Wall clock time and date at job start Tue Mar 31 2020 11:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47066 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47626 * 304.99761 * 5 4 3 7 7 F 1.39904 * 109.47411 * 65.00047 * 5 4 3 8 8 C 1.50703 * 109.46899 * 184.99785 * 5 4 3 9 9 O 1.21285 * 120.00056 * 10.00128 * 8 5 4 10 10 N 1.34777 * 120.00173 * 189.99632 * 8 5 4 11 11 C 1.46503 * 120.00144 * 179.97438 * 10 8 5 12 12 C 1.52998 * 109.46929 * 180.02562 * 11 10 8 13 13 H 1.08998 * 110.64392 * 54.30332 * 12 11 10 14 14 C 1.54322 * 110.72173 * 291.16072 * 12 11 10 15 15 N 1.47026 * 107.27080 * 219.44329 * 14 12 11 16 16 C 1.36938 * 125.64984 * 178.97601 * 15 14 12 17 17 H 1.08002 * 119.99622 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99990 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99633 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99680 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47303 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46720 * 119.99816 * 20 18 16 23 23 H 1.48497 * 109.46895 * 239.99349 * 20 18 16 24 24 C 1.47426 * 108.70315 * 358.94418 * 15 14 12 25 25 C 1.55128 * 104.94409 * 24.00185 * 24 15 14 26 26 H 1.08998 * 110.93769 * 81.21345 * 25 24 15 27 27 C 1.52995 * 111.16085 * 205.13293 * 25 24 15 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 34 34 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 35 35 H 1.08996 * 109.46698 * 300.00222 * 4 3 2 36 36 H 1.09002 * 109.46838 * 59.99718 * 4 3 2 37 37 H 1.09002 * 109.47073 * 60.00183 * 6 5 4 38 38 H 1.09001 * 109.47644 * 180.02562 * 6 5 4 39 39 H 1.09000 * 109.47074 * 300.00361 * 6 5 4 40 40 H 0.97000 * 119.99618 * 0.02562 * 10 8 5 41 41 H 1.08997 * 109.47499 * 300.00614 * 11 10 8 42 42 H 1.09005 * 109.46777 * 60.00254 * 11 10 8 43 43 H 1.08996 * 109.88315 * 338.86045 * 14 12 11 44 44 H 1.08999 * 109.88128 * 100.03112 * 14 12 11 45 45 H 0.96999 * 119.99329 * 179.97438 * 19 18 16 46 46 H 1.09000 * 110.37212 * 142.96192 * 24 15 14 47 47 H 1.08997 * 110.36542 * 265.29029 * 24 15 14 48 48 H 1.09005 * 109.46733 * 172.16597 * 27 25 24 49 49 H 1.09001 * 109.47424 * 292.16722 * 27 25 24 50 50 H 1.09003 * 109.47307 * 52.17353 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 3.4694 3.6424 -1.1809 7 9 3.7103 3.5098 1.1960 8 6 5.5818 2.8869 -0.1244 9 8 6.1699 1.8592 -0.3868 10 7 6.2715 4.0307 0.0558 11 6 7.7316 4.0325 -0.0646 12 6 8.2622 5.4456 0.1854 13 1 7.9062 5.8260 1.1428 14 6 7.8560 6.3925 -0.9635 15 7 9.0024 7.2741 -1.2285 16 6 9.0554 8.2471 -2.1906 17 1 8.2048 8.4169 -2.8342 18 6 10.2026 9.0143 -2.3395 19 7 11.2393 8.8069 -1.5555 20 14 10.2750 10.3411 -3.6524 21 1 8.9898 10.3728 -4.3955 22 1 10.5093 11.6598 -3.0111 23 1 11.3839 10.0450 -4.5947 24 6 10.0853 6.9376 -0.2863 25 6 9.8126 5.4678 0.1281 26 1 10.1857 4.7749 -0.6260 27 6 10.4165 5.1595 1.4996 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9337 0.9286 0.8891 36 1 3.9330 0.9288 -0.8909 37 1 2.3831 3.6410 -1.0909 38 1 3.8331 4.6700 -1.1807 39 1 3.7574 3.1556 -2.1127 40 1 5.8012 4.8526 0.2660 41 1 8.1576 3.3495 0.6703 42 1 8.0138 3.7099 -1.0668 43 1 7.6202 5.8128 -1.8559 44 1 6.9923 6.9870 -0.6660 45 1 12.0411 9.3428 -1.6597 46 1 11.0549 7.0205 -0.7773 47 1 10.0443 7.5887 0.5868 48 1 10.0930 4.1708 1.8251 49 1 11.5042 5.1816 1.4310 50 1 10.0826 5.9065 2.2199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102105207.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:48 Heat of formation + Delta-G solvation = -110.431753 kcal Electronic energy + Delta-G solvation = -27039.074782 eV Core-core repulsion = 23207.460392 eV Total energy + Delta-G solvation = -3831.614390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.97534 -40.98560 -39.61700 -37.14897 -36.12895 -34.73413 -33.85149 -32.57154 -30.95680 -29.53669 -27.90499 -26.96167 -26.22774 -24.67343 -23.36173 -21.95598 -21.51183 -21.28400 -20.56938 -19.03950 -18.65249 -17.50385 -17.17637 -17.00866 -16.43275 -16.18518 -16.08072 -15.77326 -15.47640 -15.32305 -14.70181 -14.58536 -14.35218 -14.15016 -14.04399 -13.77425 -13.63042 -13.54527 -13.40758 -13.18178 -13.10715 -13.03240 -12.78125 -12.69266 -12.49731 -12.24087 -12.13241 -11.96884 -11.94382 -11.85110 -11.64174 -11.59583 -11.42997 -11.38886 -11.25003 -10.78326 -10.72120 -10.21388 -8.88478 -7.77757 -5.22172 1.31473 1.46144 1.46878 1.57137 1.91039 2.48686 3.22921 3.31483 3.42772 3.44201 3.61515 3.71111 3.79080 3.86560 3.95134 4.11908 4.14265 4.30232 4.35163 4.47161 4.48900 4.59589 4.61155 4.72597 4.73435 4.75811 4.82096 4.83020 4.84394 4.93316 4.95571 5.05641 5.07912 5.11384 5.13186 5.16661 5.28542 5.33079 5.36755 5.39211 5.41437 5.49780 5.50279 5.71012 5.83955 6.30844 6.33241 6.96553 7.10867 7.78409 8.42057 9.23986 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.002587 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.254164 B =10822.276814 C =11720.133399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.122 4.122 5 C 0.111 3.889 6 C -0.175 4.175 7 F -0.199 7.199 8 C 0.495 3.505 9 O -0.561 6.561 10 N -0.708 5.708 11 C 0.142 3.858 12 C -0.091 4.091 13 H 0.092 0.908 14 C 0.138 3.862 15 N -0.629 5.629 16 C -0.237 4.237 17 H 0.080 0.920 18 C -0.069 4.069 19 N -0.948 5.948 20 Si 0.980 3.020 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.162 3.838 25 C -0.101 4.101 26 H 0.067 0.933 27 C -0.128 4.128 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.413 0.587 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.023 0.977 44 H 0.028 0.972 45 H 0.246 0.754 46 H 0.069 0.931 47 H -0.010 1.010 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.715 -15.140 5.148 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.160 4.160 5 C 0.089 3.911 6 C -0.232 4.232 7 F -0.179 7.179 8 C 0.279 3.721 9 O -0.440 6.440 10 N -0.359 5.359 11 C 0.019 3.981 12 C -0.110 4.110 13 H 0.111 0.889 14 C 0.013 3.987 15 N -0.354 5.354 16 C -0.366 4.366 17 H 0.098 0.902 18 C -0.262 4.262 19 N -0.598 5.598 20 Si 0.808 3.192 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.037 3.963 25 C -0.121 4.121 26 H 0.086 0.914 27 C -0.185 4.185 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.249 0.751 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.041 0.959 44 H 0.046 0.954 45 H 0.056 0.944 46 H 0.087 0.913 47 H 0.007 0.993 48 H 0.092 0.908 49 H 0.074 0.926 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.181 -15.685 4.903 24.507 hybrid contribution 0.421 1.463 -0.429 1.581 sum -17.760 -14.222 4.474 23.188 Atomic orbital electron populations 1.21767 0.95022 1.02014 1.02117 1.21510 0.96518 0.96052 1.02162 1.21698 0.92433 0.98071 1.03325 1.21965 0.97636 0.91986 1.04440 1.21246 0.89731 0.96324 0.83768 1.22503 1.03914 1.00876 0.95928 1.92900 1.92380 1.84288 1.48352 1.21306 0.90554 0.83436 0.76763 1.90707 1.71199 1.32989 1.49087 1.46021 1.08081 1.11648 1.70119 1.21277 0.78976 0.96194 1.01667 1.22335 0.96228 0.93488 0.98945 0.88945 1.21500 0.90307 0.91434 0.95473 1.44816 1.13177 1.39336 1.38119 1.19480 0.99373 1.08931 1.08773 0.90166 1.25645 0.96226 1.02431 1.01881 1.70067 1.04965 1.43041 1.41745 0.84986 0.77643 0.78304 0.78263 1.19077 1.21941 1.21915 1.21799 0.93897 0.90112 0.90478 1.22475 0.93655 0.97557 0.98387 0.91422 1.21604 1.00674 1.01699 0.94557 0.92652 0.92351 0.92251 0.92323 0.91756 0.89978 0.91491 0.91411 0.89447 0.87693 0.90524 0.89547 0.75079 0.90514 0.92305 0.95882 0.95438 0.94376 0.91270 0.99253 0.90846 0.92604 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.50 5.93 30.59 0.18 -1.32 16 3 C -0.12 -1.53 4.64 30.59 0.14 -1.39 16 4 C -0.12 -2.16 4.02 30.59 0.12 -2.03 16 5 C 0.11 2.15 1.20 -11.54 -0.01 2.13 16 6 C -0.17 -2.57 8.42 71.98 0.61 -1.97 16 7 F -0.20 -4.14 16.42 44.97 0.74 -3.40 16 8 C 0.49 12.68 6.79 87.66 0.60 13.27 16 9 O -0.56 -18.01 15.87 -3.05 -0.05 -18.06 16 10 N -0.71 -17.34 5.40 -463.04 -2.50 -19.85 16 11 C 0.14 3.95 5.00 86.38 0.43 4.38 16 12 C -0.09 -2.86 2.45 -9.60 -0.02 -2.88 16 13 H 0.09 2.69 8.04 -2.39 -0.02 2.67 16 14 C 0.14 5.42 6.64 86.73 0.58 6.00 16 15 N -0.63 -32.10 3.40 -691.54 -2.35 -34.44 16 16 C -0.24 -13.22 10.27 84.03 0.86 -12.36 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 19 N -0.95 -56.57 10.09 21.65 0.22 -56.36 16 20 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.16 7.89 5.37 86.93 0.47 8.36 16 25 C -0.10 -3.61 3.10 -9.32 -0.03 -3.64 16 26 H 0.07 2.49 8.05 -2.39 -0.02 2.47 16 27 C -0.13 -3.70 9.31 71.98 0.67 -3.03 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.87 6.35 -2.39 -0.02 0.85 16 34 H 0.07 0.91 7.94 -2.39 -0.02 0.89 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.62 7.81 -2.39 -0.02 1.61 16 37 H 0.10 1.13 6.35 -2.39 -0.02 1.11 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.41 8.80 8.37 -92.71 -0.78 8.02 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 1.82 8.01 -2.38 -0.02 1.80 16 43 H 0.02 0.92 7.73 -2.39 -0.02 0.90 16 44 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 46 H 0.07 3.90 5.87 -2.39 -0.01 3.89 16 47 H -0.01 -0.55 7.98 -2.39 -0.02 -0.57 16 48 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 49 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.05 1.55 8.08 -2.39 -0.02 1.53 16 Total: -1.00 -67.96 395.01 3.98 -63.98 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.12 Total: 19.21 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.77 Total: 1.23 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -4.63 Total: -110.65 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.05 Total: -18.06 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.74 Total: -3.40 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -67.96 3.98 -63.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102105207.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.448 kcal (2) G-P(sol) polarization free energy of solvation -67.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds