Wall clock time and date at job start Tue Mar 31 2020 10:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.46808 * 2 1 4 4 C 1.42904 * 113.99912 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47221 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.46728 * 65.00652 * 5 4 3 7 7 C 1.42899 * 113.99778 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46785 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00221 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99728 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99794 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47090 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.88179 * 51.11928 * 12 11 10 14 14 C 1.54913 * 111.00444 * 287.19896 * 12 11 10 15 15 N 1.47416 * 104.82903 * 204.91420 * 14 12 11 16 16 C 1.36940 * 125.64809 * 204.08035 * 15 14 12 17 17 H 1.08001 * 120.00264 * 0.03045 * 16 15 14 18 18 C 1.38813 * 120.00341 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99743 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00272 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47345 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47204 * 119.99580 * 20 18 16 23 23 H 1.48500 * 109.47229 * 239.99893 * 20 18 16 24 24 C 1.47018 * 108.70697 * 24.12829 * 15 14 12 25 25 C 1.54324 * 107.27055 * 358.94036 * 24 15 14 26 26 H 1.08998 * 110.71790 * 96.17043 * 25 24 15 27 27 C 1.52998 * 110.87088 * 219.37247 * 25 24 15 28 28 H 1.08999 * 109.47233 * 59.99981 * 1 2 3 29 29 H 1.09008 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47111 * 299.99856 * 1 2 3 31 31 H 1.09001 * 109.47111 * 240.00144 * 2 1 3 32 32 H 1.08999 * 109.47233 * 120.00019 * 2 1 3 33 33 H 1.09000 * 109.46865 * 60.00255 * 4 3 2 34 34 H 1.08994 * 109.47229 * 300.00235 * 4 3 2 35 35 H 1.09000 * 109.47486 * 305.00590 * 5 4 3 36 36 H 1.09001 * 109.47362 * 184.99867 * 5 4 3 37 37 H 1.08997 * 109.47171 * 299.99768 * 7 6 5 38 38 H 1.08997 * 109.47442 * 59.99964 * 7 6 5 39 39 H 0.96996 * 119.99888 * 0.02562 * 10 8 7 40 40 H 1.08997 * 109.47293 * 300.00234 * 11 10 8 41 41 H 1.08997 * 109.46878 * 60.00159 * 11 10 8 42 42 H 1.08994 * 110.36511 * 323.75264 * 14 12 11 43 43 H 1.09002 * 110.36496 * 86.07682 * 14 12 11 44 44 H 0.96998 * 119.99908 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.88360 * 239.51804 * 24 15 14 46 46 H 1.09006 * 109.88242 * 118.35721 * 24 15 14 47 47 H 1.09000 * 109.47024 * 173.61101 * 27 25 24 48 48 H 1.08997 * 109.47310 * 293.60771 * 27 25 24 49 49 H 1.09000 * 109.47217 * 53.61232 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 8 3.3975 3.5461 1.2205 7 6 3.7192 4.9347 1.3224 8 6 3.2237 5.4696 2.6413 9 8 2.6511 4.7342 3.4173 10 7 3.4170 6.7652 2.9584 11 6 2.9348 7.2853 4.2403 12 6 3.2793 8.7721 4.3495 13 1 2.9472 9.3139 3.4639 14 6 4.7964 8.9744 4.5887 15 7 4.9011 10.2816 5.2622 16 6 6.0043 11.0930 5.2628 17 1 6.8977 10.7901 4.7370 18 6 5.9741 12.3049 5.9389 19 7 4.8851 12.6744 6.5792 20 14 7.4786 13.4121 5.9391 21 1 8.5637 12.7729 5.1522 22 1 7.1301 14.7210 5.3302 23 1 7.9384 13.6223 7.3354 24 6 3.6256 10.5693 5.9341 25 6 2.6756 9.3896 5.6384 26 1 2.6906 8.6682 6.4553 27 6 1.2512 9.8872 5.3844 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8892 34 1 3.8333 0.9768 0.8907 35 1 3.3498 3.4410 -0.8424 36 1 4.9082 3.0255 -0.0892 37 1 4.7999 5.0628 1.2609 38 1 3.2419 5.4790 0.5076 39 1 3.8746 7.3534 2.3375 40 1 1.8541 7.1578 4.3008 41 1 3.4112 6.7408 5.0555 42 1 5.1879 8.1848 5.2300 43 1 5.3311 8.9930 3.6390 44 1 4.8642 13.5211 7.0520 45 1 3.2011 11.4941 5.5434 46 1 3.7843 10.6570 7.0090 47 1 0.6259 9.0526 5.0676 48 1 0.8473 10.3163 6.3013 49 1 1.2658 10.6473 4.6032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102602045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:35 Heat of formation + Delta-G solvation = -113.136475 kcal Electronic energy + Delta-G solvation = -26048.001493 eV Core-core repulsion = 22203.897028 eV Total energy + Delta-G solvation = -3844.104465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.80345 -38.66195 -38.02342 -37.21732 -34.61209 -32.94684 -32.20195 -30.73388 -30.24244 -29.33314 -27.38754 -25.87313 -24.83955 -23.09410 -22.90193 -22.70639 -20.71966 -20.00496 -19.19999 -17.48459 -17.27518 -17.21685 -16.69616 -16.19343 -16.15733 -15.47868 -15.19107 -14.79518 -14.66877 -14.22647 -13.83057 -13.67083 -13.57278 -13.27991 -12.94934 -12.82141 -12.61591 -12.51192 -12.30560 -11.81361 -11.77406 -11.65053 -11.58693 -11.38711 -11.27829 -11.20475 -10.82140 -10.78161 -10.16086 -9.99120 -9.98179 -9.96528 -9.91104 -9.88364 -9.64959 -9.50216 -8.93653 -8.61004 -6.83168 -5.71726 -3.05215 2.66110 2.75461 3.33464 3.38748 3.44090 3.46678 3.81644 4.48394 4.58870 4.70766 4.75118 4.80272 4.89229 4.93517 4.98919 5.03214 5.06882 5.09308 5.12723 5.22765 5.32839 5.34343 5.44052 5.53381 5.57516 5.60575 5.77497 5.82764 5.88596 6.03763 6.12307 6.19835 6.29923 6.45385 6.49763 6.57538 6.63334 6.73766 6.79222 6.92043 6.95368 7.55759 7.57000 7.65040 7.83978 8.25776 8.27974 9.21747 9.82131 10.48399 11.39894 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.025775 B = 0.002039 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.061282 B =13729.261264 C =14615.353579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.062 3.938 6 O -0.355 6.355 7 C 0.043 3.957 8 C 0.511 3.489 9 O -0.523 6.523 10 N -0.724 5.724 11 C 0.135 3.865 12 C -0.112 4.112 13 H 0.080 0.920 14 C 0.142 3.858 15 N -0.607 5.607 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.184 3.816 25 C -0.111 4.111 26 H 0.067 0.933 27 C -0.134 4.134 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.401 0.599 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.019 0.981 43 H 0.035 0.965 44 H 0.251 0.749 45 H 0.049 0.951 46 H 0.041 0.959 47 H 0.045 0.955 48 H 0.053 0.947 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.308 -20.250 -15.134 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.011 4.011 5 C -0.015 4.015 6 O -0.273 6.273 7 C -0.037 4.037 8 C 0.296 3.704 9 O -0.398 6.398 10 N -0.377 5.377 11 C 0.011 3.989 12 C -0.132 4.132 13 H 0.099 0.901 14 C 0.015 3.985 15 N -0.333 5.333 16 C -0.356 4.356 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.059 3.941 25 C -0.131 4.131 26 H 0.086 0.914 27 C -0.192 4.192 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.236 0.764 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.037 0.963 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.880 -20.527 -14.319 25.709 hybrid contribution 1.415 0.887 -0.476 1.736 sum -4.465 -19.639 -14.794 24.990 Atomic orbital electron populations 1.21740 0.93682 1.02131 1.03363 1.22457 0.95813 0.83838 0.99854 1.87989 1.20379 1.26226 1.95362 1.22484 0.82408 0.95359 1.00898 1.22594 0.98443 0.92857 0.87631 1.88089 1.80709 1.20804 1.37659 1.22217 1.00603 0.84451 0.96411 1.20171 0.80012 0.82247 0.87991 1.90729 1.40890 1.57116 1.51063 1.45960 1.60428 1.09995 1.21361 1.21401 0.99185 0.93882 0.84410 1.22678 0.98390 0.92724 0.99435 0.90123 1.21587 0.92117 0.89290 0.95477 1.44473 1.12017 1.17173 1.59617 1.19096 0.90910 0.97963 1.27652 0.90453 1.24809 0.97611 0.98010 1.00115 1.69974 1.26304 1.22608 1.37959 0.86051 0.81877 0.80579 0.77280 1.20558 1.21783 1.21775 1.21219 0.83483 0.92455 0.96937 1.22442 0.95583 0.99395 0.95655 0.91414 1.21691 0.95729 1.00232 1.01529 0.91939 0.91186 0.91553 0.93654 0.93330 0.91781 0.92238 0.92198 0.91504 0.90236 0.90264 0.76439 0.91586 0.91340 0.96322 0.94634 0.93811 0.93297 0.94052 0.93626 0.92764 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.45 6.66 37.16 0.25 0.70 16 3 O -0.38 -4.16 10.31 -40.08 -0.41 -4.57 16 4 C 0.07 0.54 6.32 37.16 0.23 0.78 16 5 C 0.06 0.52 6.32 37.16 0.23 0.75 16 6 O -0.35 -4.48 9.84 -59.73 -0.59 -5.07 16 7 C 0.04 0.44 6.42 36.01 0.23 0.67 16 8 C 0.51 7.17 7.91 -10.98 -0.09 7.09 16 9 O -0.52 -9.83 16.50 -14.35 -0.24 -10.06 16 10 N -0.72 -9.12 5.50 -60.29 -0.33 -9.45 16 11 C 0.13 1.97 5.13 -4.04 -0.02 1.95 16 12 C -0.11 -1.84 2.49 -88.47 -0.22 -2.06 16 13 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 14 C 0.14 2.80 6.65 -2.53 -0.02 2.78 16 15 N -0.61 -15.23 3.39 -170.08 -0.58 -15.81 16 16 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -26.93 10.31 55.49 0.57 -26.36 16 20 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C 0.18 4.38 4.97 -3.07 -0.02 4.37 16 25 C -0.11 -2.01 3.01 -88.79 -0.27 -2.28 16 26 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 27 C -0.13 -2.10 9.17 37.16 0.34 -1.76 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 40 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 41 H 0.07 1.09 7.96 -51.93 -0.41 0.68 16 42 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.05 1.29 7.02 -51.93 -0.36 0.92 16 46 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 47 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 LS Contribution 399.00 15.07 6.01 6.01 Total: -1.00 -35.25 399.00 -8.85 -44.10 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -9.06 Total: -1.23 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 0.79 Total: 5.49 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.34 Total: -51.61 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -1.24 Total: -19.71 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.25 -8.85 -44.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102602045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.036 kcal (2) G-P(sol) polarization free energy of solvation -35.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds