Wall clock time and date at job start Tue Mar 31 2020 11:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46632 * 2 1 4 4 C 1.53001 * 109.46886 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46906 * 55.00224 * 7 6 5 9 9 F 1.39902 * 109.47208 * 295.00263 * 7 6 5 10 10 C 1.50699 * 109.47482 * 174.99860 * 7 6 5 11 11 O 1.21277 * 120.00078 * 45.00310 * 10 7 6 12 12 N 1.34779 * 120.00180 * 224.99796 * 10 7 6 13 13 C 1.46501 * 119.99781 * 179.97438 * 12 10 7 14 14 C 1.52997 * 109.46847 * 180.02562 * 13 12 10 15 15 C 1.53786 * 113.61506 * 274.13895 * 14 13 12 16 16 C 1.53955 * 87.01830 * 220.04936 * 15 14 13 17 17 N 1.46505 * 113.53837 * 270.80723 * 16 15 14 18 18 C 1.36933 * 120.00085 * 252.50194 * 17 16 15 19 19 H 1.07994 * 120.00249 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99851 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00381 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00056 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47136 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47436 * 119.99873 * 22 20 18 25 25 H 1.48508 * 109.46800 * 239.99953 * 22 20 18 26 26 C 1.53780 * 87.11464 * 25.36267 * 16 15 14 27 27 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47420 * 299.99415 * 1 2 3 29 29 H 1.08992 * 109.47457 * 59.99756 * 1 2 3 30 30 H 1.08992 * 109.46876 * 240.00480 * 2 1 3 31 31 H 1.09001 * 109.46735 * 120.00028 * 2 1 3 32 32 H 1.09001 * 109.46741 * 60.00169 * 3 2 1 33 33 H 1.09002 * 109.47398 * 300.00272 * 3 2 1 34 34 H 1.09001 * 109.46652 * 60.00345 * 4 3 2 35 35 H 1.08992 * 109.47514 * 300.00434 * 4 3 2 36 36 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 37 37 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 38 38 H 1.09002 * 109.47153 * 300.00319 * 6 5 4 39 39 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 40 40 H 0.96997 * 120.00295 * 0.02562 * 12 10 7 41 41 H 1.09000 * 109.47368 * 300.00327 * 13 12 10 42 42 H 1.08997 * 109.46871 * 60.00842 * 13 12 10 43 43 H 1.09003 * 112.85424 * 45.33621 * 14 13 12 44 44 H 1.09001 * 113.61107 * 334.56592 * 15 14 13 45 45 H 1.08995 * 113.61689 * 105.46885 * 15 14 13 46 46 H 1.09002 * 113.74273 * 139.94629 * 16 15 14 47 47 H 0.96996 * 119.99632 * 72.49255 * 17 16 15 48 48 H 0.96999 * 120.00748 * 180.02562 * 21 20 18 49 49 H 1.09005 * 113.61406 * 220.09530 * 26 16 15 50 50 H 1.08997 * 113.61869 * 89.18617 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8852 0.0013 6 6 5.6098 2.8853 0.0013 7 6 6.1197 4.3277 0.0026 8 1 5.6851 4.8659 0.8449 9 9 5.7496 4.9543 -1.1923 10 6 7.6216 4.3295 0.1264 11 8 8.2862 3.5670 -0.5427 12 7 8.2264 5.1786 0.9808 13 6 9.6864 5.1799 1.1015 14 6 10.1120 6.2285 2.1312 15 6 10.2692 7.6408 1.5433 16 6 11.5159 7.7860 2.4348 17 7 11.2232 8.3196 3.7675 18 6 11.5868 9.6004 4.0872 19 1 12.0896 10.2172 3.3571 20 6 11.3100 10.1058 5.3501 21 7 10.6976 9.3540 6.2401 22 14 11.8066 11.8529 5.7865 23 1 12.4760 12.4831 4.6204 24 1 10.5973 12.6360 6.1464 25 1 12.7418 11.8282 6.9398 26 6 11.6267 6.2527 2.3958 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6765 1.9563 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 3.9336 0.9287 -0.8892 35 1 3.9330 0.9289 0.8907 36 1 3.7168 3.3993 -0.8886 37 1 3.7162 3.3987 0.8913 38 1 5.9732 2.3710 0.8910 39 1 5.9732 2.3719 -0.8889 40 1 7.6949 5.7883 1.5162 41 1 10.0252 4.1955 1.4246 42 1 10.1306 5.4180 0.1351 43 1 9.5105 6.1982 3.0397 44 1 10.4923 7.6473 0.4764 45 1 9.4583 8.3181 1.8113 46 1 12.3467 8.2964 1.9477 47 1 10.7718 7.7655 4.4233 48 1 10.5038 9.7072 7.1224 49 1 11.9101 5.8109 3.3512 50 1 12.2216 5.8789 1.5625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100868613.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:55 Heat of formation + Delta-G solvation = -114.446002 kcal Electronic energy + Delta-G solvation = -25338.029846 eV Core-core repulsion = 21506.241385 eV Total energy + Delta-G solvation = -3831.788461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.94127 -40.92838 -39.85338 -37.53020 -36.10057 -35.02348 -34.88649 -32.19881 -31.45239 -29.16390 -27.31339 -26.44312 -25.67462 -24.22793 -23.00536 -21.96491 -21.94042 -21.52823 -19.89625 -19.35067 -18.61680 -18.00334 -17.17065 -16.78300 -16.70253 -16.28950 -16.14447 -15.91898 -15.55452 -15.30602 -15.11427 -14.74681 -14.68078 -14.52938 -14.16367 -13.85663 -13.72772 -13.41363 -13.30054 -13.15721 -12.95652 -12.92213 -12.68578 -12.61565 -12.29663 -12.13305 -12.07331 -12.03718 -11.79457 -11.59204 -11.56093 -11.48923 -11.40792 -11.32754 -11.02528 -10.88773 -10.68750 -10.19126 -8.99650 -7.95662 -5.23572 1.29355 1.48267 1.48917 1.58676 1.92769 2.55766 3.35087 3.38047 3.43719 3.66477 3.71249 3.77863 3.81934 3.87438 4.01064 4.08792 4.14285 4.18046 4.31661 4.34659 4.39388 4.43743 4.59555 4.64504 4.70739 4.73460 4.80700 4.90692 4.92576 4.95311 4.96284 4.98807 5.09808 5.10241 5.15993 5.21860 5.25377 5.27719 5.34024 5.40212 5.45136 5.49725 5.53371 5.54474 5.65687 6.28327 6.34510 6.99327 7.33719 8.10562 8.33064 9.27680 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.001826 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.399010 B =15328.464046 C =16171.555787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.132 4.132 7 C 0.084 3.916 8 H 0.135 0.865 9 F -0.203 7.203 10 C 0.487 3.513 11 O -0.568 6.568 12 N -0.706 5.706 13 C 0.136 3.864 14 C -0.101 4.101 15 C -0.155 4.155 16 C 0.142 3.858 17 N -0.719 5.719 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.073 4.073 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.294 1.294 25 H -0.295 1.295 26 C -0.134 4.134 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.416 0.584 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.375 0.625 48 H 0.251 0.749 49 H 0.059 0.941 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.555 -16.698 -12.925 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.155 4.155 5 C -0.153 4.153 6 C -0.170 4.170 7 C 0.045 3.955 8 H 0.153 0.847 9 F -0.184 7.184 10 C 0.271 3.729 11 O -0.446 6.446 12 N -0.358 5.358 13 C 0.013 3.987 14 C -0.120 4.120 15 C -0.195 4.195 16 C 0.032 3.968 17 N -0.357 5.357 18 C -0.374 4.374 19 H 0.094 0.906 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.800 3.200 23 H -0.191 1.191 24 H -0.221 1.221 25 H -0.222 1.222 26 C -0.173 4.173 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.253 0.747 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.207 0.793 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.978 -17.021 -13.438 26.937 hybrid contribution -0.022 1.133 0.877 1.433 sum -16.001 -15.888 -12.561 25.812 Atomic orbital electron populations 1.21788 0.95655 1.01816 1.01879 1.21550 0.96111 0.96839 1.01962 1.21609 0.94906 0.96919 1.02213 1.21564 0.95729 0.95979 1.02255 1.21578 0.92530 0.98024 1.03195 1.22043 0.97694 0.92650 1.04632 1.21820 0.90217 0.97376 0.86124 0.84714 1.92859 1.91949 1.84176 1.49399 1.21462 0.91444 0.80267 0.79686 1.90704 1.67317 1.41147 1.45470 1.46111 1.08668 1.38750 1.42269 1.21384 0.79254 0.99153 0.98912 1.22500 0.97290 0.94292 0.97915 1.23746 1.00259 0.95922 0.99604 1.21431 0.95746 0.93559 0.86031 1.42288 1.69763 1.12794 1.10853 1.19701 1.30057 0.90767 0.96848 0.90635 1.25509 1.02280 1.02107 0.96657 1.69802 1.48641 1.37644 1.05766 0.85112 0.77011 0.80108 0.77760 1.19135 1.22110 1.22188 1.23342 0.95192 0.96679 1.02136 0.92525 0.92632 0.92775 0.92260 0.91995 0.91645 0.92148 0.92352 0.91500 0.91785 0.90162 0.88914 0.91257 0.74733 0.91305 0.91488 0.89592 0.89287 0.93170 0.92309 0.79279 0.94026 0.92192 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.13 -1.30 5.93 30.60 0.18 -1.12 16 3 C -0.12 -1.26 5.21 30.59 0.16 -1.10 16 4 C -0.12 -1.35 5.21 30.59 0.16 -1.19 16 5 C -0.12 -1.41 5.13 30.59 0.16 -1.25 16 6 C -0.13 -2.05 4.69 30.59 0.14 -1.91 16 7 C 0.08 1.46 3.77 29.85 0.11 1.57 16 8 H 0.14 1.42 8.00 -2.39 -0.02 1.40 16 9 F -0.20 -4.54 16.75 44.97 0.75 -3.78 16 10 C 0.49 11.50 7.17 87.66 0.63 12.13 16 11 O -0.57 -17.97 16.61 -3.02 -0.05 -18.02 16 12 N -0.71 -14.93 5.56 -463.07 -2.57 -17.50 16 13 C 0.14 3.21 5.50 86.38 0.47 3.69 16 14 C -0.10 -2.71 3.62 -10.26 -0.04 -2.75 16 15 C -0.15 -4.74 7.44 31.18 0.23 -4.51 16 16 C 0.14 5.28 4.57 45.58 0.21 5.49 16 17 N -0.72 -34.67 5.31 -320.17 -1.70 -36.37 16 18 C -0.24 -13.08 9.97 84.03 0.84 -12.24 16 19 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 20 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 21 N -0.97 -57.63 13.06 21.65 0.28 -57.35 16 22 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 26 C -0.13 -3.92 7.39 31.12 0.23 -3.69 16 27 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.87 7.94 -2.39 -0.02 0.85 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.34 8.05 -2.39 -0.02 1.32 16 40 H 0.42 7.04 8.37 -92.71 -0.78 6.26 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 1.65 7.88 -2.39 -0.02 1.63 16 43 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.09 2.38 7.92 -2.39 -0.02 2.36 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 47 H 0.37 19.29 7.90 -92.71 -0.73 18.55 16 48 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 49 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 50 H 0.10 2.52 8.10 -2.39 -0.02 2.50 16 Total: -1.00 -67.12 409.68 2.80 -64.32 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.61 Total: 32.70 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 4.67 Total: -11.24 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -3.99 Total: -111.21 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.05 Total: -18.02 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.75 Total: -3.78 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -67.12 2.80 -64.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100868613.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.128 kcal (2) G-P(sol) polarization free energy of solvation -67.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds