Wall clock time and date at job start Tue Mar 31 2020 10:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99468 * 2 1 4 4 C 1.53003 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46813 * 55.00048 * 4 3 2 6 6 O 1.42902 * 109.47110 * 295.00624 * 4 3 2 7 7 C 1.42896 * 114.00088 * 150.00002 * 6 4 3 8 8 C 1.50689 * 109.47152 * 175.00103 * 4 3 2 9 9 O 1.21287 * 120.00177 * 115.00404 * 8 4 3 10 10 N 1.34772 * 120.00367 * 295.00007 * 8 4 3 11 11 C 1.46501 * 120.00156 * 179.97438 * 10 8 4 12 12 C 1.53003 * 109.46803 * 176.62311 * 11 10 8 13 13 N 1.46499 * 109.47377 * 54.63316 * 12 11 10 14 14 C 1.36936 * 120.00004 * 62.83270 * 13 12 11 15 15 H 1.08005 * 120.00083 * 354.25730 * 14 13 12 16 16 C 1.38816 * 119.99802 * 173.97031 * 14 13 12 17 17 N 1.31611 * 120.00060 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99803 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47420 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47242 * 120.00377 * 18 16 14 21 21 H 1.48501 * 109.47207 * 240.00573 * 18 16 14 22 22 C 1.53005 * 109.46945 * 174.63064 * 12 11 10 23 23 C 1.53001 * 109.47149 * 180.02562 * 22 12 11 24 24 C 1.52997 * 109.46954 * 299.99640 * 23 22 12 25 25 C 1.53005 * 109.46899 * 60.00206 * 24 23 22 26 26 C 1.52996 * 109.47383 * 299.99882 * 25 24 23 27 27 H 1.08994 * 109.47652 * 59.99833 * 1 2 3 28 28 H 1.09004 * 109.46812 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46558 * 299.98916 * 1 2 3 30 30 H 1.08999 * 109.46703 * 60.00620 * 3 2 1 31 31 H 1.08997 * 109.47249 * 300.00421 * 3 2 1 32 32 H 1.08999 * 109.47003 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.46934 * 299.99554 * 7 6 4 34 34 H 1.08993 * 109.47243 * 59.99533 * 7 6 4 35 35 H 0.96999 * 119.99947 * 0.02562 * 10 8 4 36 36 H 1.08992 * 109.47066 * 56.62811 * 11 10 8 37 37 H 1.08991 * 109.47479 * 296.62556 * 11 10 8 38 38 H 0.96995 * 119.99919 * 242.83938 * 13 12 11 39 39 H 0.97000 * 119.99938 * 179.97438 * 17 16 14 40 40 H 1.09006 * 109.47053 * 299.99717 * 22 12 11 41 41 H 1.08997 * 109.47078 * 59.99850 * 22 12 11 42 42 H 1.08996 * 109.47050 * 179.97438 * 23 22 12 43 43 H 1.09000 * 109.47365 * 60.00286 * 23 22 12 44 44 H 1.08997 * 109.47132 * 300.00391 * 24 23 22 45 45 H 1.09001 * 109.47153 * 179.97438 * 24 23 22 46 46 H 1.08999 * 109.46713 * 179.97438 * 25 24 23 47 47 H 1.08997 * 109.47078 * 60.00152 * 25 24 23 48 48 H 1.09008 * 109.46908 * 300.00540 * 26 25 24 49 49 H 1.08996 * 109.47284 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 1 3.8507 0.5687 -0.8427 6 8 3.9659 0.5793 1.2201 7 6 5.1691 -0.1818 1.0986 8 6 4.1478 2.5561 -0.1244 9 8 4.8068 3.0106 0.7867 10 7 3.9633 3.2777 -1.2477 11 6 4.5582 4.6111 -1.3678 12 6 4.2701 5.1744 -2.7608 13 7 2.8267 5.1467 -3.0100 14 6 1.9822 5.8866 -2.2261 15 1 2.3678 6.4169 -1.3678 16 6 0.6315 5.9600 -2.5381 17 7 0.1626 5.3180 -3.5869 18 14 -0.5203 6.9700 -1.4692 19 1 0.2490 7.5897 -0.3605 20 1 -1.1505 8.0353 -2.2897 21 1 -1.5752 6.0884 -0.9078 22 6 4.7739 6.6169 -2.8418 23 6 4.4852 7.1805 -4.2347 24 6 5.2004 6.3307 -5.2869 25 6 4.6966 4.8883 -5.2059 26 6 4.9852 4.3247 -3.8131 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 1.6886 1.8463 0.8901 31 1 1.6885 1.8465 -0.8899 32 1 5.4288 -0.6080 2.0677 33 1 5.0199 -0.9846 0.3766 34 1 5.9766 0.4667 0.7591 35 1 3.4360 2.9145 -1.9763 36 1 5.6357 4.5429 -1.2192 37 1 4.1284 5.2700 -0.6134 38 1 2.4692 4.6040 -3.7301 39 1 -0.7813 5.3690 -3.8046 40 1 4.2640 7.2225 -2.0924 41 1 5.8477 6.6376 -2.6564 42 1 4.8437 8.2082 -4.2922 43 1 3.4112 7.1599 -4.4196 44 1 6.2744 6.3514 -5.1019 45 1 4.9944 6.7319 -6.2792 46 1 5.2058 4.2830 -5.9558 47 1 3.6227 4.8676 -5.3909 48 1 6.0592 4.3454 -3.6281 49 1 4.6267 3.2969 -3.7556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115718493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:02 Heat of formation + Delta-G solvation = -128.591931 kcal Electronic energy + Delta-G solvation = -28589.727441 eV Core-core repulsion = 24744.952777 eV Total energy + Delta-G solvation = -3844.774664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.94338 -38.80868 -37.64947 -36.83169 -34.45996 -33.34392 -31.58728 -30.51696 -30.24363 -28.55994 -26.74827 -26.29987 -25.09401 -23.83520 -23.25689 -22.11601 -20.54937 -19.94150 -18.40876 -17.52547 -17.13615 -16.96514 -16.30352 -15.60634 -15.39892 -15.16304 -14.91905 -14.69519 -14.35821 -14.12747 -13.97955 -13.85142 -13.61628 -13.27845 -12.93385 -12.77862 -12.28698 -12.14461 -11.92925 -11.74869 -11.69835 -11.59469 -11.31764 -11.16211 -10.95846 -10.93360 -10.80644 -10.57490 -10.39176 -10.18246 -10.07049 -9.83551 -9.66690 -9.63017 -9.35797 -9.10628 -8.90724 -8.50540 -7.06238 -5.86032 -3.14929 2.79246 3.36574 3.37735 3.45337 3.46097 3.80254 4.02869 4.51904 4.95382 5.00428 5.12886 5.17966 5.22836 5.25736 5.36222 5.41932 5.45368 5.50694 5.52346 5.56385 5.59819 5.69672 5.70646 5.72055 5.75366 5.79786 5.94813 6.00982 6.08798 6.13273 6.16089 6.26628 6.42174 6.46601 6.56234 6.75354 6.77264 6.78810 6.93423 6.99136 7.08630 7.15136 7.17701 7.67516 7.96024 8.32078 8.58900 9.44929 9.97402 10.34293 11.35760 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.005357 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.525000 B = 5225.365981 C = 6865.700860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.069 3.931 4 C 0.079 3.921 5 H 0.090 0.910 6 O -0.353 6.353 7 C 0.032 3.968 8 C 0.489 3.511 9 O -0.536 6.536 10 N -0.697 5.697 11 C 0.115 3.885 12 C 0.190 3.810 13 N -0.710 5.710 14 C -0.229 4.229 15 H 0.069 0.931 16 C -0.008 4.008 17 N -0.930 5.930 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.293 1.293 22 C -0.114 4.114 23 C -0.109 4.109 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.113 4.113 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.403 0.597 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.384 0.616 39 H 0.254 0.746 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.083 0.917 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.058 0.942 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.733 -7.990 0.083 11.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.008 4.008 4 C 0.017 3.983 5 H 0.108 0.892 6 O -0.269 6.269 7 C -0.064 4.064 8 C 0.272 3.728 9 O -0.413 6.413 10 N -0.349 5.349 11 C -0.011 4.011 12 C 0.098 3.902 13 N -0.352 5.352 14 C -0.360 4.360 15 H 0.087 0.913 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.221 1.221 22 C -0.154 4.154 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.151 4.151 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.239 0.761 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.219 0.781 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.077 0.923 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.126 -7.689 1.024 11.234 hybrid contribution -1.192 0.533 -0.193 1.319 sum 6.934 -7.156 0.832 9.999 Atomic orbital electron populations 1.22759 0.80593 1.02532 1.00619 1.87832 1.19996 1.27136 1.95593 1.22526 0.90061 0.85539 1.02687 1.21989 0.94197 0.92390 0.89705 0.89177 1.88002 1.41873 1.67029 1.30036 1.22808 0.86845 0.94296 1.02490 1.20921 0.81728 0.87270 0.82837 1.90678 1.40477 1.71278 1.38894 1.45863 1.53101 1.17941 1.17999 1.21897 0.96043 0.82948 1.00259 1.19828 0.86586 0.93215 0.90533 1.42458 0.98681 1.55029 1.38996 1.19125 0.88839 1.22528 1.05503 0.91259 1.24655 0.97114 1.00746 0.97859 1.69649 1.13582 1.46716 1.27920 0.86266 0.81294 0.79847 0.79706 1.20626 1.21970 1.22074 1.21786 0.98461 0.97418 0.97738 1.21370 1.02493 0.96706 0.94119 1.21468 0.98969 0.95840 0.98703 1.21471 1.02285 0.95612 0.95924 1.21688 0.99508 0.98709 0.95240 0.93460 0.89709 0.93964 0.91737 0.90236 0.89505 0.94000 0.93867 0.76120 0.92851 0.91696 0.78061 0.93655 0.91751 0.93749 0.93795 0.89807 0.93258 0.93041 0.93302 0.90693 0.92291 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.39 -5.74 10.67 -40.09 -0.43 -6.17 16 3 C 0.07 1.05 5.57 37.16 0.21 1.26 16 4 C 0.08 1.20 2.80 -27.89 -0.08 1.13 16 5 H 0.09 1.16 7.79 -51.93 -0.40 0.76 16 6 O -0.35 -5.71 9.85 -59.70 -0.59 -6.30 16 7 C 0.03 0.40 10.81 101.05 1.09 1.49 16 8 C 0.49 8.55 7.13 -10.99 -0.08 8.47 16 9 O -0.54 -11.24 16.51 -14.31 -0.24 -11.48 16 10 N -0.70 -11.59 4.99 -60.30 -0.30 -11.89 16 11 C 0.11 2.01 4.37 -4.04 -0.02 1.99 16 12 C 0.19 3.24 0.41 -131.82 -0.05 3.18 16 13 N -0.71 -14.62 3.40 -47.23 -0.16 -14.78 16 14 C -0.23 -5.53 8.70 -15.06 -0.13 -5.66 16 15 H 0.07 1.72 6.77 -52.48 -0.36 1.37 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -25.32 13.07 55.49 0.73 -24.59 16 18 Si 0.90 21.33 29.55 -169.99 -5.02 16.31 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 C -0.11 -1.91 4.52 -26.73 -0.12 -2.03 16 23 C -0.11 -1.79 5.77 -26.73 -0.15 -1.95 16 24 C -0.11 -1.60 5.92 -26.73 -0.16 -1.76 16 25 C -0.12 -1.67 5.75 -26.73 -0.15 -1.83 16 26 C -0.11 -1.65 4.65 -26.73 -0.12 -1.77 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.21 7.77 -51.93 -0.40 0.81 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.40 6.39 7.09 -40.82 -0.29 6.11 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.31 7.50 -51.93 -0.39 0.92 16 38 H 0.38 8.53 6.63 -40.82 -0.27 8.26 16 39 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.06 1.19 7.23 -51.93 -0.38 0.82 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.67 7.60 -51.93 -0.39 1.27 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 1.27 6.92 -51.93 -0.36 0.91 16 48 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 49 H 0.06 0.80 7.28 -51.93 -0.38 0.42 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -29.33 387.09 -7.60 -36.94 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -8.67 Total: 12.41 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 1.25 Total: 3.72 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.26 Total: -51.26 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -1.25 Total: -23.95 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.33 -7.60 -36.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115718493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.654 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds