Wall clock time and date at job start Tue Mar 31 2020 11:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46780 * 2 1 4 4 C 1.53007 * 109.46780 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47135 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47281 * 59.99454 * 5 4 3 7 7 F 1.39907 * 109.46792 * 299.99869 * 5 4 3 8 8 C 1.50697 * 109.47247 * 179.97438 * 5 4 3 9 9 O 1.21278 * 120.00023 * 353.67690 * 8 5 4 10 10 N 1.34775 * 120.00322 * 173.67637 * 8 5 4 11 11 C 1.48127 * 127.03174 * 354.83079 * 10 8 5 12 12 C 1.54937 * 103.25217 * 219.55545 * 11 10 8 13 13 H 1.08998 * 110.74329 * 80.96410 * 12 11 10 14 14 C 1.53003 * 110.89372 * 204.21208 * 12 11 10 15 15 N 1.46508 * 109.47099 * 288.51149 * 14 12 11 16 16 C 1.36935 * 119.99619 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00344 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99351 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00312 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99811 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47018 * 89.99555 * 20 18 16 22 22 H 1.48498 * 109.47520 * 209.99911 * 20 18 16 23 23 H 1.48504 * 109.47294 * 329.99907 * 20 18 16 24 24 C 1.54611 * 102.84293 * 322.62234 * 12 11 10 25 25 H 1.09007 * 110.32716 * 262.96426 * 24 12 11 26 26 C 1.52997 * 110.41967 * 140.78719 * 24 12 11 27 27 C 1.47483 * 127.03958 * 175.14657 * 10 8 5 28 28 H 1.09002 * 109.46891 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47413 * 300.00421 * 1 2 3 30 30 H 1.09005 * 109.46985 * 60.00309 * 1 2 3 31 31 H 1.09000 * 109.46904 * 239.99655 * 2 1 3 32 32 H 1.09000 * 109.46530 * 119.99711 * 2 1 3 33 33 H 1.09000 * 109.47683 * 60.00132 * 3 2 1 34 34 H 1.09000 * 109.47353 * 299.99207 * 3 2 1 35 35 H 1.08994 * 109.47027 * 60.00107 * 4 3 2 36 36 H 1.09000 * 109.46530 * 299.99711 * 4 3 2 37 37 H 1.09001 * 109.46864 * 174.14822 * 6 5 4 38 38 H 1.08993 * 109.47201 * 294.15027 * 6 5 4 39 39 H 1.08997 * 109.46901 * 54.15547 * 6 5 4 40 40 H 1.09001 * 110.65802 * 337.99605 * 11 10 8 41 41 H 1.08994 * 110.66287 * 101.11384 * 11 10 8 42 42 H 1.08996 * 109.47058 * 48.50661 * 14 12 11 43 43 H 1.08999 * 109.47344 * 168.51240 * 14 12 11 44 44 H 0.97003 * 119.99876 * 359.97438 * 15 14 12 45 45 H 0.97000 * 120.00283 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.46686 * 302.88047 * 26 24 12 47 47 H 1.09002 * 109.46727 * 62.87381 * 26 24 12 48 48 H 1.08991 * 109.47467 * 182.87244 * 26 24 12 49 49 H 1.09000 * 109.91292 * 273.65687 * 27 10 8 50 50 H 1.09003 * 109.90847 * 34.73512 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 3.5705 3.6056 1.2498 7 9 3.6132 3.5451 -1.1418 8 6 5.5870 2.8850 0.0000 9 8 6.1934 1.8411 0.1152 10 7 6.2609 4.0451 -0.1280 11 6 5.6871 5.3867 -0.3833 12 6 6.6926 6.0197 -1.3777 13 1 6.5030 5.6711 -2.3928 14 6 6.6363 7.5473 -1.3123 15 7 5.3847 8.0160 -1.9125 16 6 5.1115 9.3567 -1.9670 17 1 5.8184 10.0685 -1.5672 18 6 3.9258 9.8008 -2.5362 19 7 3.0646 8.9333 -3.0239 20 14 3.5527 11.6296 -2.6099 21 1 4.0826 12.1922 -3.8781 22 1 2.0836 11.8380 -2.5516 23 1 4.1956 12.3129 -1.4587 24 6 8.0557 5.4997 -0.8659 25 1 8.5316 6.2467 -0.2305 26 6 8.9676 5.1451 -2.0421 27 6 7.7210 4.2378 -0.0491 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9336 0.9286 0.8892 37 1 4.0169 4.5985 1.3041 38 1 2.4856 3.6972 1.1994 39 1 3.8461 3.0344 2.1363 40 1 4.6993 5.3026 -0.8363 41 1 5.6406 5.9668 0.5383 42 1 6.6828 7.8684 -0.2718 43 1 7.4808 7.9658 -1.8598 44 1 4.7496 7.3766 -2.2713 45 1 2.2359 9.2435 -3.4213 46 1 8.4742 4.4070 -2.6746 47 1 9.1745 6.0427 -2.6249 48 1 9.9035 4.7330 -1.6651 49 1 8.0215 4.3770 0.9894 50 1 8.2329 3.3726 -0.4706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106340307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:19 Heat of formation + Delta-G solvation = -97.050346 kcal Electronic energy + Delta-G solvation = -27747.804711 eV Core-core repulsion = 23916.770583 eV Total energy + Delta-G solvation = -3831.034129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.90124 -40.09372 -38.15818 -36.18779 -34.62224 -33.33935 -32.63693 -31.41692 -29.03752 -28.97779 -26.77699 -25.63694 -25.16323 -23.33731 -22.40540 -21.20099 -20.67946 -19.84676 -19.33882 -17.39345 -16.94418 -16.51014 -16.18835 -15.72455 -15.27564 -15.08371 -14.55711 -14.24423 -14.05873 -13.87354 -13.70903 -13.41399 -13.34716 -13.14309 -12.97063 -12.87348 -12.65012 -12.44448 -12.32819 -12.23786 -11.90454 -11.87174 -11.48834 -11.35496 -11.22203 -11.18599 -11.11117 -10.86768 -10.77783 -10.64059 -10.56498 -10.45246 -10.34410 -10.03412 -9.69674 -9.66056 -8.89150 -8.67606 -6.93727 -5.76613 -3.06009 2.40923 2.81861 3.43098 3.48301 3.49928 4.11571 4.29149 4.39134 4.54540 4.62495 4.69030 4.75250 4.84773 4.91804 4.92361 5.00277 5.23632 5.29663 5.40198 5.45037 5.49016 5.54346 5.57109 5.57408 5.60139 5.63891 5.67356 5.77472 5.81662 5.83320 5.85885 5.88750 5.95373 6.00033 6.02697 6.10443 6.13801 6.15494 6.21321 6.23915 6.35198 6.44402 6.69862 6.82578 7.47098 7.69257 7.97553 8.41423 9.52926 10.09739 10.44448 11.45828 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010799 B = 0.003859 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.108313 B = 7253.148271 C = 9407.628904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.125 4.125 4 C -0.122 4.122 5 C 0.111 3.889 6 C -0.177 4.177 7 F -0.185 7.185 8 C 0.519 3.481 9 O -0.536 6.536 10 N -0.610 5.610 11 C 0.097 3.903 12 C -0.100 4.100 13 H 0.085 0.915 14 C 0.165 3.835 15 N -0.733 5.733 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.100 4.100 25 H 0.088 0.912 26 C -0.141 4.141 27 C 0.109 3.891 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.066 0.934 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 -15.576 8.552 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.162 4.162 4 C -0.160 4.160 5 C 0.090 3.910 6 C -0.234 4.234 7 F -0.165 7.165 8 C 0.306 3.694 9 O -0.413 6.413 10 N -0.342 5.342 11 C -0.025 4.025 12 C -0.120 4.120 13 H 0.103 0.897 14 C 0.037 3.963 15 N -0.377 5.377 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.120 4.120 25 H 0.106 0.894 26 C -0.198 4.198 27 C -0.014 4.014 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.039 0.961 43 H 0.042 0.958 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.125 -16.025 8.626 18.465 hybrid contribution -0.455 1.020 -0.316 1.161 sum 2.671 -15.005 8.310 17.359 Atomic orbital electron populations 1.21779 0.95781 1.01468 1.02020 1.21495 0.95896 0.96541 1.02068 1.21701 0.93952 0.97398 1.03155 1.21964 0.96375 0.92824 1.04845 1.21115 0.90157 0.94684 0.85066 1.22479 1.03649 1.01694 0.95595 1.92930 1.89454 1.82166 1.51991 1.20483 0.89475 0.82522 0.76951 1.90691 1.69664 1.30626 1.50341 1.48856 1.08209 1.07778 1.69355 1.22963 0.99377 0.80784 0.99384 1.22561 0.92783 0.97330 0.99321 0.89673 1.20630 0.90579 0.88781 0.96328 1.42374 1.18513 1.05200 1.71611 1.19197 1.01830 0.83628 1.32581 0.91218 1.24736 0.97167 0.97525 1.01398 1.69657 1.10702 1.32395 1.45142 0.86216 0.77206 0.85210 0.77691 1.21755 1.21777 1.20794 1.22101 0.96496 0.96125 0.97278 0.89405 1.21824 0.98605 1.01873 0.97525 1.22169 0.80683 0.98513 0.99995 0.92887 0.92727 0.92560 0.91948 0.92043 0.91324 0.90977 0.90246 0.89494 0.90429 0.89589 0.90328 0.88299 0.90434 0.96078 0.95834 0.78180 0.93487 0.92634 0.91842 0.92740 0.91590 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.12 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.12 -1.23 4.74 -26.73 -0.13 -1.36 16 4 C -0.12 -1.40 3.85 -26.73 -0.10 -1.50 16 5 C 0.11 1.47 0.87 -91.77 -0.08 1.39 16 6 C -0.18 -1.96 8.32 37.16 0.31 -1.65 16 7 F -0.18 -2.90 14.15 2.25 0.03 -2.86 16 8 C 0.52 7.89 6.91 -10.99 -0.08 7.81 16 9 O -0.54 -9.25 16.29 5.56 0.09 -9.16 16 10 N -0.61 -8.81 3.28 -169.76 -0.56 -9.37 16 11 C 0.10 1.47 4.76 -2.13 -0.01 1.46 16 12 C -0.10 -1.57 2.62 -88.75 -0.23 -1.80 16 13 H 0.08 1.46 7.86 -51.93 -0.41 1.05 16 14 C 0.16 3.12 5.58 -4.04 -0.02 3.10 16 15 N -0.73 -17.89 5.52 -59.90 -0.33 -18.22 16 16 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 20 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.10 -1.25 3.17 -89.25 -0.28 -1.53 16 25 H 0.09 1.01 7.85 -51.92 -0.41 0.60 16 26 C -0.14 -1.61 8.90 37.16 0.33 -1.28 16 27 C 0.11 1.39 6.64 -2.98 -0.02 1.37 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 34 H 0.07 0.79 7.80 -51.93 -0.41 0.39 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.94 8.03 -51.93 -0.42 0.53 16 37 H 0.08 0.92 6.40 -51.93 -0.33 0.58 16 38 H 0.09 0.86 6.76 -51.93 -0.35 0.51 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 1.67 5.87 -51.93 -0.31 1.37 16 41 H 0.08 1.14 7.79 -51.93 -0.40 0.73 16 42 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.38 9.96 7.67 -40.82 -0.31 9.65 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.08 1.00 7.55 -51.93 -0.39 0.61 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -31.17 392.86 -8.61 -39.77 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -9.11 Total: 7.09 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.35 Total: -3.22 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.16 Total: -54.61 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.03 Total: -2.86 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.17 -8.61 -39.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106340307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.280 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds