Wall clock time and date at job start Tue Mar 31 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46780 * 2 1 4 4 C 1.53007 * 109.46780 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47135 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47281 * 59.99454 * 5 4 3 7 7 F 1.39907 * 109.46792 * 299.99869 * 5 4 3 8 8 C 1.50697 * 109.47247 * 179.97438 * 5 4 3 9 9 O 1.21278 * 120.00023 * 353.67690 * 8 5 4 10 10 N 1.34775 * 120.00322 * 173.67637 * 8 5 4 11 11 C 1.48127 * 127.03174 * 354.83079 * 10 8 5 12 12 C 1.54937 * 103.25217 * 219.55545 * 11 10 8 13 13 H 1.08998 * 110.74329 * 80.96410 * 12 11 10 14 14 C 1.53003 * 110.89372 * 204.21208 * 12 11 10 15 15 N 1.46508 * 109.47099 * 288.51149 * 14 12 11 16 16 C 1.36935 * 119.99619 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00344 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99351 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00312 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99811 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47018 * 89.99555 * 20 18 16 22 22 H 1.48498 * 109.47520 * 209.99911 * 20 18 16 23 23 H 1.48504 * 109.47294 * 329.99907 * 20 18 16 24 24 C 1.54611 * 102.84293 * 322.62234 * 12 11 10 25 25 H 1.09007 * 110.32716 * 262.96426 * 24 12 11 26 26 C 1.52997 * 110.41967 * 140.78719 * 24 12 11 27 27 C 1.47483 * 127.03958 * 175.14657 * 10 8 5 28 28 H 1.09002 * 109.46891 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47413 * 300.00421 * 1 2 3 30 30 H 1.09005 * 109.46985 * 60.00309 * 1 2 3 31 31 H 1.09000 * 109.46904 * 239.99655 * 2 1 3 32 32 H 1.09000 * 109.46530 * 119.99711 * 2 1 3 33 33 H 1.09000 * 109.47683 * 60.00132 * 3 2 1 34 34 H 1.09000 * 109.47353 * 299.99207 * 3 2 1 35 35 H 1.08994 * 109.47027 * 60.00107 * 4 3 2 36 36 H 1.09000 * 109.46530 * 299.99711 * 4 3 2 37 37 H 1.09001 * 109.46864 * 174.14822 * 6 5 4 38 38 H 1.08993 * 109.47201 * 294.15027 * 6 5 4 39 39 H 1.08997 * 109.46901 * 54.15547 * 6 5 4 40 40 H 1.09001 * 110.65802 * 337.99605 * 11 10 8 41 41 H 1.08994 * 110.66287 * 101.11384 * 11 10 8 42 42 H 1.08996 * 109.47058 * 48.50661 * 14 12 11 43 43 H 1.08999 * 109.47344 * 168.51240 * 14 12 11 44 44 H 0.97003 * 119.99876 * 359.97438 * 15 14 12 45 45 H 0.97000 * 120.00283 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.46686 * 302.88047 * 26 24 12 47 47 H 1.09002 * 109.46727 * 62.87381 * 26 24 12 48 48 H 1.08991 * 109.47467 * 182.87244 * 26 24 12 49 49 H 1.09000 * 109.91292 * 273.65687 * 27 10 8 50 50 H 1.09003 * 109.90847 * 34.73512 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 3.5705 3.6056 1.2498 7 9 3.6132 3.5451 -1.1418 8 6 5.5870 2.8850 0.0000 9 8 6.1934 1.8411 0.1152 10 7 6.2609 4.0451 -0.1280 11 6 5.6871 5.3867 -0.3833 12 6 6.6926 6.0197 -1.3777 13 1 6.5030 5.6711 -2.3928 14 6 6.6363 7.5473 -1.3123 15 7 5.3847 8.0160 -1.9125 16 6 5.1115 9.3567 -1.9670 17 1 5.8184 10.0685 -1.5672 18 6 3.9258 9.8008 -2.5362 19 7 3.0646 8.9333 -3.0239 20 14 3.5527 11.6296 -2.6099 21 1 4.0826 12.1922 -3.8781 22 1 2.0836 11.8380 -2.5516 23 1 4.1956 12.3129 -1.4587 24 6 8.0557 5.4997 -0.8659 25 1 8.5316 6.2467 -0.2305 26 6 8.9676 5.1451 -2.0421 27 6 7.7210 4.2378 -0.0491 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9336 0.9286 0.8892 37 1 4.0169 4.5985 1.3041 38 1 2.4856 3.6972 1.1994 39 1 3.8461 3.0344 2.1363 40 1 4.6993 5.3026 -0.8363 41 1 5.6406 5.9668 0.5383 42 1 6.6828 7.8684 -0.2718 43 1 7.4808 7.9658 -1.8598 44 1 4.7496 7.3766 -2.2713 45 1 2.2359 9.2435 -3.4213 46 1 8.4742 4.4070 -2.6746 47 1 9.1745 6.0427 -2.6249 48 1 9.9035 4.7330 -1.6651 49 1 8.0215 4.3770 0.9894 50 1 8.2329 3.3726 -0.4706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106340307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:18 Heat of formation + Delta-G solvation = -114.306681 kcal Electronic energy + Delta-G solvation = -27748.553002 eV Core-core repulsion = 23916.770583 eV Total energy + Delta-G solvation = -3831.782419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.06326 -41.28218 -39.37361 -37.06471 -36.39237 -34.46136 -33.74885 -33.06206 -30.60922 -29.81477 -27.81406 -27.08092 -26.24630 -24.96536 -23.47569 -22.38272 -21.65736 -21.02949 -20.48904 -19.07964 -18.38484 -17.69943 -17.28848 -16.86505 -16.45851 -16.22557 -16.10636 -15.54564 -15.32472 -15.11218 -14.89007 -14.76148 -14.58752 -14.24266 -14.12658 -13.88239 -13.72955 -13.63117 -13.25867 -13.21387 -13.18097 -13.03453 -12.91311 -12.73529 -12.47105 -12.30079 -12.14772 -12.11438 -12.00178 -11.92762 -11.76671 -11.63009 -11.54182 -11.43663 -11.40968 -10.93248 -10.82474 -9.85812 -8.95845 -7.90630 -5.19537 1.21426 1.50214 1.51318 1.59678 1.69879 2.58897 2.98271 3.34186 3.41757 3.42121 3.49139 3.60021 3.69797 3.79413 4.09050 4.09446 4.14302 4.21244 4.27312 4.36484 4.45562 4.51211 4.53675 4.56040 4.63868 4.69441 4.76274 4.77240 4.79379 4.82874 4.83801 4.91308 4.96374 5.03220 5.03734 5.07757 5.12502 5.18031 5.24539 5.28839 5.30349 5.38266 5.47710 5.48468 5.54826 6.27556 6.30635 6.79021 7.37532 8.13018 8.35610 9.32585 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010799 B = 0.003859 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.108313 B = 7253.148271 C = 9407.628904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.120 4.120 4 C -0.116 4.116 5 C 0.105 3.895 6 C -0.173 4.173 7 F -0.203 7.203 8 C 0.514 3.486 9 O -0.559 6.559 10 N -0.609 5.609 11 C 0.105 3.895 12 C -0.095 4.095 13 H 0.064 0.936 14 C 0.167 3.833 15 N -0.745 5.745 16 C -0.242 4.242 17 H 0.078 0.922 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.970 3.030 21 H -0.290 1.290 22 H -0.297 1.297 23 H -0.268 1.268 24 C -0.089 4.089 25 H 0.108 0.892 26 C -0.138 4.138 27 C 0.106 3.894 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.033 0.967 43 H 0.028 0.972 44 H 0.373 0.627 45 H 0.250 0.750 46 H 0.042 0.958 47 H 0.060 0.940 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 -15.422 10.201 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.157 4.157 4 C -0.154 4.154 5 C 0.084 3.916 6 C -0.230 4.230 7 F -0.184 7.184 8 C 0.301 3.699 9 O -0.438 6.438 10 N -0.341 5.341 11 C -0.017 4.017 12 C -0.114 4.114 13 H 0.083 0.917 14 C 0.040 3.960 15 N -0.388 5.388 16 C -0.374 4.374 17 H 0.096 0.904 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.799 3.201 21 H -0.217 1.217 22 H -0.224 1.224 23 H -0.193 1.193 24 C -0.109 4.109 25 H 0.126 0.874 26 C -0.196 4.196 27 C -0.015 4.015 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.205 0.795 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.096 0.904 49 H 0.105 0.895 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.151 -15.861 10.296 19.360 hybrid contribution -0.670 0.942 -0.825 1.421 sum 3.481 -14.918 9.471 18.010 Atomic orbital electron populations 1.21778 0.95147 1.02124 1.01961 1.21490 0.96429 0.95550 1.02390 1.21678 0.92715 0.98387 1.02968 1.21943 0.97394 0.91534 1.04547 1.21369 0.89130 0.95875 0.85263 1.22487 1.04173 1.01197 0.95135 1.92896 1.89552 1.82667 1.53248 1.20838 0.90284 0.82269 0.76473 1.90672 1.70326 1.31250 1.51600 1.48901 1.09065 1.07305 1.68816 1.22798 0.98255 0.81289 0.99400 1.22396 0.95259 0.95193 0.98579 0.91705 1.20763 0.88223 0.90801 0.96218 1.42592 1.20092 1.04243 1.71882 1.19615 1.01600 0.85062 1.31089 0.90433 1.25527 0.97458 1.01577 1.02098 1.69819 1.11069 1.34194 1.46783 0.85192 0.76475 0.80501 0.77899 1.21722 1.22405 1.19257 1.22082 0.94698 0.96303 0.97774 0.87422 1.21809 0.99280 1.01533 0.96947 1.22333 0.79543 0.98404 1.01265 0.91898 0.92191 0.93234 0.92378 0.90995 0.90090 0.92550 0.91713 0.88555 0.91291 0.88562 0.88331 0.90415 0.89501 0.94904 0.95456 0.79518 0.94134 0.93913 0.92079 0.90377 0.89493 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 71.98 0.71 -1.52 16 2 C -0.12 -1.96 5.93 30.60 0.18 -1.78 16 3 C -0.12 -2.30 4.74 30.60 0.15 -2.16 16 4 C -0.12 -2.63 3.85 30.60 0.12 -2.51 16 5 C 0.10 2.76 0.87 -11.54 -0.01 2.75 16 6 C -0.17 -3.65 8.32 71.98 0.60 -3.05 16 7 F -0.20 -6.58 14.15 44.97 0.64 -5.94 16 8 C 0.51 15.45 6.91 87.66 0.61 16.06 16 9 O -0.56 -19.07 16.29 -3.02 -0.05 -19.12 16 10 N -0.61 -17.15 3.28 -809.40 -2.66 -19.81 16 11 C 0.10 3.14 4.76 86.73 0.41 3.56 16 12 C -0.09 -2.90 2.62 -9.58 -0.03 -2.92 16 13 H 0.06 2.26 7.86 -2.39 -0.02 2.24 16 14 C 0.17 6.13 5.58 86.38 0.48 6.61 16 15 N -0.75 -36.50 5.52 -343.44 -1.90 -38.40 16 16 C -0.24 -13.12 9.99 84.03 0.84 -12.28 16 17 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 18 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 19 N -0.97 -58.75 13.06 21.65 0.28 -58.46 16 20 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 C -0.09 -2.04 3.17 -9.91 -0.03 -2.07 16 25 H 0.11 2.10 7.85 -2.38 -0.02 2.08 16 26 C -0.14 -2.92 8.90 71.98 0.64 -2.28 16 27 C 0.11 2.50 6.64 86.53 0.57 3.07 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.34 6.56 -2.39 -0.02 1.33 16 34 H 0.06 1.26 7.80 -2.39 -0.02 1.24 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.99 8.03 -2.39 -0.02 1.97 16 37 H 0.07 1.57 6.40 -2.39 -0.02 1.56 16 38 H 0.10 1.82 6.76 -2.39 -0.02 1.81 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 2.70 5.87 -2.39 -0.01 2.69 16 41 H 0.09 2.45 7.79 -2.39 -0.02 2.43 16 42 H 0.03 1.16 8.00 -2.39 -0.02 1.14 16 43 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.37 19.80 7.67 -92.71 -0.71 19.09 16 45 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 46 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 49 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.07 1.82 7.55 -2.39 -0.02 1.80 16 Total: -1.00 -66.78 392.86 4.25 -62.53 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.19 Total: 33.98 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 5.71 Total: -2.24 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -4.27 Total: -116.67 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.12 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.64 Total: -5.94 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -66.78 4.25 -62.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106340307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.779 kcal (2) G-P(sol) polarization free energy of solvation -66.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds