.15 16 10 C 0.14 2.43 5.67 -4.04 -0.02 2.41 16 11 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 14 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 17 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C -0.13 -1.00 1.88 -90.48 -0.17 -1.17 16 22 H 0.10 0.85 7.45 -51.93 -0.39 0.47 16 23 C -0.11 -0.76 4.96 -26.55 -0.13 -0.89 16 24 C -0.15 -0.92 6.14 -26.59 -0.16 -1.09 16 25 C 0.06 0.40 6.84 37.20 0.25 0.66 16 26 O -0.38 -3.69 10.77 -35.23 -0.38 -4.07 16 27 C 0.07 0.58 5.88 37.21 0.22 0.80 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.45 6.84 -51.93 -0.36 0.09 16 33 H 0.40 3.54 8.18 -40.82 -0.33 3.20 16 34 H 0.39 4.65 8.49 -40.82 -0.35 4.31 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.07 0.45 6.81 -51.93 -0.35 0.10 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.10 0.82 7.30 -51.93 -0.38 0.44 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -33.55 392.52 -8.74 -42.29 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.85 Total: 1.69 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -0.27 Total: -1.35 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.12 Total: -45.68 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.64 Total: -19.43 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.55 -8.74 -42.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884123777.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.073 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds