Wall clock time and date at job start Tue Mar 31 2020 10:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.46955 * 2 1 4 4 C 1.42903 * 113.99709 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47048 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.47045 * 64.99797 * 5 4 3 7 7 C 1.42900 * 113.99516 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46926 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46960 * 65.00157 * 8 7 6 10 10 C 1.34781 * 120.00112 * 180.02562 * 9 8 7 11 11 O 1.21583 * 119.99782 * 4.97935 * 10 9 8 12 12 N 1.34777 * 120.00020 * 184.98394 * 10 9 8 13 13 C 1.46920 * 120.62966 * 354.77097 * 12 10 9 14 14 C 1.53195 * 108.89195 * 233.67449 * 13 12 10 15 15 C 1.53034 * 109.30987 * 305.29089 * 14 13 12 16 16 C 1.53041 * 109.53698 * 61.37073 * 15 14 13 17 17 H 1.08995 * 109.49951 * 58.61570 * 16 15 14 18 18 C 1.50702 * 109.49878 * 178.67958 * 16 15 14 19 19 H 1.07999 * 119.99826 * 359.97438 * 18 16 15 20 20 C 1.37869 * 120.00156 * 179.97438 * 18 16 15 21 21 N 1.31522 * 119.99896 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00164 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47263 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47142 * 120.00335 * 22 20 18 25 25 H 1.48503 * 109.47061 * 239.99978 * 22 20 18 26 26 C 1.47201 * 120.81180 * 174.90792 * 12 10 9 27 27 H 1.09000 * 109.47003 * 59.99759 * 1 2 3 28 28 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46810 * 299.99609 * 1 2 3 30 30 H 1.08995 * 109.47321 * 240.00518 * 2 1 3 31 31 H 1.09003 * 109.47448 * 119.99992 * 2 1 3 32 32 H 1.08992 * 109.47577 * 60.00075 * 4 3 2 33 33 H 1.09004 * 109.47251 * 299.99559 * 4 3 2 34 34 H 1.09005 * 109.46802 * 304.99891 * 5 4 3 35 35 H 1.08994 * 109.47009 * 185.00024 * 5 4 3 36 36 H 1.09003 * 109.47061 * 60.00681 * 7 6 5 37 37 H 1.09001 * 109.47354 * 300.00122 * 7 6 5 38 38 H 1.09007 * 109.47220 * 305.00632 * 8 7 6 39 39 H 1.09002 * 109.47507 * 185.00365 * 8 7 6 40 40 H 0.96996 * 119.99935 * 0.02562 * 9 8 7 41 41 H 1.09008 * 109.58722 * 113.81679 * 13 12 10 42 42 H 1.09004 * 109.59155 * 353.53081 * 13 12 10 43 43 H 1.08998 * 109.49738 * 65.25124 * 14 13 12 44 44 H 1.08999 * 109.49589 * 185.34219 * 14 13 12 45 45 H 1.09001 * 109.45683 * 181.38095 * 15 14 13 46 46 H 1.08993 * 109.46741 * 301.34251 * 15 14 13 47 47 H 0.97003 * 119.99421 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.53945 * 6.53553 * 26 12 10 49 49 H 1.09004 * 109.67937 * 246.23280 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 8 3.3986 3.5448 1.2217 7 6 3.7194 4.9335 1.3243 8 6 3.2176 5.4752 2.6644 9 7 3.9472 4.8271 3.7571 10 6 3.6709 5.1494 5.0363 11 8 2.7558 5.9094 5.2876 12 7 4.4090 4.6293 6.0368 13 6 5.4428 3.6228 5.7593 14 6 5.1915 2.3970 6.6430 15 6 5.1219 2.8348 8.1077 16 6 3.9589 3.8118 8.2951 17 1 3.0279 3.3311 7.9948 18 6 3.8711 4.2172 9.7439 19 1 4.5740 3.8179 10.4600 20 6 2.8934 5.0980 10.1552 21 7 2.0370 5.5839 9.2833 22 14 2.7849 5.6011 11.9509 23 1 3.8561 4.9199 12.7214 24 1 2.9536 7.0721 12.0639 25 1 1.4591 5.2117 12.4949 26 6 4.1962 5.0537 7.4301 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8333 0.9768 -0.8907 33 1 3.8340 0.9765 0.8892 34 1 3.3492 3.4419 -0.8412 35 1 4.9081 3.0255 -0.0899 36 1 3.2406 5.4781 0.5105 37 1 4.8000 5.0624 1.2616 38 1 2.1524 5.2665 2.7647 39 1 3.3824 6.5518 2.7058 40 1 4.6290 4.1660 3.5599 41 1 6.4260 4.0380 5.9812 42 1 5.3974 3.3321 4.7097 43 1 4.2490 1.9298 6.3576 44 1 6.0053 1.6832 6.5149 45 1 4.9676 1.9610 8.7409 46 1 6.0555 3.3239 8.3854 47 1 1.3494 6.2039 9.5727 48 1 3.3258 5.7077 7.4831 49 1 5.0762 5.5869 7.7899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927533363.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:25 Heat of formation + Delta-G solvation = -126.361345 kcal Electronic energy + Delta-G solvation = -27009.689393 eV Core-core repulsion = 23165.011454 eV Total energy + Delta-G solvation = -3844.677938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.63262 -38.73573 -37.66654 -36.70359 -34.35277 -33.23161 -32.06777 -31.64253 -30.04115 -29.53442 -28.26917 -24.99678 -24.37591 -23.02864 -22.83075 -22.37296 -21.70416 -20.01819 -18.75583 -17.50037 -17.34283 -17.11647 -16.24050 -16.03038 -15.97393 -15.26664 -15.05538 -14.81075 -14.46629 -13.91665 -13.80427 -13.61353 -13.45923 -13.29500 -12.96348 -12.77926 -12.52921 -12.49654 -12.25043 -11.89638 -11.81836 -11.71110 -11.65585 -11.33176 -11.13393 -10.94363 -10.82988 -10.42733 -10.32694 -10.16192 -9.88314 -9.83725 -9.79879 -9.32981 -9.02149 -8.86153 -8.61668 -8.35050 -7.53928 -5.91100 -4.00496 3.29949 3.35628 3.38646 3.43004 3.44857 3.46233 3.97568 4.46193 4.54934 4.65938 4.77466 4.86293 4.86892 4.98740 5.04302 5.09512 5.13008 5.14731 5.19951 5.37353 5.38597 5.40880 5.50992 5.57655 5.67413 5.68903 5.77370 5.90374 5.99897 6.05518 6.24076 6.38540 6.66037 6.75038 6.87341 6.88800 6.94356 7.03721 7.06793 7.13321 7.44419 7.60725 7.83382 8.01760 8.14937 8.48618 8.70953 9.03558 9.37971 9.64775 11.13703 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.015873 B = 0.002746 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.629779 B =10195.762509 C =10515.701158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.064 3.936 5 C 0.063 3.937 6 O -0.374 6.374 7 C 0.051 3.949 8 C 0.143 3.857 9 N -0.752 5.752 10 C 0.700 3.300 11 O -0.584 6.584 12 N -0.624 5.624 13 C 0.117 3.883 14 C -0.133 4.133 15 C -0.109 4.109 16 C 0.039 3.961 17 H 0.029 0.971 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.877 5.877 22 Si 0.891 3.109 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.129 3.871 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.392 0.608 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.262 0.738 48 H 0.122 0.878 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 -8.424 -22.033 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.013 4.013 5 C -0.013 4.013 6 O -0.293 6.293 7 C -0.026 4.026 8 C 0.018 3.982 9 N -0.413 5.413 10 C 0.402 3.598 11 O -0.461 6.461 12 N -0.361 5.361 13 C -0.008 4.008 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.020 3.980 17 H 0.047 0.953 18 C -0.559 4.559 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.515 5.515 22 Si 0.719 3.281 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.211 1.211 26 C 0.009 3.991 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.228 0.772 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.140 0.860 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.116 -7.638 -21.701 23.568 hybrid contribution 0.628 -0.222 0.560 0.870 sum 5.744 -7.860 -21.141 23.275 Atomic orbital electron populations 1.21739 0.93656 1.02183 1.03353 1.22460 0.95827 0.83808 0.99861 1.87982 1.20368 1.26255 1.95361 1.22500 0.82409 0.95591 1.00770 1.22503 0.98139 0.92721 0.87973 1.88061 1.80979 1.22752 1.37489 1.22809 0.99340 0.82663 0.97746 1.21090 0.97555 0.96413 0.83112 1.45222 1.44142 1.47319 1.04576 1.15942 0.82301 0.81327 0.80279 1.90923 1.31580 1.40908 1.82724 1.47819 1.37170 1.42619 1.08452 1.21463 0.91644 0.89788 0.97885 1.21940 1.01013 0.96359 0.97841 1.21607 1.00480 0.99760 0.92839 1.18985 0.93081 0.91220 0.94755 0.95304 1.21108 1.14794 1.27174 0.92847 0.92389 1.25070 0.95503 0.96155 0.97386 1.69929 1.17232 1.30999 1.33301 0.86557 0.77834 0.78314 0.85414 1.19854 1.21018 1.21064 1.22198 1.02266 1.00132 0.74515 0.91991 0.91167 0.91490 0.93716 0.93268 0.92054 0.92315 0.92505 0.91874 0.91752 0.92833 0.90888 0.90511 0.77209 0.92350 0.92193 0.92181 0.92452 0.93144 0.93257 0.92753 0.85991 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.38 -4.32 10.31 -40.08 -0.41 -4.74 16 4 C 0.06 0.55 6.32 37.16 0.23 0.79 16 5 C 0.06 0.54 6.32 37.16 0.23 0.77 16 6 O -0.37 -4.44 10.25 -40.08 -0.41 -4.85 16 7 C 0.05 0.52 6.07 37.16 0.23 0.74 16 8 C 0.14 1.99 6.06 -4.04 -0.02 1.96 16 9 N -0.75 -12.21 5.41 -65.22 -0.35 -12.56 16 10 C 0.70 15.18 8.30 -86.91 -0.72 14.46 16 11 O -0.58 -15.43 15.79 5.29 0.08 -15.34 16 12 N -0.62 -13.22 2.98 -178.27 -0.53 -13.75 16 13 C 0.12 1.90 6.38 -3.71 -0.02 1.87 16 14 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 15 C -0.11 -2.24 5.11 -26.69 -0.14 -2.37 16 16 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.52 -14.44 8.56 -34.44 -0.29 -14.73 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.88 -26.35 11.40 55.43 0.63 -25.71 16 22 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.13 3.27 5.42 -3.56 -0.02 3.25 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.39 5.39 5.96 -40.82 -0.24 5.14 16 41 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 42 H 0.06 0.80 5.64 -51.93 -0.29 0.51 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.12 3.61 5.14 -51.93 -0.27 3.34 16 49 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -34.93 391.76 -9.27 -44.20 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -8.80 Total: 3.52 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.36 Total: 6.67 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.25 Total: -52.03 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.74 Total: -24.93 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.93 -9.27 -44.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927533363.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.162 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds