Wall clock time and date at job start Tue Mar 31 2020 10:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47055 * 2 1 4 4 C 1.42904 * 114.00313 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47396 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47319 * 64.99884 * 5 4 3 7 7 C 1.42902 * 114.00186 * 180.02562 * 6 5 4 8 8 H 1.08993 * 109.46807 * 29.99983 * 7 6 5 9 9 C 1.53002 * 109.47072 * 269.99829 * 7 6 5 10 10 C 1.50700 * 109.47036 * 149.99828 * 7 6 5 11 11 O 1.21284 * 120.00340 * 4.99714 * 10 7 6 12 12 N 1.34783 * 119.99696 * 185.00262 * 10 7 6 13 13 C 1.46499 * 119.99738 * 179.97438 * 12 10 7 14 14 C 1.52998 * 109.46744 * 179.97438 * 13 12 10 15 15 C 1.53781 * 113.61736 * 274.13475 * 14 13 12 16 16 C 1.53954 * 87.01914 * 220.04922 * 15 14 13 17 17 N 1.46494 * 113.53924 * 270.81191 * 16 15 14 18 18 C 1.36940 * 120.00009 * 252.49607 * 17 16 15 19 19 H 1.08003 * 119.99880 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00168 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00103 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99683 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47238 * 89.99927 * 22 20 18 24 24 H 1.48495 * 109.47018 * 209.99614 * 22 20 18 25 25 H 1.48499 * 109.47295 * 329.99720 * 22 20 18 26 26 C 1.53783 * 113.61131 * 176.52646 * 14 13 12 27 27 H 1.08998 * 109.47516 * 59.99720 * 1 2 3 28 28 H 1.08999 * 109.46787 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47071 * 299.99890 * 1 2 3 30 30 H 1.08999 * 109.47215 * 240.00380 * 2 1 3 31 31 H 1.08998 * 109.47516 * 120.00280 * 2 1 3 32 32 H 1.09001 * 109.46993 * 59.99365 * 4 3 2 33 33 H 1.09004 * 109.46505 * 300.00140 * 4 3 2 34 34 H 1.09002 * 109.47153 * 304.99576 * 5 4 3 35 35 H 1.09001 * 109.46832 * 184.99767 * 5 4 3 36 36 H 1.08997 * 109.46833 * 300.00204 * 9 7 6 37 37 H 1.09001 * 109.46890 * 59.99978 * 9 7 6 38 38 H 1.09000 * 109.46986 * 179.97438 * 9 7 6 39 39 H 0.96996 * 119.99850 * 359.97438 * 12 10 7 40 40 H 1.08994 * 109.47275 * 299.99798 * 13 12 10 41 41 H 1.09003 * 109.46911 * 59.99688 * 13 12 10 42 42 H 1.08993 * 112.84878 * 45.33992 * 14 13 12 43 43 H 1.09000 * 113.61204 * 334.57370 * 15 14 13 44 44 H 1.09001 * 113.60824 * 105.47156 * 15 14 13 45 45 H 1.09010 * 113.73911 * 139.94378 * 16 15 14 46 46 H 0.97003 * 120.00135 * 72.50030 * 17 16 15 47 47 H 0.97004 * 119.99753 * 180.02562 * 21 20 18 48 48 H 1.08995 * 113.62128 * 254.53060 * 26 14 13 49 49 H 1.09008 * 113.61465 * 25.44183 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9384 0.0001 6 8 3.3986 3.5448 1.2217 7 6 3.7194 4.9335 1.3244 8 1 3.7307 5.3783 0.3294 9 6 5.0975 5.0923 1.9697 10 6 2.6845 5.6267 2.1727 11 8 1.8148 4.9802 2.7174 12 7 2.7254 6.9651 2.3261 13 6 1.7191 7.6390 3.1503 14 6 1.9918 9.1445 3.1587 15 6 3.0035 9.5814 4.2313 16 6 2.1019 10.8067 4.4678 17 7 2.4351 11.9513 3.6164 18 6 3.0464 13.0513 4.1564 19 1 3.2832 13.0748 5.2099 20 6 3.3627 14.1357 3.3496 21 7 3.9497 15.1932 3.8687 22 14 2.9538 14.0947 1.5273 23 1 1.5928 14.6488 1.3128 24 1 3.9438 14.9105 0.7794 25 1 2.9996 12.6923 1.0411 26 6 0.9384 9.9570 3.9300 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8333 0.9767 -0.8908 33 1 3.8340 0.9765 0.8892 34 1 3.3492 3.4419 -0.8412 35 1 4.9082 3.0255 -0.0899 36 1 5.0861 4.6474 2.9647 37 1 5.8460 4.5909 1.3561 38 1 5.3423 6.1516 2.0477 39 1 3.4212 7.4821 1.8907 40 1 0.7275 7.4514 2.7388 41 1 1.7681 7.2555 4.1694 42 1 2.2085 9.5409 2.1668 43 1 3.0542 8.9053 5.0848 44 1 3.9853 9.8316 3.8293 45 1 1.9958 11.0773 5.5184 46 1 2.2228 11.9301 2.6701 47 1 4.1704 15.9511 3.3049 48 1 0.2554 10.5101 3.2853 49 1 0.4235 9.3839 4.7011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101024858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:26 Heat of formation + Delta-G solvation = -126.414327 kcal Electronic energy + Delta-G solvation = -25969.831914 eV Core-core repulsion = 22125.151678 eV Total energy + Delta-G solvation = -3844.680236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14457 -40.10317 -39.28591 -38.21488 -36.07254 -35.01668 -33.34645 -32.64933 -31.99298 -29.85963 -28.79056 -26.45563 -25.74831 -24.87808 -23.69458 -23.49728 -23.03442 -21.49686 -20.13139 -19.54829 -18.40437 -18.30836 -17.77310 -17.07560 -16.79121 -16.66964 -16.23401 -16.15486 -15.92201 -15.72814 -15.24803 -15.07835 -14.62850 -14.53244 -14.32077 -14.17066 -13.75223 -13.67920 -13.37151 -13.31351 -13.11587 -13.04768 -13.00963 -12.69864 -12.63999 -12.29061 -12.17590 -12.16186 -11.88679 -11.85960 -11.62614 -11.53440 -11.06731 -10.95882 -10.85522 -10.55655 -10.45468 -10.08864 -9.28562 -8.01624 -5.35342 1.38107 1.42806 1.49731 1.56827 1.86609 2.49163 2.75606 2.88721 3.28665 3.52228 3.61863 3.75240 3.84652 3.92954 4.01038 4.01871 4.11241 4.14552 4.23525 4.28109 4.31179 4.37804 4.45110 4.47843 4.50343 4.64345 4.69935 4.75074 4.78499 4.82021 4.87642 4.94054 4.97949 5.00862 5.09209 5.19696 5.23828 5.26678 5.32930 5.48732 5.55107 5.81902 6.06542 6.23507 6.31457 6.55466 7.08900 7.22013 7.85595 8.04585 9.19795 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.022984 B = 0.002066 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.940664 B =13550.216153 C =13824.766253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.415 6.415 4 C 0.059 3.941 5 C 0.054 3.946 6 O -0.384 6.384 7 C 0.071 3.929 8 H 0.113 0.887 9 C -0.165 4.165 10 C 0.506 3.494 11 O -0.575 6.575 12 N -0.713 5.713 13 C 0.139 3.861 14 C -0.103 4.103 15 C -0.153 4.153 16 C 0.145 3.855 17 N -0.733 5.733 18 C -0.233 4.233 19 H 0.056 0.944 20 C -0.065 4.065 21 N -0.984 5.984 22 Si 0.956 3.044 23 H -0.281 1.281 24 H -0.297 1.297 25 H -0.246 1.246 26 C -0.135 4.135 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.414 0.586 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.367 0.633 47 H 0.257 0.743 48 H 0.068 0.932 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 -31.144 -12.029 33.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.335 6.335 4 C -0.017 4.017 5 C -0.022 4.022 6 O -0.303 6.303 7 C 0.011 3.989 8 H 0.131 0.869 9 C -0.222 4.222 10 C 0.293 3.707 11 O -0.454 6.454 12 N -0.366 5.366 13 C 0.016 3.984 14 C -0.122 4.122 15 C -0.194 4.194 16 C 0.035 3.965 17 N -0.374 5.374 18 C -0.364 4.364 19 H 0.074 0.926 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.784 3.216 23 H -0.207 1.207 24 H -0.224 1.224 25 H -0.171 1.171 26 C -0.174 4.174 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.201 0.799 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.469 -31.406 -11.326 33.389 hybrid contribution 0.441 0.805 -0.991 1.350 sum -0.028 -30.602 -12.317 32.987 Atomic orbital electron populations 1.21774 0.93709 1.03248 1.02212 1.22624 0.95959 0.83011 1.00913 1.87972 1.22047 1.27900 1.95592 1.22704 0.81358 0.95625 1.02046 1.22917 1.00248 0.92769 0.86275 1.88085 1.81512 1.21361 1.39349 1.22014 0.93392 0.83499 1.00046 0.86902 1.22233 0.94005 1.04257 1.01751 1.21045 0.85668 0.82501 0.81504 1.90701 1.38846 1.66145 1.49687 1.45895 1.32635 1.06404 1.51670 1.21298 0.91362 0.90805 0.94970 1.22569 0.98010 0.92497 0.99118 1.23721 0.98166 0.98730 0.98736 1.21380 0.95025 0.85954 0.94096 1.42418 1.72060 1.15498 1.07465 1.19065 1.29663 0.93312 0.94321 0.92635 1.25529 1.01357 0.95911 1.02873 1.69891 1.49171 1.07525 1.36874 0.85393 0.77288 0.78607 0.80363 1.20730 1.22400 1.17064 1.23366 0.96366 0.97474 1.00184 0.92295 0.88891 0.93526 0.91539 0.93128 0.88872 0.92644 0.92082 0.88382 0.92804 0.88959 0.89294 0.74899 0.91976 0.91825 0.88929 0.89271 0.92506 0.92500 0.79924 0.93374 0.91358 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.41 -8.90 10.31 -144.35 -1.49 -10.39 16 4 C 0.06 0.85 6.32 71.98 0.45 1.31 16 5 C 0.05 0.77 6.13 71.98 0.44 1.21 16 6 O -0.38 -8.86 9.49 -125.59 -1.19 -10.05 16 7 C 0.07 1.30 3.13 29.85 0.09 1.39 16 8 H 0.11 1.37 7.79 -2.39 -0.02 1.35 16 9 C -0.16 -2.15 9.48 71.98 0.68 -1.47 16 10 C 0.51 12.92 7.18 87.66 0.63 13.55 16 11 O -0.58 -20.78 16.51 15.95 0.26 -20.51 16 12 N -0.71 -14.85 5.52 -463.06 -2.55 -17.41 16 13 C 0.14 3.23 5.50 86.38 0.47 3.71 16 14 C -0.10 -2.52 3.62 -10.27 -0.04 -2.56 16 15 C -0.15 -4.40 7.44 31.18 0.23 -4.17 16 16 C 0.14 5.13 4.57 45.58 0.21 5.34 16 17 N -0.73 -32.55 5.11 -320.16 -1.64 -34.19 16 18 C -0.23 -12.98 10.45 84.03 0.88 -12.10 16 19 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 20 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 21 N -0.98 -62.43 13.97 21.65 0.30 -62.13 16 22 Si 0.96 44.09 27.74 68.60 1.90 45.99 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.25 -9.94 6.52 99.48 0.65 -9.29 16 26 C -0.13 -3.63 7.39 31.12 0.23 -3.40 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 35 H 0.10 0.73 7.87 -2.39 -0.02 0.71 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.78 7.87 -2.39 -0.02 0.76 16 38 H 0.09 0.91 7.92 -2.39 -0.02 0.89 16 39 H 0.41 6.42 8.26 -92.71 -0.77 5.65 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.06 1.58 7.87 -2.39 -0.02 1.56 16 42 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.09 2.29 7.92 -2.39 -0.02 2.27 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 2.16 8.10 -2.38 -0.02 2.14 16 46 H 0.37 15.44 5.76 -92.71 -0.53 14.91 16 47 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 48 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.10 2.39 8.10 -2.38 -0.02 2.37 16 Total: -1.00 -79.89 402.64 1.14 -78.75 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.44 Total: 30.63 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 5.97 Total: -0.71 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -3.89 Total: -113.72 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -2.42 Total: -40.95 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.90 Total: 45.99 kcal Total: -79.89 1.14 -78.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101024858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.661 kcal (2) G-P(sol) polarization free energy of solvation -79.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds