Wall clock time and date at job start Tue Mar 31 2020 10:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.46808 * 2 1 4 4 C 1.42904 * 113.99912 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47221 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.46728 * 65.00652 * 5 4 3 7 7 C 1.42899 * 113.99778 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46785 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00221 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99728 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99794 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47090 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.88179 * 51.11928 * 12 11 10 14 14 C 1.54913 * 111.00444 * 287.19896 * 12 11 10 15 15 N 1.47416 * 104.82903 * 204.91420 * 14 12 11 16 16 C 1.36940 * 125.64809 * 204.08035 * 15 14 12 17 17 H 1.08001 * 120.00264 * 0.03045 * 16 15 14 18 18 C 1.38813 * 120.00341 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99743 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00272 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47345 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47204 * 119.99580 * 20 18 16 23 23 H 1.48500 * 109.47229 * 239.99893 * 20 18 16 24 24 C 1.47018 * 108.70697 * 24.12829 * 15 14 12 25 25 C 1.54324 * 107.27055 * 358.94036 * 24 15 14 26 26 H 1.08998 * 110.71790 * 96.17043 * 25 24 15 27 27 C 1.52998 * 110.87088 * 219.37247 * 25 24 15 28 28 H 1.08999 * 109.47233 * 59.99981 * 1 2 3 29 29 H 1.09008 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47111 * 299.99856 * 1 2 3 31 31 H 1.09001 * 109.47111 * 240.00144 * 2 1 3 32 32 H 1.08999 * 109.47233 * 120.00019 * 2 1 3 33 33 H 1.09000 * 109.46865 * 60.00255 * 4 3 2 34 34 H 1.08994 * 109.47229 * 300.00235 * 4 3 2 35 35 H 1.09000 * 109.47486 * 305.00590 * 5 4 3 36 36 H 1.09001 * 109.47362 * 184.99867 * 5 4 3 37 37 H 1.08997 * 109.47171 * 299.99768 * 7 6 5 38 38 H 1.08997 * 109.47442 * 59.99964 * 7 6 5 39 39 H 0.96996 * 119.99888 * 0.02562 * 10 8 7 40 40 H 1.08997 * 109.47293 * 300.00234 * 11 10 8 41 41 H 1.08997 * 109.46878 * 60.00159 * 11 10 8 42 42 H 1.08994 * 110.36511 * 323.75264 * 14 12 11 43 43 H 1.09002 * 110.36496 * 86.07682 * 14 12 11 44 44 H 0.96998 * 119.99908 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.88360 * 239.51804 * 24 15 14 46 46 H 1.09006 * 109.88242 * 118.35721 * 24 15 14 47 47 H 1.09000 * 109.47024 * 173.61101 * 27 25 24 48 48 H 1.08997 * 109.47310 * 293.60771 * 27 25 24 49 49 H 1.09000 * 109.47217 * 53.61232 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 8 3.3975 3.5461 1.2205 7 6 3.7192 4.9347 1.3224 8 6 3.2237 5.4696 2.6413 9 8 2.6511 4.7342 3.4173 10 7 3.4170 6.7652 2.9584 11 6 2.9348 7.2853 4.2403 12 6 3.2793 8.7721 4.3495 13 1 2.9472 9.3139 3.4639 14 6 4.7964 8.9744 4.5887 15 7 4.9011 10.2816 5.2622 16 6 6.0043 11.0930 5.2628 17 1 6.8977 10.7901 4.7370 18 6 5.9741 12.3049 5.9389 19 7 4.8851 12.6744 6.5792 20 14 7.4786 13.4121 5.9391 21 1 8.5637 12.7729 5.1522 22 1 7.1301 14.7210 5.3302 23 1 7.9384 13.6223 7.3354 24 6 3.6256 10.5693 5.9341 25 6 2.6756 9.3896 5.6384 26 1 2.6906 8.6682 6.4553 27 6 1.2512 9.8872 5.3844 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8892 34 1 3.8333 0.9768 0.8907 35 1 3.3498 3.4410 -0.8424 36 1 4.9082 3.0255 -0.0892 37 1 4.7999 5.0628 1.2609 38 1 3.2419 5.4790 0.5076 39 1 3.8746 7.3534 2.3375 40 1 1.8541 7.1578 4.3008 41 1 3.4112 6.7408 5.0555 42 1 5.1879 8.1848 5.2300 43 1 5.3311 8.9930 3.6390 44 1 4.8642 13.5211 7.0520 45 1 3.2011 11.4941 5.5434 46 1 3.7843 10.6570 7.0090 47 1 0.6259 9.0526 5.0676 48 1 0.8473 10.3163 6.3013 49 1 1.2658 10.6473 4.6032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102602045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:34 Heat of formation + Delta-G solvation = -137.642146 kcal Electronic energy + Delta-G solvation = -26049.064138 eV Core-core repulsion = 22203.897028 eV Total energy + Delta-G solvation = -3845.167111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.90461 -39.69084 -39.21265 -38.05231 -36.01911 -34.66907 -32.80612 -32.53577 -31.33622 -30.29621 -28.49237 -27.64640 -26.30197 -24.33864 -23.67332 -23.48681 -21.93449 -21.59198 -20.68849 -18.88250 -18.21950 -18.13018 -17.90052 -17.12779 -17.02108 -16.72857 -16.31249 -16.06486 -15.78364 -15.53598 -15.45842 -14.76493 -14.62643 -14.40450 -14.22106 -14.13358 -13.54781 -13.44101 -13.40251 -13.24724 -13.10128 -12.91520 -12.83210 -12.67714 -12.40356 -12.36878 -12.18593 -11.90688 -11.87748 -11.82970 -11.55639 -11.39858 -11.35450 -10.80339 -10.69975 -10.67727 -10.53331 -10.07801 -8.88047 -7.83586 -5.19079 1.46403 1.47410 1.57534 1.61343 1.85650 2.50123 2.77588 3.02301 3.34578 3.62278 3.70844 3.87068 3.95453 3.96835 4.09375 4.16310 4.23609 4.27324 4.34141 4.36514 4.39152 4.49031 4.51042 4.52765 4.55945 4.61272 4.74955 4.76040 4.83075 4.86942 4.90736 4.98585 5.03432 5.09781 5.16713 5.26244 5.34874 5.39064 5.48943 5.50030 5.72671 5.82925 6.08014 6.21590 6.32541 6.59234 7.11775 7.25912 7.79622 8.44281 9.26892 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.025775 B = 0.002039 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.061282 B =13729.261264 C =14615.353579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.413 6.413 4 C 0.058 3.942 5 C 0.056 3.944 6 O -0.396 6.396 7 C 0.047 3.953 8 C 0.508 3.492 9 O -0.578 6.578 10 N -0.712 5.712 11 C 0.146 3.854 12 C -0.089 4.089 13 H 0.093 0.907 14 C 0.137 3.863 15 N -0.629 5.629 16 C -0.239 4.239 17 H 0.085 0.915 18 C -0.070 4.070 19 N -0.952 5.952 20 Si 0.978 3.022 21 H -0.264 1.264 22 H -0.292 1.292 23 H -0.296 1.296 24 C 0.193 3.807 25 C -0.103 4.103 26 H 0.071 0.929 27 C -0.127 4.127 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.417 0.583 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.016 0.984 43 H 0.053 0.947 44 H 0.245 0.755 45 H 0.017 0.983 46 H -0.002 1.002 47 H 0.074 0.926 48 H 0.053 0.947 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -21.444 -17.678 28.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.333 6.333 4 C -0.018 4.018 5 C -0.020 4.020 6 O -0.315 6.315 7 C -0.032 4.032 8 C 0.295 3.705 9 O -0.457 6.457 10 N -0.366 5.366 11 C 0.022 3.978 12 C -0.108 4.108 13 H 0.111 0.889 14 C 0.012 3.988 15 N -0.355 5.355 16 C -0.368 4.368 17 H 0.103 0.897 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.219 1.219 23 H -0.223 1.223 24 C 0.067 3.933 25 C -0.123 4.123 26 H 0.090 0.910 27 C -0.185 4.185 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.254 0.746 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.055 0.945 45 H 0.035 0.965 46 H 0.016 0.984 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.191 -21.734 -16.915 28.026 hybrid contribution 1.240 1.204 0.310 1.756 sum -3.951 -20.529 -16.605 26.698 Atomic orbital electron populations 1.21771 0.93508 1.03256 1.02344 1.22630 0.96096 0.83049 1.00820 1.87946 1.21944 1.27843 1.95584 1.22707 0.81394 0.95846 1.01889 1.22859 1.00202 0.92532 0.86369 1.88040 1.81641 1.21954 1.39836 1.22321 1.02510 0.83901 0.94513 1.20933 0.78843 0.81878 0.88891 1.90707 1.43496 1.58457 1.53059 1.45815 1.59962 1.10090 1.20752 1.21124 0.99404 0.92103 0.85204 1.22465 0.95534 0.94013 0.98817 0.88901 1.21776 0.94765 0.86707 0.95547 1.44804 1.11779 1.18738 1.60204 1.19520 0.91979 0.98340 1.26982 0.89729 1.25669 1.00450 0.99722 1.00400 1.70203 1.28246 1.22676 1.38986 0.85011 0.78973 0.78454 0.76901 1.18776 1.21906 1.22312 1.20965 0.84458 0.93752 0.94080 1.22324 0.95892 0.97218 0.96870 0.91010 1.21635 0.94185 1.01119 1.01536 0.92051 0.89029 0.93401 0.91542 0.93404 0.88779 0.93123 0.91269 0.88669 0.87072 0.87386 0.74646 0.91058 0.92670 0.96616 0.92889 0.94526 0.96466 0.98393 0.90719 0.92822 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.41 -8.70 10.31 -144.35 -1.49 -10.19 16 4 C 0.06 0.87 6.32 71.98 0.45 1.32 16 5 C 0.06 0.81 6.32 71.98 0.45 1.26 16 6 O -0.40 -9.33 9.84 -125.56 -1.24 -10.57 16 7 C 0.05 0.82 6.42 71.24 0.46 1.28 16 8 C 0.51 13.31 7.91 87.66 0.69 14.00 16 9 O -0.58 -21.50 16.50 16.02 0.26 -21.24 16 10 N -0.71 -16.11 5.50 -463.06 -2.55 -18.66 16 11 C 0.15 3.98 5.13 86.38 0.44 4.42 16 12 C -0.09 -2.75 2.49 -9.40 -0.02 -2.77 16 13 H 0.09 2.71 8.05 -2.39 -0.02 2.69 16 14 C 0.14 5.25 6.65 86.86 0.58 5.83 16 15 N -0.63 -31.84 3.39 -692.00 -2.35 -34.19 16 16 C -0.24 -13.26 10.28 84.03 0.86 -12.40 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 19 N -0.95 -57.58 10.31 21.65 0.22 -57.36 16 20 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 C 0.19 9.47 4.97 86.73 0.43 9.90 16 25 C -0.10 -3.69 3.01 -9.61 -0.03 -3.72 16 26 H 0.07 2.52 8.04 -2.39 -0.02 2.50 16 27 C -0.13 -3.80 9.17 71.98 0.66 -3.14 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.42 6.96 8.47 -92.71 -0.79 6.18 16 40 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 41 H 0.05 1.69 7.96 -2.39 -0.02 1.67 16 42 H 0.02 0.63 7.91 -2.39 -0.02 0.61 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 45 H 0.02 0.94 7.02 -2.39 -0.02 0.92 16 46 H 0.00 -0.12 7.51 -2.38 -0.02 -0.14 16 47 H 0.07 1.82 8.08 -2.39 -0.02 1.80 16 48 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.05 1.55 8.07 -2.39 -0.02 1.53 16 Total: -1.00 -80.13 399.00 1.68 -78.45 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.12 Total: 13.72 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.67 Total: 12.37 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -4.67 Total: -110.21 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -2.46 Total: -42.00 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -80.13 1.68 -78.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102602045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.193 kcal (2) G-P(sol) polarization free energy of solvation -80.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds