Wall clock time and date at job start Tue Mar 31 2020 10:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.46955 * 2 1 4 4 C 1.42903 * 113.99709 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47048 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.47045 * 64.99797 * 5 4 3 7 7 C 1.42900 * 113.99516 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46926 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46960 * 65.00157 * 8 7 6 10 10 C 1.34781 * 120.00112 * 180.02562 * 9 8 7 11 11 O 1.21583 * 119.99782 * 4.97935 * 10 9 8 12 12 N 1.34777 * 120.00020 * 184.98394 * 10 9 8 13 13 C 1.46920 * 120.62966 * 354.77097 * 12 10 9 14 14 C 1.53195 * 108.89195 * 233.67449 * 13 12 10 15 15 C 1.53034 * 109.30987 * 305.29089 * 14 13 12 16 16 C 1.53041 * 109.53698 * 61.37073 * 15 14 13 17 17 H 1.08995 * 109.49951 * 58.61570 * 16 15 14 18 18 C 1.50702 * 109.49878 * 178.67958 * 16 15 14 19 19 H 1.07999 * 119.99826 * 359.97438 * 18 16 15 20 20 C 1.37869 * 120.00156 * 179.97438 * 18 16 15 21 21 N 1.31522 * 119.99896 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00164 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47263 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47142 * 120.00335 * 22 20 18 25 25 H 1.48503 * 109.47061 * 239.99978 * 22 20 18 26 26 C 1.47201 * 120.81180 * 174.90792 * 12 10 9 27 27 H 1.09000 * 109.47003 * 59.99759 * 1 2 3 28 28 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46810 * 299.99609 * 1 2 3 30 30 H 1.08995 * 109.47321 * 240.00518 * 2 1 3 31 31 H 1.09003 * 109.47448 * 119.99992 * 2 1 3 32 32 H 1.08992 * 109.47577 * 60.00075 * 4 3 2 33 33 H 1.09004 * 109.47251 * 299.99559 * 4 3 2 34 34 H 1.09005 * 109.46802 * 304.99891 * 5 4 3 35 35 H 1.08994 * 109.47009 * 185.00024 * 5 4 3 36 36 H 1.09003 * 109.47061 * 60.00681 * 7 6 5 37 37 H 1.09001 * 109.47354 * 300.00122 * 7 6 5 38 38 H 1.09007 * 109.47220 * 305.00632 * 8 7 6 39 39 H 1.09002 * 109.47507 * 185.00365 * 8 7 6 40 40 H 0.96996 * 119.99935 * 0.02562 * 9 8 7 41 41 H 1.09008 * 109.58722 * 113.81679 * 13 12 10 42 42 H 1.09004 * 109.59155 * 353.53081 * 13 12 10 43 43 H 1.08998 * 109.49738 * 65.25124 * 14 13 12 44 44 H 1.08999 * 109.49589 * 185.34219 * 14 13 12 45 45 H 1.09001 * 109.45683 * 181.38095 * 15 14 13 46 46 H 1.08993 * 109.46741 * 301.34251 * 15 14 13 47 47 H 0.97003 * 119.99421 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.53945 * 6.53553 * 26 12 10 49 49 H 1.09004 * 109.67937 * 246.23280 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 8 3.3986 3.5448 1.2217 7 6 3.7194 4.9335 1.3243 8 6 3.2176 5.4752 2.6644 9 7 3.9472 4.8271 3.7571 10 6 3.6709 5.1494 5.0363 11 8 2.7558 5.9094 5.2876 12 7 4.4090 4.6293 6.0368 13 6 5.4428 3.6228 5.7593 14 6 5.1915 2.3970 6.6430 15 6 5.1219 2.8348 8.1077 16 6 3.9589 3.8118 8.2951 17 1 3.0279 3.3311 7.9948 18 6 3.8711 4.2172 9.7439 19 1 4.5740 3.8179 10.4600 20 6 2.8934 5.0980 10.1552 21 7 2.0370 5.5839 9.2833 22 14 2.7849 5.6011 11.9509 23 1 3.8561 4.9199 12.7214 24 1 2.9536 7.0721 12.0639 25 1 1.4591 5.2117 12.4949 26 6 4.1962 5.0537 7.4301 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8333 0.9768 -0.8907 33 1 3.8340 0.9765 0.8892 34 1 3.3492 3.4419 -0.8412 35 1 4.9081 3.0255 -0.0899 36 1 3.2406 5.4781 0.5105 37 1 4.8000 5.0624 1.2616 38 1 2.1524 5.2665 2.7647 39 1 3.3824 6.5518 2.7058 40 1 4.6290 4.1660 3.5599 41 1 6.4260 4.0380 5.9812 42 1 5.3974 3.3321 4.7097 43 1 4.2490 1.9298 6.3576 44 1 6.0053 1.6832 6.5149 45 1 4.9676 1.9610 8.7409 46 1 6.0555 3.3239 8.3854 47 1 1.3494 6.2039 9.5727 48 1 3.3258 5.7077 7.4831 49 1 5.0762 5.5869 7.7899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927533363.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:24 Heat of formation + Delta-G solvation = -151.395468 kcal Electronic energy + Delta-G solvation = -27010.774954 eV Core-core repulsion = 23165.011454 eV Total energy + Delta-G solvation = -3845.763499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.24965 -39.51538 -38.65615 -38.19800 -35.83044 -35.13046 -33.45561 -32.70736 -31.56884 -30.71178 -29.23856 -26.99377 -25.97781 -23.68878 -23.61404 -23.46127 -23.27578 -21.71402 -20.40318 -19.08282 -18.23742 -18.09527 -17.83657 -17.37287 -16.77091 -16.61545 -16.24842 -16.15443 -15.99761 -15.22928 -15.14588 -15.07444 -14.71769 -14.50346 -14.30495 -14.10694 -14.00035 -13.62930 -13.44115 -13.42862 -12.90648 -12.86398 -12.64170 -12.49541 -12.33817 -12.26523 -12.19684 -12.07501 -11.84852 -11.81880 -11.61980 -11.21720 -10.94377 -10.80949 -10.57471 -10.51901 -10.50922 -10.13846 -9.23007 -8.07974 -6.26174 1.40729 1.41794 1.54421 1.82647 2.26936 2.43227 2.67782 2.78988 3.09762 3.21811 3.89950 4.04997 4.13611 4.16314 4.17026 4.22373 4.28599 4.29793 4.36675 4.46390 4.49401 4.51174 4.57141 4.61618 4.70312 4.74454 4.80999 4.81887 4.85730 4.90227 4.92487 5.02609 5.11065 5.25035 5.27749 5.28694 5.33723 5.56428 5.59524 5.67214 5.90951 6.00334 6.19211 6.22493 6.36709 6.37784 6.87782 7.16865 7.43955 7.71654 8.95321 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.015873 B = 0.002746 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.629779 B =10195.762509 C =10515.701158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.413 6.413 4 C 0.057 3.943 5 C 0.059 3.941 6 O -0.406 6.406 7 C 0.062 3.938 8 C 0.138 3.862 9 N -0.729 5.729 10 C 0.691 3.309 11 O -0.643 6.643 12 N -0.629 5.629 13 C 0.111 3.889 14 C -0.126 4.126 15 C -0.104 4.104 16 C 0.037 3.963 17 H -0.019 1.019 18 C -0.534 4.534 19 H 0.064 0.936 20 C 0.006 3.994 21 N -0.916 5.916 22 Si 0.960 3.040 23 H -0.259 1.259 24 H -0.282 1.282 25 H -0.284 1.284 26 C 0.143 3.857 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.081 0.919 40 H 0.408 0.592 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.043 0.957 44 H 0.106 0.894 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.259 0.741 48 H 0.073 0.927 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.133 -9.916 -23.592 27.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.333 6.333 4 C -0.019 4.019 5 C -0.017 4.017 6 O -0.327 6.327 7 C -0.014 4.014 8 C 0.014 3.986 9 N -0.389 5.389 10 C 0.392 3.608 11 O -0.525 6.525 12 N -0.365 5.365 13 C -0.011 4.011 14 C -0.164 4.164 15 C -0.141 4.141 16 C 0.018 3.982 17 H -0.001 1.001 18 C -0.573 4.573 19 H 0.082 0.918 20 C -0.193 4.193 21 N -0.554 5.554 22 Si 0.785 3.215 23 H -0.182 1.182 24 H -0.208 1.208 25 H -0.210 1.210 26 C 0.020 3.980 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.247 0.753 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.062 0.938 44 H 0.124 0.876 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.132 -9.188 -23.310 26.342 hybrid contribution -0.299 0.190 0.985 1.047 sum 7.832 -8.999 -22.325 25.312 Atomic orbital electron populations 1.21772 0.93732 1.03193 1.02275 1.22604 0.95914 0.83151 1.00802 1.87945 1.22118 1.27679 1.95585 1.22730 0.81237 0.96119 1.01847 1.22741 0.99947 0.92284 0.86711 1.88013 1.81844 1.23428 1.39378 1.22746 1.01007 0.82311 0.95345 1.21271 0.95907 0.96961 0.84511 1.45023 1.43964 1.46941 1.02942 1.16244 0.81738 0.80943 0.81850 1.90880 1.34173 1.43551 1.83871 1.47732 1.38260 1.43644 1.06817 1.21837 0.91013 0.88262 0.99986 1.21905 1.02145 0.97387 0.94961 1.21496 0.98359 0.98392 0.95884 1.18920 0.93190 0.92291 0.93816 1.00108 1.21548 1.14640 1.26793 0.94276 0.91792 1.25954 0.95217 0.96286 1.01824 1.70144 1.18007 1.31778 1.35494 0.85477 0.78039 0.77888 0.80080 1.18242 1.20806 1.20994 1.21617 1.00021 0.99201 0.77162 0.91980 0.89156 0.93594 0.91519 0.93449 0.89227 0.92855 0.92048 0.88831 0.89660 0.89907 0.93931 0.90129 0.75338 0.89853 0.88605 0.93797 0.87590 0.93051 0.92079 0.93240 0.90863 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.28 71.98 0.74 -1.68 16 2 C 0.05 0.84 6.66 71.98 0.48 1.32 16 3 O -0.41 -9.00 10.31 -144.34 -1.49 -10.49 16 4 C 0.06 0.86 6.32 71.98 0.45 1.31 16 5 C 0.06 0.83 6.32 71.98 0.45 1.29 16 6 O -0.41 -8.81 10.25 -144.34 -1.48 -10.29 16 7 C 0.06 1.10 6.07 71.98 0.44 1.53 16 8 C 0.14 3.78 6.06 86.38 0.52 4.30 16 9 N -0.73 -23.02 5.41 -478.52 -2.59 -25.61 16 10 C 0.69 30.64 8.30 179.05 1.49 32.12 16 11 O -0.64 -35.99 15.79 -3.98 -0.06 -36.05 16 12 N -0.63 -26.75 2.98 -836.18 -2.50 -29.24 16 13 C 0.11 3.29 6.38 86.36 0.55 3.84 16 14 C -0.13 -3.88 6.08 30.67 0.19 -3.70 16 15 C -0.10 -4.12 5.11 30.62 0.16 -3.96 16 16 C 0.04 1.96 2.25 -11.46 -0.03 1.93 16 17 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 18 C -0.53 -30.25 8.56 25.60 0.22 -30.03 16 19 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 20 C 0.01 0.37 5.30 84.65 0.45 0.82 16 21 N -0.92 -57.90 11.40 21.45 0.24 -57.66 16 22 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 26 C 0.14 7.48 5.42 86.31 0.47 7.94 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.41 10.09 5.96 -92.71 -0.55 9.53 16 41 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.10 2.15 5.64 -2.38 -0.01 2.14 16 43 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 48 H 0.07 4.61 5.14 -2.39 -0.01 4.60 16 49 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -83.13 391.76 1.10 -82.03 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.36 Total: 22.78 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 6.58 Total: 17.05 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -4.84 Total: -112.51 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -3.03 Total: -56.83 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -83.13 1.10 -82.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927533363.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.362 kcal (2) G-P(sol) polarization free energy of solvation -83.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds