Wall clock time and date at job start Tue Mar 31 2020 10:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00130 * 2 1 4 4 C 1.52999 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46907 * 175.47990 * 4 3 2 6 6 N 1.46500 * 109.47150 * 295.48334 * 4 3 2 7 7 C 1.34770 * 119.99769 * 274.99696 * 6 4 3 8 8 O 1.21591 * 120.00432 * 0.02562 * 7 6 4 9 9 N 1.34780 * 120.00140 * 180.02562 * 7 6 4 10 10 C 1.46499 * 120.00355 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47122 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47121 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47505 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99701 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00425 * 180.02562 * 13 12 11 16 16 N 1.31508 * 119.99488 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99902 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47545 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46811 * 120.00062 * 17 15 13 20 20 H 1.48495 * 109.47151 * 239.99939 * 17 15 13 21 21 C 1.53005 * 109.46777 * 55.48317 * 4 3 2 22 22 H 1.08997 * 109.57320 * 303.82277 * 21 4 3 23 23 C 1.53171 * 109.52524 * 63.98337 * 21 4 3 24 24 C 1.53178 * 109.04041 * 176.88427 * 23 21 4 25 25 C 1.53088 * 109.16018 * 303.02259 * 24 23 21 26 26 O 1.42909 * 109.41848 * 57.60475 * 25 24 23 27 27 C 1.42896 * 114.09757 * 298.84117 * 26 25 24 28 28 H 1.09000 * 109.46656 * 299.99684 * 1 2 3 29 29 H 1.08994 * 109.47208 * 59.99728 * 1 2 3 30 30 H 1.09001 * 109.46892 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47200 * 60.00234 * 3 2 1 32 32 H 1.09000 * 109.47252 * 300.00359 * 3 2 1 33 33 H 0.96996 * 120.00027 * 94.99706 * 6 4 3 34 34 H 0.97005 * 119.99583 * 359.97438 * 9 7 6 35 35 H 1.08990 * 109.47250 * 300.00144 * 10 9 7 36 36 H 1.09004 * 109.46876 * 60.00354 * 10 9 7 37 37 H 1.08990 * 109.47670 * 300.00493 * 11 10 9 38 38 H 1.09006 * 109.46702 * 60.00216 * 11 10 9 39 39 H 1.08999 * 109.47593 * 300.01084 * 12 11 10 40 40 H 1.09006 * 109.46953 * 60.00618 * 12 11 10 41 41 H 0.96999 * 120.00029 * 180.02562 * 16 15 13 42 42 H 1.08999 * 109.54445 * 296.75440 * 23 21 4 43 43 H 1.09005 * 109.54188 * 56.92690 * 23 21 4 44 44 H 1.09009 * 109.51699 * 62.92356 * 24 23 21 45 45 H 1.08994 * 109.52598 * 183.11343 * 24 23 21 46 46 H 1.09006 * 109.48058 * 177.58496 * 25 24 23 47 47 H 1.08993 * 109.48552 * 297.61015 * 25 24 23 48 48 H 1.08994 * 109.48098 * 301.17357 * 27 26 25 49 49 H 1.09000 * 109.47988 * 181.14031 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1772 -0.0816 6 7 3.9759 0.5535 1.2459 7 6 4.1648 1.3024 2.3503 8 8 3.9693 2.5019 2.3122 9 7 4.5705 0.7219 3.4970 10 6 4.7764 1.5361 4.6974 11 6 5.2318 0.6390 5.8501 12 6 5.4475 1.4894 7.1035 13 6 5.8966 0.6060 8.2389 14 1 6.0166 -0.4558 8.0819 15 6 6.1543 1.1533 9.4779 16 7 6.0076 2.4461 9.6691 17 14 6.7116 0.0582 10.8849 18 1 6.7990 -1.3473 10.4137 19 1 8.0459 0.5042 11.3605 20 1 5.7338 0.1474 11.9989 21 6 3.9788 0.3297 -1.1896 22 1 3.4834 -0.6402 -1.1468 23 6 3.6065 1.0374 -2.4960 24 6 4.1240 0.2106 -3.6772 25 6 5.6356 0.0174 -3.5314 26 8 5.9150 -0.6177 -2.2820 27 6 5.4961 0.1318 -1.1399 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 4.1315 -0.4035 1.2764 34 1 4.7261 -0.2351 3.5274 35 1 5.5392 2.2890 4.4992 36 1 3.8419 2.0279 4.9675 37 1 4.4688 -0.1136 6.0481 38 1 6.1662 0.1469 5.5802 39 1 6.2107 2.2419 6.9053 40 1 4.5133 1.9819 7.3736 41 1 6.1892 2.8312 10.5406 42 1 2.5227 1.1315 -2.5638 43 1 4.0605 2.0282 -2.5162 44 1 3.6314 -0.7618 -3.6846 45 1 3.9119 0.7345 -4.6092 46 1 6.0026 -0.6065 -4.3464 47 1 6.1310 0.9876 -3.5648 48 1 5.9896 1.1036 -1.1419 49 1 5.7626 -0.4095 -0.2321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884123777.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:38 Heat of formation + Delta-G solvation = -172.389020 kcal Electronic energy + Delta-G solvation = -26729.063151 eV Core-core repulsion = 22882.389303 eV Total energy + Delta-G solvation = -3846.673848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45615 -40.27471 -38.85431 -37.13008 -36.32637 -35.18090 -34.38715 -33.09965 -31.98054 -29.95564 -28.42768 -27.05566 -26.14975 -25.00227 -24.61530 -22.66331 -22.28469 -21.57523 -21.07369 -19.24956 -18.54183 -17.78224 -17.41235 -17.22413 -16.84454 -16.72486 -16.53194 -16.40090 -16.14130 -15.57875 -15.52578 -15.39560 -15.27126 -14.76322 -14.27360 -13.99587 -13.74338 -13.69895 -13.66524 -13.40815 -13.16357 -12.78313 -12.73456 -12.53822 -12.38029 -12.32098 -12.07358 -11.91462 -11.71672 -11.66493 -11.60659 -11.29292 -11.21602 -11.10984 -10.62662 -10.55541 -10.48292 -10.28352 -9.76540 -8.19090 -6.30280 1.42041 1.42161 1.55429 1.68190 2.14554 2.42349 2.83725 2.91745 3.14729 3.28781 3.59091 3.76480 3.84608 4.02235 4.15635 4.19478 4.24710 4.27371 4.29834 4.38730 4.48375 4.52319 4.54647 4.57566 4.58328 4.65858 4.74178 4.82320 4.85449 4.94514 4.97357 4.99455 5.05518 5.13137 5.18122 5.21882 5.40548 5.47970 5.51115 5.56291 5.72254 5.85248 6.00275 6.17806 6.23639 6.26317 6.87187 7.10878 7.39171 7.58716 8.93307 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019676 B = 0.002231 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.678430 B =12545.701235 C =13290.467042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.052 3.948 4 C 0.178 3.822 5 H 0.089 0.911 6 N -0.723 5.723 7 C 0.700 3.300 8 O -0.638 6.638 9 N -0.731 5.731 10 C 0.151 3.849 11 C -0.100 4.100 12 C 0.023 3.977 13 C -0.539 4.539 14 H 0.066 0.934 15 C -0.005 4.005 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.111 4.111 22 H 0.093 0.907 23 C -0.115 4.115 24 C -0.148 4.148 25 C 0.049 3.951 26 O -0.401 6.401 27 C 0.066 3.934 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.410 0.590 34 H 0.411 0.589 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.068 0.932 39 H -0.007 1.007 40 H -0.008 1.008 41 H 0.263 0.737 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.054 0.946 48 H 0.047 0.953 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 -7.491 -30.489 32.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.026 4.026 4 C 0.072 3.928 5 H 0.107 0.893 6 N -0.379 5.379 7 C 0.400 3.600 8 O -0.520 6.520 9 N -0.386 5.386 10 C 0.027 3.973 11 C -0.138 4.138 12 C -0.014 4.014 13 C -0.577 4.577 14 H 0.084 0.916 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.182 1.182 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.131 4.131 22 H 0.111 0.889 23 C -0.153 4.153 24 C -0.186 4.186 25 C -0.027 4.027 26 O -0.320 6.320 27 C -0.011 4.011 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.247 0.753 34 H 0.247 0.753 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.011 0.989 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.122 0.878 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.565 -6.628 -30.383 32.004 hybrid contribution -0.034 -0.197 1.278 1.294 sum -7.599 -6.825 -29.104 30.845 Atomic orbital electron populations 1.22871 0.80096 1.03651 1.00309 1.87823 1.20721 1.27391 1.95469 1.22956 0.93787 0.85213 1.00626 1.20881 0.91970 0.97629 0.82307 0.89260 1.44955 1.72761 1.11389 1.08786 1.16130 0.77867 0.84953 0.81028 1.90884 1.60764 1.15124 1.85189 1.45047 1.72391 1.12115 1.09092 1.21051 0.99621 0.93475 0.83192 1.21583 1.01092 0.97989 0.93168 1.18946 0.95041 0.94913 0.92535 1.21708 1.45011 0.95043 0.95917 0.91572 1.26032 0.95721 0.96446 1.02025 1.70118 1.50429 1.12790 1.24224 0.85359 0.77742 0.79229 0.78462 1.18227 1.20568 1.20583 1.21858 0.96740 1.00603 0.93851 0.88914 1.21649 1.02192 0.98851 0.92631 1.22133 0.96084 1.01225 0.99115 1.22807 0.95567 0.98427 0.85885 1.87931 1.81817 1.47400 1.14830 1.22604 0.93140 0.96371 0.88937 0.94889 0.92709 0.88400 0.95040 0.90423 0.75346 0.75299 0.93415 0.93668 0.91507 0.91367 0.98889 0.98968 0.92825 0.90284 0.91209 0.91201 0.88929 0.87758 0.92777 0.93430 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.39 -7.20 9.72 -148.98 -1.45 -8.65 16 3 C 0.05 0.97 5.36 71.98 0.39 1.36 16 4 C 0.18 3.33 1.95 44.99 0.09 3.42 16 5 H 0.09 1.94 7.58 -2.39 -0.02 1.93 16 6 N -0.72 -15.20 4.32 -457.81 -1.98 -17.17 16 7 C 0.70 20.90 8.53 179.06 1.53 22.42 16 8 O -0.64 -24.69 16.01 -4.00 -0.06 -24.76 16 9 N -0.73 -20.80 5.56 -478.54 -2.66 -23.46 16 10 C 0.15 5.48 5.67 86.38 0.49 5.97 16 11 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 12 C 0.02 1.23 4.97 29.85 0.15 1.38 16 13 C -0.54 -30.27 9.11 25.60 0.23 -30.04 16 14 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 15 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 16 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 17 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 C -0.11 -1.61 1.88 -10.70 -0.02 -1.63 16 22 H 0.09 1.47 7.45 -2.39 -0.02 1.45 16 23 C -0.12 -1.30 4.96 30.71 0.15 -1.14 16 24 C -0.15 -1.44 6.14 30.68 0.19 -1.25 16 25 C 0.05 0.60 6.84 72.01 0.49 1.09 16 26 O -0.40 -7.26 10.77 -148.98 -1.60 -8.87 16 27 C 0.07 1.09 5.88 72.01 0.42 1.51 16 28 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 1.11 6.84 -2.39 -0.02 1.09 16 33 H 0.41 6.69 8.18 -92.71 -0.76 5.93 16 34 H 0.41 8.96 8.49 -92.70 -0.79 8.17 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 39 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 41 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.08 0.79 6.81 -2.39 -0.02 0.78 16 43 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.09 1.52 7.30 -2.39 -0.02 1.50 16 Total: -1.00 -73.20 392.52 -0.08 -73.27 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -0.61 Total: 19.56 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.98 Total: 1.14 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -4.35 Total: -97.82 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -3.12 Total: -42.28 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -73.20 -0.08 -73.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884123777.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.116 kcal (2) G-P(sol) polarization free energy of solvation -73.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds