Wall clock time and date at job start Tue Mar 31 2020 10:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99960 * 2 1 4 4 C 1.53002 * 109.47002 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46736 * 179.97438 * 4 3 2 6 6 O 1.42907 * 109.46631 * 180.02562 * 5 4 3 7 7 C 1.42900 * 113.99569 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47002 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47431 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99626 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00066 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00059 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47425 * 180.02562 * 12 11 9 14 14 C 1.53781 * 113.61609 * 175.00005 * 13 12 11 15 15 C 1.53781 * 87.08070 * 139.98229 * 14 13 12 16 16 N 1.46497 * 113.61305 * 219.93536 * 15 14 13 17 17 C 1.36944 * 119.99791 * 203.46713 * 16 15 14 18 18 H 1.07993 * 120.00042 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99770 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00274 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99962 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47017 * 89.99868 * 21 19 17 23 23 H 1.48492 * 109.47131 * 210.00443 * 21 19 17 24 24 H 1.48501 * 109.46802 * 330.00196 * 21 19 17 25 25 C 1.53786 * 87.17350 * 334.52830 * 15 14 13 26 26 H 1.09005 * 109.47376 * 300.00285 * 1 2 3 27 27 H 1.09003 * 109.47146 * 59.99885 * 1 2 3 28 28 H 1.08999 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47071 * 60.00177 * 3 2 1 30 30 H 1.09007 * 109.46967 * 299.99752 * 3 2 1 31 31 H 1.09004 * 109.47147 * 60.00120 * 4 3 2 32 32 H 1.08998 * 109.47175 * 299.99513 * 4 3 2 33 33 H 1.08996 * 109.47113 * 60.00543 * 5 4 3 34 34 H 1.08993 * 109.47487 * 299.99708 * 5 4 3 35 35 H 1.09005 * 109.47463 * 60.00300 * 7 6 5 36 36 H 1.08995 * 109.47025 * 299.99420 * 7 6 5 37 37 H 1.09005 * 109.47358 * 59.99470 * 8 7 6 38 38 H 1.09006 * 109.47182 * 300.00156 * 8 7 6 39 39 H 0.96996 * 120.00586 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.47114 * 60.00231 * 12 11 9 41 41 H 1.09006 * 109.47306 * 300.00712 * 12 11 9 42 42 H 1.08996 * 112.84723 * 43.80825 * 13 12 11 43 43 H 1.08999 * 113.61181 * 25.43284 * 14 13 12 44 44 H 1.08998 * 113.61680 * 254.52836 * 14 13 12 45 45 H 1.09002 * 113.61445 * 89.11830 * 15 14 13 46 46 H 0.96995 * 120.00146 * 23.47603 * 16 15 14 47 47 H 0.96996 * 120.00281 * 179.97438 * 20 19 17 48 48 H 1.08992 * 113.61675 * 140.02412 * 25 15 14 49 49 H 1.09000 * 113.60973 * 270.92699 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 8 5.5823 2.4696 -0.0025 7 6 6.2647 3.7251 -0.0026 8 6 7.7757 3.4842 -0.0033 9 6 8.4954 4.8082 -0.0040 10 8 7.8622 5.8426 -0.0035 11 7 9.8427 4.8428 -0.0042 12 6 10.5424 6.1299 -0.0043 13 6 12.0534 5.8890 -0.0051 14 6 12.8826 7.1783 -0.1281 15 6 13.8448 6.5643 0.9024 16 7 14.3434 7.5279 1.8867 17 6 15.5230 7.2906 2.5406 18 1 16.0858 6.3932 2.3304 19 6 15.9957 8.2040 3.4729 20 7 15.3100 9.2980 3.7288 21 14 17.6051 7.8806 4.3645 22 1 18.7272 8.4675 3.5889 23 1 17.5573 8.5009 5.7128 24 1 17.8100 6.4161 4.5003 25 6 12.6539 5.7309 1.4046 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8901 31 1 3.8567 0.6439 -0.8909 32 1 3.8574 0.6437 0.8891 33 1 3.8365 3.1235 0.8887 34 1 3.8357 3.1231 -0.8912 35 1 5.9876 4.2894 0.8879 36 1 5.9861 4.2899 -0.8922 37 1 8.0533 2.9196 -0.8934 38 1 8.0540 2.9194 0.8865 39 1 10.3492 4.0155 -0.0042 40 1 10.2647 6.6945 0.8857 41 1 10.2644 6.6946 -0.8943 42 1 12.3569 5.1067 -0.7007 43 1 12.3647 8.0667 0.2332 44 1 13.3287 7.3182 -1.1128 45 1 14.6391 5.9659 0.4559 46 1 13.8380 8.3341 2.0753 47 1 15.6401 9.9360 4.3805 48 1 12.9155 4.7032 1.6566 49 1 12.0736 6.2244 2.1843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100838305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:13 Heat of formation + Delta-G solvation = -114.880574 kcal Electronic energy + Delta-G solvation = -24630.647364 eV Core-core repulsion = 20786.467269 eV Total energy + Delta-G solvation = -3844.180095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98874 -38.80698 -38.47989 -37.96022 -34.74075 -33.61927 -33.29434 -31.58555 -30.22005 -27.74667 -27.24437 -25.28567 -25.10429 -24.12120 -23.33457 -22.08781 -21.06478 -20.44296 -19.05530 -17.72911 -17.10572 -17.06933 -16.87851 -16.39041 -16.28146 -16.06276 -15.51129 -15.24096 -14.86265 -14.73688 -14.46869 -14.25735 -13.76896 -13.51351 -13.43908 -13.01327 -12.83291 -12.40159 -12.12177 -12.05020 -11.90525 -11.81602 -11.73150 -11.39704 -11.36419 -11.35122 -11.24519 -10.85197 -10.54400 -10.29507 -10.20941 -10.15711 -9.97414 -9.90435 -9.83118 -9.50075 -9.07177 -8.87723 -6.97257 -5.79184 -3.08154 2.51242 2.67184 3.17706 3.42125 3.47302 3.49099 3.77018 4.41013 4.49286 4.57545 4.57882 4.67691 4.71657 4.79848 4.82004 4.85769 4.91829 4.94711 4.98385 5.01645 5.10434 5.17351 5.20039 5.25859 5.43456 5.45592 5.48840 5.49838 5.61179 5.67515 5.80216 5.83085 5.91618 6.08021 6.23278 6.29290 6.34513 6.42753 6.57960 6.59923 6.79847 6.81053 7.10110 7.39824 7.68240 8.10102 8.39410 9.50483 10.08721 10.42861 11.43239 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.032759 B = 0.001405 C = 0.001381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.529504 B =19919.513106 C =20267.045951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.064 3.936 4 C -0.119 4.119 5 C 0.068 3.932 6 O -0.390 6.390 7 C 0.079 3.921 8 C -0.140 4.140 9 C 0.514 3.486 10 O -0.546 6.546 11 N -0.723 5.723 12 C 0.131 3.869 13 C -0.128 4.128 14 C -0.142 4.142 15 C 0.165 3.835 16 N -0.713 5.713 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.161 4.161 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.402 0.598 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.054 0.946 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.788 -16.789 -10.804 32.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.013 4.013 4 C -0.157 4.157 5 C -0.009 4.009 6 O -0.310 6.310 7 C 0.002 3.998 8 C -0.180 4.180 9 C 0.300 3.700 10 O -0.424 6.424 11 N -0.374 5.374 12 C 0.008 3.992 13 C -0.147 4.147 14 C -0.181 4.181 15 C 0.053 3.947 16 N -0.351 5.351 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.202 4.202 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.236 0.764 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.828 -16.397 -10.702 32.411 hybrid contribution 0.589 0.221 0.620 0.883 sum -25.239 -16.176 -10.082 31.628 Atomic orbital electron populations 1.22764 0.80678 1.02965 1.00106 1.87870 1.19962 1.27765 1.95455 1.22375 0.93476 0.84913 1.00525 1.21370 0.92654 0.96824 1.04827 1.22273 0.81100 0.96834 1.00660 1.87782 1.17871 1.29691 1.95613 1.22122 0.90762 0.85035 1.01886 1.21471 0.94665 0.96115 1.05775 1.20364 0.82600 0.90875 0.76141 1.90722 1.66507 1.35380 1.49810 1.46037 1.06100 1.10379 1.74891 1.21458 0.91122 0.84445 1.02157 1.22694 0.92065 1.00011 0.99922 1.23425 0.98036 0.96321 1.00358 1.21528 0.92068 0.91434 0.89688 1.42412 1.24885 1.23020 1.44800 1.19306 0.97974 1.04166 1.16159 0.91093 1.24764 0.99010 0.96922 1.00144 1.69661 1.39387 1.11506 1.37480 0.86195 0.83524 0.77429 0.79073 1.21678 1.21753 1.20730 1.23995 1.00700 1.00931 0.94547 0.93929 0.93963 0.89445 0.92977 0.93021 0.90138 0.90090 0.92946 0.93006 0.92246 0.92327 0.88023 0.87891 0.76399 0.91164 0.91736 0.89336 0.90095 0.91972 0.90733 0.78072 0.93440 0.92735 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.08 10.70 -35.23 -0.38 -3.45 16 3 C 0.06 0.39 5.94 37.16 0.22 0.61 16 4 C -0.12 -0.81 5.95 -26.73 -0.16 -0.97 16 5 C 0.07 0.49 5.94 37.16 0.22 0.71 16 6 O -0.39 -3.65 10.34 -35.23 -0.36 -4.02 16 7 C 0.08 0.74 5.23 37.16 0.19 0.93 16 8 C -0.14 -1.18 6.07 -27.88 -0.17 -1.35 16 9 C 0.51 6.00 7.83 -10.99 -0.09 5.91 16 10 O -0.55 -8.56 15.98 5.56 0.09 -8.47 16 11 N -0.72 -7.67 5.56 -60.29 -0.33 -8.00 16 12 C 0.13 1.67 5.51 -4.04 -0.02 1.65 16 13 C -0.13 -1.65 3.76 -89.67 -0.34 -1.99 16 14 C -0.14 -2.21 7.39 -25.92 -0.19 -2.40 16 15 C 0.16 3.15 4.47 -67.12 -0.30 2.85 16 16 N -0.71 -17.71 5.41 -52.64 -0.28 -17.99 16 17 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 21 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.16 -2.60 7.45 -25.77 -0.19 -2.79 16 26 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.40 3.20 8.47 -40.82 -0.35 2.86 16 40 H 0.07 1.03 7.85 -51.93 -0.41 0.63 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.33 8.07 -51.93 -0.42 0.92 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 46 H 0.39 10.20 7.91 -40.82 -0.32 9.88 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 LS Contribution 406.72 15.07 6.13 6.13 Total: -1.00 -33.44 406.72 -8.45 -41.89 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -9.06 Total: 7.06 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 0.05 Total: -2.95 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.10 Total: -53.40 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.65 Total: -15.95 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.44 -8.45 -41.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100838305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.987 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds