Wall clock time and date at job start Tue Mar 31 2020 10:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47055 * 2 1 4 4 C 1.42904 * 114.00313 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47396 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47319 * 64.99884 * 5 4 3 7 7 C 1.42902 * 114.00186 * 180.02562 * 6 5 4 8 8 H 1.08993 * 109.46807 * 29.99983 * 7 6 5 9 9 C 1.53002 * 109.47072 * 269.99829 * 7 6 5 10 10 C 1.50700 * 109.47036 * 149.99828 * 7 6 5 11 11 O 1.21284 * 120.00340 * 4.99714 * 10 7 6 12 12 N 1.34783 * 119.99696 * 185.00262 * 10 7 6 13 13 C 1.46499 * 119.99738 * 179.97438 * 12 10 7 14 14 C 1.52998 * 109.46744 * 179.97438 * 13 12 10 15 15 C 1.53781 * 113.61736 * 274.13475 * 14 13 12 16 16 C 1.53954 * 87.01914 * 220.04922 * 15 14 13 17 17 N 1.46494 * 113.53924 * 270.81191 * 16 15 14 18 18 C 1.36940 * 120.00009 * 252.49607 * 17 16 15 19 19 H 1.08003 * 119.99880 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00168 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00103 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99683 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47238 * 89.99927 * 22 20 18 24 24 H 1.48495 * 109.47018 * 209.99614 * 22 20 18 25 25 H 1.48499 * 109.47295 * 329.99720 * 22 20 18 26 26 C 1.53783 * 113.61131 * 176.52646 * 14 13 12 27 27 H 1.08998 * 109.47516 * 59.99720 * 1 2 3 28 28 H 1.08999 * 109.46787 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47071 * 299.99890 * 1 2 3 30 30 H 1.08999 * 109.47215 * 240.00380 * 2 1 3 31 31 H 1.08998 * 109.47516 * 120.00280 * 2 1 3 32 32 H 1.09001 * 109.46993 * 59.99365 * 4 3 2 33 33 H 1.09004 * 109.46505 * 300.00140 * 4 3 2 34 34 H 1.09002 * 109.47153 * 304.99576 * 5 4 3 35 35 H 1.09001 * 109.46832 * 184.99767 * 5 4 3 36 36 H 1.08997 * 109.46833 * 300.00204 * 9 7 6 37 37 H 1.09001 * 109.46890 * 59.99978 * 9 7 6 38 38 H 1.09000 * 109.46986 * 179.97438 * 9 7 6 39 39 H 0.96996 * 119.99850 * 359.97438 * 12 10 7 40 40 H 1.08994 * 109.47275 * 299.99798 * 13 12 10 41 41 H 1.09003 * 109.46911 * 59.99688 * 13 12 10 42 42 H 1.08993 * 112.84878 * 45.33992 * 14 13 12 43 43 H 1.09000 * 113.61204 * 334.57370 * 15 14 13 44 44 H 1.09001 * 113.60824 * 105.47156 * 15 14 13 45 45 H 1.09010 * 113.73911 * 139.94378 * 16 15 14 46 46 H 0.97003 * 120.00135 * 72.50030 * 17 16 15 47 47 H 0.97004 * 119.99753 * 180.02562 * 21 20 18 48 48 H 1.08995 * 113.62128 * 254.53060 * 26 14 13 49 49 H 1.09008 * 113.61465 * 25.44183 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9384 0.0001 6 8 3.3986 3.5448 1.2217 7 6 3.7194 4.9335 1.3244 8 1 3.7307 5.3783 0.3294 9 6 5.0975 5.0923 1.9697 10 6 2.6845 5.6267 2.1727 11 8 1.8148 4.9802 2.7174 12 7 2.7254 6.9651 2.3261 13 6 1.7191 7.6390 3.1503 14 6 1.9918 9.1445 3.1587 15 6 3.0035 9.5814 4.2313 16 6 2.1019 10.8067 4.4678 17 7 2.4351 11.9513 3.6164 18 6 3.0464 13.0513 4.1564 19 1 3.2832 13.0748 5.2099 20 6 3.3627 14.1357 3.3496 21 7 3.9497 15.1932 3.8687 22 14 2.9538 14.0947 1.5273 23 1 1.5928 14.6488 1.3128 24 1 3.9438 14.9105 0.7794 25 1 2.9996 12.6923 1.0411 26 6 0.9384 9.9570 3.9300 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8333 0.9767 -0.8908 33 1 3.8340 0.9765 0.8892 34 1 3.3492 3.4419 -0.8412 35 1 4.9082 3.0255 -0.0899 36 1 5.0861 4.6474 2.9647 37 1 5.8460 4.5909 1.3561 38 1 5.3423 6.1516 2.0477 39 1 3.4212 7.4821 1.8907 40 1 0.7275 7.4514 2.7388 41 1 1.7681 7.2555 4.1694 42 1 2.2085 9.5409 2.1668 43 1 3.0542 8.9053 5.0848 44 1 3.9853 9.8316 3.8293 45 1 1.9958 11.0773 5.5184 46 1 2.2228 11.9301 2.6701 47 1 4.1704 15.9511 3.3049 48 1 0.2554 10.5101 3.2853 49 1 0.4235 9.3839 4.7011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101024858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:26 Heat of formation + Delta-G solvation = -101.195996 kcal Electronic energy + Delta-G solvation = -25968.738365 eV Core-core repulsion = 22125.151678 eV Total energy + Delta-G solvation = -3843.586687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.14112 -38.94654 -38.46039 -37.41849 -34.73439 -33.33537 -32.60394 -31.45960 -30.60410 -29.21297 -27.60194 -25.20027 -24.58247 -23.34600 -23.11087 -22.82255 -21.73171 -20.49980 -18.64399 -17.76333 -17.58682 -17.36459 -17.10661 -16.28799 -15.88376 -15.42970 -15.27077 -14.97520 -14.82496 -14.41081 -14.18235 -13.73736 -13.58443 -13.45593 -13.16533 -13.05553 -12.81711 -12.66358 -12.56127 -12.43233 -12.07264 -12.00729 -11.70560 -11.57751 -11.49972 -11.37894 -11.26583 -10.93861 -10.52369 -10.29772 -10.22208 -10.10066 -9.93724 -9.72494 -9.63106 -9.46268 -9.05235 -8.93299 -7.33188 -5.82614 -3.18807 2.56391 2.70558 3.30597 3.31405 3.34935 3.40624 3.62846 4.42343 4.52983 4.59705 4.63240 4.67603 4.73485 4.81091 4.84889 4.91182 4.93759 4.97856 5.00006 5.04014 5.08189 5.20855 5.34086 5.36929 5.37159 5.41213 5.42928 5.50236 5.59161 5.74286 5.77748 5.82317 5.86371 5.91618 6.11710 6.22041 6.33692 6.47618 6.60012 6.70686 6.75062 6.87434 6.89670 7.45498 7.95462 8.18441 8.37066 9.14892 9.87099 10.06389 11.35461 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.022984 B = 0.002066 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.940664 B =13550.216153 C =13824.766253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.066 3.934 5 C 0.060 3.940 6 O -0.348 6.348 7 C 0.070 3.930 8 H 0.085 0.915 9 C -0.171 4.171 10 C 0.511 3.489 11 O -0.520 6.520 12 N -0.724 5.724 13 C 0.133 3.867 14 C -0.123 4.123 15 C -0.166 4.166 16 C 0.172 3.828 17 N -0.730 5.730 18 C -0.247 4.247 19 H 0.092 0.908 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.148 4.148 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.401 0.599 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.362 0.638 47 H 0.260 0.740 48 H 0.067 0.933 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 -29.061 -9.599 30.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.298 6.298 4 C -0.011 4.011 5 C -0.017 4.017 6 O -0.266 6.266 7 C 0.008 3.992 8 H 0.103 0.897 9 C -0.229 4.229 10 C 0.296 3.704 11 O -0.395 6.395 12 N -0.378 5.378 13 C 0.010 3.990 14 C -0.142 4.142 15 C -0.207 4.207 16 C 0.060 3.940 17 N -0.370 5.370 18 C -0.377 4.377 19 H 0.110 0.890 20 C -0.190 4.190 21 N -0.579 5.579 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.188 4.188 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.195 0.805 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.784 -29.273 -8.889 30.603 hybrid contribution 0.544 0.207 -1.879 1.967 sum -0.240 -29.066 -10.768 30.997 Atomic orbital electron populations 1.21739 0.93652 1.02106 1.03441 1.22455 0.95861 0.83828 0.99784 1.88016 1.20252 1.26184 1.95337 1.22472 0.82537 0.95277 1.00813 1.22644 0.98377 0.92993 0.87638 1.88121 1.80648 1.20425 1.37401 1.21901 0.93831 0.84141 0.99280 0.89707 1.22245 0.94871 1.03226 1.02524 1.20329 0.85779 0.82340 0.81979 1.90728 1.36492 1.64986 1.47282 1.45990 1.32776 1.06660 1.52327 1.21464 0.91065 0.91585 0.94925 1.22751 0.99645 0.92112 0.99683 1.23881 0.98982 1.00354 0.97492 1.21048 0.91729 0.86032 0.95151 1.42515 1.72108 1.15524 1.06844 1.19119 1.30881 0.91893 0.95766 0.89021 1.24684 1.00594 0.96232 0.97540 1.69698 1.46788 1.06456 1.34946 0.86557 0.78002 0.77123 0.86837 1.21012 1.21700 1.20422 1.23459 0.97275 0.98344 0.99729 0.91910 0.91185 0.91532 0.93668 0.93391 0.91817 0.92334 0.92241 0.91556 0.90985 0.91314 0.90634 0.76504 0.91767 0.91358 0.89254 0.90923 0.91345 0.91029 0.80536 0.92986 0.91414 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.45 6.66 37.16 0.25 0.70 16 3 O -0.38 -4.17 10.31 -40.08 -0.41 -4.59 16 4 C 0.07 0.53 6.32 37.16 0.23 0.76 16 5 C 0.06 0.50 6.13 37.16 0.23 0.73 16 6 O -0.35 -4.23 9.49 -59.69 -0.57 -4.79 16 7 C 0.07 0.71 3.13 -27.88 -0.09 0.62 16 8 H 0.09 0.66 7.79 -51.93 -0.40 0.25 16 9 C -0.17 -1.35 9.48 37.16 0.35 -1.00 16 10 C 0.51 6.87 7.18 -10.98 -0.08 6.79 16 11 O -0.52 -9.40 16.51 -14.30 -0.24 -9.64 16 12 N -0.72 -8.40 5.52 -60.29 -0.33 -8.73 16 13 C 0.13 1.69 5.50 -4.04 -0.02 1.67 16 14 C -0.12 -1.68 3.62 -89.81 -0.33 -2.01 16 15 C -0.17 -2.56 7.44 -25.83 -0.19 -2.75 16 16 C 0.17 3.15 4.57 -67.03 -0.31 2.84 16 17 N -0.73 -16.59 5.11 -52.55 -0.27 -16.86 16 18 C -0.25 -6.79 10.45 -15.06 -0.16 -6.95 16 19 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 21 N -0.93 -28.76 13.97 55.49 0.78 -27.99 16 22 Si 0.88 21.54 27.74 -169.99 -4.71 16.82 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 26 C -0.15 -2.19 7.39 -25.92 -0.19 -2.38 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 38 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 39 H 0.40 3.76 8.26 -40.82 -0.34 3.42 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.35 8.10 -51.92 -0.42 0.93 16 46 H 0.36 8.05 5.76 -40.82 -0.24 7.82 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.08 1.06 8.10 -51.92 -0.42 0.64 16 LS Contribution 402.64 15.07 6.07 6.07 Total: -1.00 -35.31 402.64 -8.65 -43.96 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -8.95 Total: 7.38 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.01 Total: -1.64 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.17 Total: -53.58 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -1.22 Total: -19.02 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.82 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.31 -8.65 -43.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101024858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.232 kcal (2) G-P(sol) polarization free energy of solvation -35.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds