Wall clock time and date at job start Tue Mar 31 2020 10:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99960 * 2 1 4 4 C 1.53002 * 109.47002 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46736 * 179.97438 * 4 3 2 6 6 O 1.42907 * 109.46631 * 180.02562 * 5 4 3 7 7 C 1.42900 * 113.99569 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47002 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47431 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99626 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00066 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00059 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47425 * 180.02562 * 12 11 9 14 14 C 1.53781 * 113.61609 * 175.00005 * 13 12 11 15 15 C 1.53781 * 87.08070 * 139.98229 * 14 13 12 16 16 N 1.46497 * 113.61305 * 219.93536 * 15 14 13 17 17 C 1.36944 * 119.99791 * 203.46713 * 16 15 14 18 18 H 1.07993 * 120.00042 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99770 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00274 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99962 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47017 * 89.99868 * 21 19 17 23 23 H 1.48492 * 109.47131 * 210.00443 * 21 19 17 24 24 H 1.48501 * 109.46802 * 330.00196 * 21 19 17 25 25 C 1.53786 * 87.17350 * 334.52830 * 15 14 13 26 26 H 1.09005 * 109.47376 * 300.00285 * 1 2 3 27 27 H 1.09003 * 109.47146 * 59.99885 * 1 2 3 28 28 H 1.08999 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47071 * 60.00177 * 3 2 1 30 30 H 1.09007 * 109.46967 * 299.99752 * 3 2 1 31 31 H 1.09004 * 109.47147 * 60.00120 * 4 3 2 32 32 H 1.08998 * 109.47175 * 299.99513 * 4 3 2 33 33 H 1.08996 * 109.47113 * 60.00543 * 5 4 3 34 34 H 1.08993 * 109.47487 * 299.99708 * 5 4 3 35 35 H 1.09005 * 109.47463 * 60.00300 * 7 6 5 36 36 H 1.08995 * 109.47025 * 299.99420 * 7 6 5 37 37 H 1.09005 * 109.47358 * 59.99470 * 8 7 6 38 38 H 1.09006 * 109.47182 * 300.00156 * 8 7 6 39 39 H 0.96996 * 120.00586 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.47114 * 60.00231 * 12 11 9 41 41 H 1.09006 * 109.47306 * 300.00712 * 12 11 9 42 42 H 1.08996 * 112.84723 * 43.80825 * 13 12 11 43 43 H 1.08999 * 113.61181 * 25.43284 * 14 13 12 44 44 H 1.08998 * 113.61680 * 254.52836 * 14 13 12 45 45 H 1.09002 * 113.61445 * 89.11830 * 15 14 13 46 46 H 0.96995 * 120.00146 * 23.47603 * 16 15 14 47 47 H 0.96996 * 120.00281 * 179.97438 * 20 19 17 48 48 H 1.08992 * 113.61675 * 140.02412 * 25 15 14 49 49 H 1.09000 * 113.60973 * 270.92699 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 8 5.5823 2.4696 -0.0025 7 6 6.2647 3.7251 -0.0026 8 6 7.7757 3.4842 -0.0033 9 6 8.4954 4.8082 -0.0040 10 8 7.8622 5.8426 -0.0035 11 7 9.8427 4.8428 -0.0042 12 6 10.5424 6.1299 -0.0043 13 6 12.0534 5.8890 -0.0051 14 6 12.8826 7.1783 -0.1281 15 6 13.8448 6.5643 0.9024 16 7 14.3434 7.5279 1.8867 17 6 15.5230 7.2906 2.5406 18 1 16.0858 6.3932 2.3304 19 6 15.9957 8.2040 3.4729 20 7 15.3100 9.2980 3.7288 21 14 17.6051 7.8806 4.3645 22 1 18.7272 8.4675 3.5889 23 1 17.5573 8.5009 5.7128 24 1 17.8100 6.4161 4.5003 25 6 12.6539 5.7309 1.4046 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8901 31 1 3.8567 0.6439 -0.8909 32 1 3.8574 0.6437 0.8891 33 1 3.8365 3.1235 0.8887 34 1 3.8357 3.1231 -0.8912 35 1 5.9876 4.2894 0.8879 36 1 5.9861 4.2899 -0.8922 37 1 8.0533 2.9196 -0.8934 38 1 8.0540 2.9194 0.8865 39 1 10.3492 4.0155 -0.0042 40 1 10.2647 6.6945 0.8857 41 1 10.2644 6.6946 -0.8943 42 1 12.3569 5.1067 -0.7007 43 1 12.3647 8.0667 0.2332 44 1 13.3287 7.3182 -1.1128 45 1 14.6391 5.9659 0.4559 46 1 13.8380 8.3341 2.0753 47 1 15.6401 9.9360 4.3805 48 1 12.9155 4.7032 1.6566 49 1 12.0736 6.2244 2.1843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100838305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:12 Heat of formation + Delta-G solvation = -139.012307 kcal Electronic energy + Delta-G solvation = -24631.693794 eV Core-core repulsion = 20786.467269 eV Total energy + Delta-G solvation = -3845.226525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.97405 -39.85325 -39.27151 -38.58788 -36.05629 -34.99839 -34.19976 -32.47622 -31.93209 -28.76255 -27.88050 -26.44853 -26.04121 -25.62523 -24.31982 -22.64991 -22.36142 -21.43413 -20.40698 -19.05568 -18.45425 -17.69316 -17.49499 -17.32964 -16.99463 -16.81027 -16.53219 -16.35992 -16.02690 -15.72656 -15.37222 -15.20254 -15.13890 -14.87674 -14.42593 -14.33018 -13.59822 -13.39018 -13.22648 -13.00848 -12.91039 -12.86789 -12.66731 -12.63906 -12.56833 -12.27275 -12.18100 -12.07146 -11.93237 -11.92417 -11.59683 -11.54684 -11.11054 -10.89982 -10.78135 -10.65627 -10.63115 -10.06584 -8.96878 -7.94100 -5.22402 1.47892 1.49456 1.57809 1.60753 1.94406 2.53270 2.57684 3.17809 3.38297 3.69478 3.75979 3.77855 3.91080 3.92263 4.05808 4.10193 4.11883 4.27252 4.30243 4.36615 4.39095 4.43916 4.44338 4.51381 4.53955 4.54877 4.57449 4.61994 4.78049 4.80964 4.84716 4.85813 4.98904 5.00199 5.07116 5.08163 5.12255 5.24015 5.37720 5.44815 5.54133 5.74899 6.11972 6.21647 6.28385 6.55933 7.24100 7.33875 8.12503 8.33968 9.29567 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.032759 B = 0.001405 C = 0.001381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.529504 B =19919.513106 C =20267.045951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.063 3.937 4 C -0.114 4.114 5 C 0.064 3.936 6 O -0.401 6.401 7 C 0.080 3.920 8 C -0.130 4.130 9 C 0.513 3.487 10 O -0.592 6.592 11 N -0.712 5.712 12 C 0.137 3.863 13 C -0.094 4.094 14 C -0.137 4.137 15 C 0.141 3.859 16 N -0.731 5.731 17 C -0.243 4.243 18 H 0.079 0.921 19 C -0.078 4.078 20 N -0.973 5.973 21 Si 0.972 3.028 22 H -0.287 1.287 23 H -0.298 1.298 24 H -0.267 1.267 25 C -0.153 4.153 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.418 0.582 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.124 0.876 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.068 0.932 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.025 -19.035 -12.020 34.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.013 4.013 4 C -0.151 4.151 5 C -0.012 4.012 6 O -0.320 6.320 7 C 0.003 3.997 8 C -0.170 4.170 9 C 0.301 3.699 10 O -0.473 6.473 11 N -0.364 5.364 12 C 0.013 3.987 13 C -0.113 4.113 14 C -0.176 4.176 15 C 0.031 3.969 16 N -0.368 5.368 17 C -0.375 4.375 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.624 5.624 21 Si 0.801 3.199 22 H -0.214 1.214 23 H -0.225 1.225 24 H -0.192 1.192 25 C -0.194 4.194 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.256 0.744 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.087 0.913 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.065 -18.731 -11.961 34.253 hybrid contribution 0.590 0.867 0.937 1.407 sum -25.474 -17.864 -11.024 33.009 Atomic orbital electron populations 1.22935 0.79267 1.03876 1.00997 1.87823 1.21649 1.28764 1.95660 1.22424 0.92772 0.84604 1.01546 1.21308 0.93381 0.96424 1.04017 1.22405 0.80130 0.97198 1.01502 1.87756 1.19008 1.29616 1.95669 1.22064 0.91513 0.84979 1.01164 1.21431 0.93535 0.94314 1.07688 1.20916 0.82659 0.91450 0.74925 1.90709 1.67423 1.37237 1.51889 1.45895 1.05999 1.10292 1.74203 1.21220 0.91043 0.85341 1.01084 1.22520 0.91654 0.99123 0.98042 1.23312 0.97399 0.97008 0.99904 1.21990 0.93343 0.91585 0.89947 1.42639 1.24353 1.23748 1.46091 1.19747 0.98525 1.03845 1.15375 0.90265 1.25578 1.02523 0.97131 1.01765 1.69825 1.41264 1.12693 1.38593 0.85154 0.79604 0.77827 0.77288 1.21403 1.22490 1.19217 1.23766 0.99031 1.00678 0.95906 0.93090 0.92995 0.88645 0.92044 0.91870 0.90798 0.91010 0.92282 0.91988 0.93356 0.92836 0.85611 0.86233 0.74442 0.93665 0.91638 0.85844 0.91571 0.90249 0.90133 0.79699 0.94125 0.91284 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.42 -6.24 10.70 -148.98 -1.59 -7.84 16 3 C 0.06 0.70 5.94 71.98 0.43 1.12 16 4 C -0.11 -1.46 5.95 30.60 0.18 -1.28 16 5 C 0.06 0.85 5.94 71.98 0.43 1.27 16 6 O -0.40 -6.96 10.34 -148.98 -1.54 -8.50 16 7 C 0.08 1.40 5.23 71.98 0.38 1.77 16 8 C -0.13 -1.89 6.07 29.85 0.18 -1.70 16 9 C 0.51 11.12 7.83 87.66 0.69 11.80 16 10 O -0.59 -18.34 15.98 -3.04 -0.05 -18.39 16 11 N -0.71 -13.34 5.56 -463.06 -2.57 -15.91 16 12 C 0.14 3.26 5.51 86.38 0.48 3.74 16 13 C -0.09 -2.19 3.76 -10.18 -0.04 -2.23 16 14 C -0.14 -4.08 7.39 31.12 0.23 -3.85 16 15 C 0.14 5.23 4.47 45.52 0.20 5.43 16 16 N -0.73 -36.67 5.41 -320.44 -1.73 -38.41 16 17 C -0.24 -13.41 9.97 84.03 0.84 -12.57 16 18 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 19 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 20 N -0.97 -60.19 13.06 21.65 0.28 -59.90 16 21 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 C -0.15 -4.73 7.45 31.21 0.23 -4.50 16 26 H 0.05 0.32 8.14 -2.38 -0.02 0.30 16 27 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 36 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 37 H 0.13 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.42 5.11 8.47 -92.71 -0.79 4.32 16 40 H 0.04 1.33 7.85 -2.39 -0.02 1.31 16 41 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.08 2.89 8.11 -2.39 -0.02 2.87 16 46 H 0.37 20.31 7.91 -92.71 -0.73 19.58 16 47 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 48 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.05 1.97 7.90 -2.39 -0.02 1.95 16 Total: -1.00 -73.68 406.72 0.16 -73.52 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -0.60 Total: 30.94 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 5.94 Total: -3.56 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -4.02 Total: -114.22 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -3.18 Total: -34.73 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -73.68 0.16 -73.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100838305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.490 kcal (2) G-P(sol) polarization free energy of solvation -73.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds