Wall clock time and date at job start Tue Mar 31 2020 10:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99468 * 2 1 4 4 C 1.53003 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46813 * 55.00048 * 4 3 2 6 6 O 1.42902 * 109.47110 * 295.00624 * 4 3 2 7 7 C 1.42896 * 114.00088 * 150.00002 * 6 4 3 8 8 C 1.50689 * 109.47152 * 175.00103 * 4 3 2 9 9 O 1.21287 * 120.00177 * 115.00404 * 8 4 3 10 10 N 1.34772 * 120.00367 * 295.00007 * 8 4 3 11 11 C 1.46501 * 120.00156 * 179.97438 * 10 8 4 12 12 C 1.53003 * 109.46803 * 176.62311 * 11 10 8 13 13 N 1.46499 * 109.47377 * 54.63316 * 12 11 10 14 14 C 1.36936 * 120.00004 * 62.83270 * 13 12 11 15 15 H 1.08005 * 120.00083 * 354.25730 * 14 13 12 16 16 C 1.38816 * 119.99802 * 173.97031 * 14 13 12 17 17 N 1.31611 * 120.00060 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99803 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47420 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47242 * 120.00377 * 18 16 14 21 21 H 1.48501 * 109.47207 * 240.00573 * 18 16 14 22 22 C 1.53005 * 109.46945 * 174.63064 * 12 11 10 23 23 C 1.53001 * 109.47149 * 180.02562 * 22 12 11 24 24 C 1.52997 * 109.46954 * 299.99640 * 23 22 12 25 25 C 1.53005 * 109.46899 * 60.00206 * 24 23 22 26 26 C 1.52996 * 109.47383 * 299.99882 * 25 24 23 27 27 H 1.08994 * 109.47652 * 59.99833 * 1 2 3 28 28 H 1.09004 * 109.46812 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46558 * 299.98916 * 1 2 3 30 30 H 1.08999 * 109.46703 * 60.00620 * 3 2 1 31 31 H 1.08997 * 109.47249 * 300.00421 * 3 2 1 32 32 H 1.08999 * 109.47003 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.46934 * 299.99554 * 7 6 4 34 34 H 1.08993 * 109.47243 * 59.99533 * 7 6 4 35 35 H 0.96999 * 119.99947 * 0.02562 * 10 8 4 36 36 H 1.08992 * 109.47066 * 56.62811 * 11 10 8 37 37 H 1.08991 * 109.47479 * 296.62556 * 11 10 8 38 38 H 0.96995 * 119.99919 * 242.83938 * 13 12 11 39 39 H 0.97000 * 119.99938 * 179.97438 * 17 16 14 40 40 H 1.09006 * 109.47053 * 299.99717 * 22 12 11 41 41 H 1.08997 * 109.47078 * 59.99850 * 22 12 11 42 42 H 1.08996 * 109.47050 * 179.97438 * 23 22 12 43 43 H 1.09000 * 109.47365 * 60.00286 * 23 22 12 44 44 H 1.08997 * 109.47132 * 300.00391 * 24 23 22 45 45 H 1.09001 * 109.47153 * 179.97438 * 24 23 22 46 46 H 1.08999 * 109.46713 * 179.97438 * 25 24 23 47 47 H 1.08997 * 109.47078 * 60.00152 * 25 24 23 48 48 H 1.09008 * 109.46908 * 300.00540 * 26 25 24 49 49 H 1.08996 * 109.47284 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 1 3.8507 0.5687 -0.8427 6 8 3.9659 0.5793 1.2201 7 6 5.1691 -0.1818 1.0986 8 6 4.1478 2.5561 -0.1244 9 8 4.8068 3.0106 0.7867 10 7 3.9633 3.2777 -1.2477 11 6 4.5582 4.6111 -1.3678 12 6 4.2701 5.1744 -2.7608 13 7 2.8267 5.1467 -3.0100 14 6 1.9822 5.8866 -2.2261 15 1 2.3678 6.4169 -1.3678 16 6 0.6315 5.9600 -2.5381 17 7 0.1626 5.3180 -3.5869 18 14 -0.5203 6.9700 -1.4692 19 1 0.2490 7.5897 -0.3605 20 1 -1.1505 8.0353 -2.2897 21 1 -1.5752 6.0884 -0.9078 22 6 4.7739 6.6169 -2.8418 23 6 4.4852 7.1805 -4.2347 24 6 5.2004 6.3307 -5.2869 25 6 4.6966 4.8883 -5.2059 26 6 4.9852 4.3247 -3.8131 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 1.6886 1.8463 0.8901 31 1 1.6885 1.8465 -0.8899 32 1 5.4288 -0.6080 2.0677 33 1 5.0199 -0.9846 0.3766 34 1 5.9766 0.4667 0.7591 35 1 3.4360 2.9145 -1.9763 36 1 5.6357 4.5429 -1.2192 37 1 4.1284 5.2700 -0.6134 38 1 2.4692 4.6040 -3.7301 39 1 -0.7813 5.3690 -3.8046 40 1 4.2640 7.2225 -2.0924 41 1 5.8477 6.6376 -2.6564 42 1 4.8437 8.2082 -4.2922 43 1 3.4112 7.1599 -4.4196 44 1 6.2744 6.3514 -5.1019 45 1 4.9944 6.7319 -6.2792 46 1 5.2058 4.2830 -5.9558 47 1 3.6227 4.8676 -5.3909 48 1 6.0592 4.3454 -3.6281 49 1 4.6267 3.2969 -3.7556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115718493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:01 Heat of formation + Delta-G solvation = -147.509790 kcal Electronic energy + Delta-G solvation = -28590.547781 eV Core-core repulsion = 24744.952777 eV Total energy + Delta-G solvation = -3845.595004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31222 -40.14717 -38.88498 -38.00652 -35.88624 -35.08308 -33.08233 -31.86961 -31.52226 -30.16074 -27.78281 -27.40683 -26.33620 -25.69035 -24.50658 -23.40635 -21.84063 -21.32828 -19.82881 -19.09675 -18.66262 -18.20459 -17.51580 -16.86849 -16.74170 -16.48418 -16.16892 -16.04687 -15.88562 -15.53764 -15.45175 -15.10432 -14.91885 -14.67891 -14.30733 -14.11813 -13.54710 -13.39961 -13.38349 -13.24643 -12.90445 -12.84456 -12.74088 -12.58964 -12.48973 -12.35988 -12.10699 -12.02160 -11.87130 -11.66924 -11.62765 -11.30799 -11.07193 -10.78230 -10.76205 -10.69314 -10.37168 -9.96089 -8.89500 -7.86981 -5.10886 1.42323 1.42879 1.48395 1.52931 2.08144 2.58419 2.68425 2.83757 3.45978 3.76416 3.81758 3.82544 3.92908 3.94602 4.03528 4.15214 4.30105 4.36456 4.40908 4.49234 4.51781 4.54744 4.55274 4.58706 4.68334 4.76048 4.78032 4.81343 4.83019 4.83064 4.91888 4.97676 5.08283 5.19543 5.23865 5.43457 5.50249 5.52536 5.56705 5.63157 5.68826 5.82565 5.95726 6.04615 6.36251 6.58697 7.20256 7.45638 8.17618 8.44573 9.35285 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.005357 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.525000 B = 5225.365981 C = 6865.700860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.074 3.926 4 C 0.085 3.915 5 H 0.119 0.881 6 O -0.378 6.378 7 C 0.026 3.974 8 C 0.489 3.511 9 O -0.574 6.574 10 N -0.690 5.690 11 C 0.121 3.879 12 C 0.189 3.811 13 N -0.708 5.708 14 C -0.204 4.204 15 H 0.060 0.940 16 C -0.059 4.059 17 N -0.957 5.957 18 Si 0.939 3.061 19 H -0.280 1.280 20 H -0.300 1.300 21 H -0.299 1.299 22 C -0.113 4.113 23 C -0.106 4.106 24 C -0.108 4.108 25 C -0.112 4.112 26 C -0.108 4.108 27 H 0.045 0.955 28 H 0.110 0.890 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.408 0.592 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.378 0.622 39 H 0.246 0.754 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.044 0.956 48 H 0.083 0.917 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.594 -9.217 -0.569 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.003 4.003 4 C 0.024 3.976 5 H 0.136 0.864 6 O -0.295 6.295 7 C -0.070 4.070 8 C 0.275 3.725 9 O -0.453 6.453 10 N -0.342 5.342 11 C -0.006 4.006 12 C 0.098 3.902 13 N -0.348 5.348 14 C -0.336 4.336 15 H 0.078 0.922 16 C -0.251 4.251 17 N -0.608 5.608 18 Si 0.772 3.228 19 H -0.205 1.205 20 H -0.227 1.227 21 H -0.227 1.227 22 C -0.153 4.153 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.146 4.146 27 H 0.064 0.936 28 H 0.129 0.871 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.245 0.755 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.212 0.788 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.101 0.899 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.014 -8.917 0.375 13.414 hybrid contribution -1.688 0.914 0.054 1.921 sum 8.325 -8.003 0.429 11.556 Atomic orbital electron populations 1.22964 0.79229 1.04275 1.00609 1.87809 1.21467 1.26522 1.95584 1.22396 0.90376 0.85835 1.01730 1.21950 0.93820 0.91233 0.90623 0.86374 1.87971 1.43372 1.67497 1.30682 1.23028 0.85328 0.94396 1.04219 1.21377 0.80981 0.88013 0.82167 1.90656 1.42281 1.72331 1.40080 1.45830 1.52765 1.17494 1.18074 1.21785 0.96643 0.82798 0.99329 1.20030 0.84650 0.94216 0.91259 1.42469 1.00155 1.54150 1.38062 1.19199 0.89048 1.20741 1.04626 0.92173 1.25074 0.98374 1.02573 0.99120 1.69738 1.13120 1.48601 1.29346 0.85574 0.79977 0.78656 0.78577 1.20532 1.22741 1.22689 1.21773 0.99811 0.96444 0.97274 1.21296 1.00176 0.98152 0.94730 1.21447 0.99926 0.95017 0.98111 1.21434 1.00682 0.96351 0.96524 1.21667 1.00445 0.98336 0.94106 0.93627 0.87139 0.93834 0.93371 0.90558 0.87934 0.91745 0.94415 0.75503 0.91398 0.94876 0.78791 0.94458 0.94369 0.90988 0.92632 0.94012 0.90836 0.92361 0.90710 0.93715 0.89873 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.82 16 2 O -0.39 -11.22 10.67 -144.34 -1.54 -12.76 16 3 C 0.07 2.23 5.57 71.98 0.40 2.63 16 4 C 0.09 2.50 2.80 29.85 0.08 2.58 16 5 H 0.12 2.76 7.79 -2.39 -0.02 2.74 16 6 O -0.38 -11.80 9.85 -125.59 -1.24 -13.04 16 7 C 0.03 0.59 10.81 113.37 1.23 1.82 16 8 C 0.49 16.80 7.13 87.65 0.63 17.43 16 9 O -0.57 -23.97 16.51 15.94 0.26 -23.70 16 10 N -0.69 -22.34 4.99 -463.09 -2.31 -24.65 16 11 C 0.12 4.13 4.37 86.38 0.38 4.50 16 12 C 0.19 6.21 0.41 3.61 0.00 6.21 16 13 N -0.71 -29.26 3.40 -303.33 -1.03 -30.29 16 14 C -0.20 -10.01 8.70 84.03 0.73 -9.27 16 15 H 0.06 3.06 6.77 -2.91 -0.02 3.04 16 16 C -0.06 -3.09 5.50 84.86 0.47 -2.62 16 17 N -0.96 -53.14 13.07 21.65 0.28 -52.85 16 18 Si 0.94 44.80 29.55 68.60 2.03 46.83 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 21 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 22 C -0.11 -3.65 4.52 30.60 0.14 -3.51 16 23 C -0.11 -3.35 5.77 30.59 0.18 -3.18 16 24 C -0.11 -2.76 5.92 30.59 0.18 -2.58 16 25 C -0.11 -2.97 5.75 30.59 0.18 -2.79 16 26 C -0.11 -2.82 4.65 30.59 0.14 -2.68 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 2.31 7.77 -2.39 -0.02 2.29 16 32 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.41 12.51 7.09 -92.71 -0.66 11.85 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.03 1.34 7.50 -2.39 -0.02 1.33 16 38 H 0.38 16.88 6.63 -92.71 -0.61 16.27 16 39 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 40 H 0.04 1.41 7.23 -2.38 -0.02 1.39 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.04 1.67 7.60 -2.39 -0.02 1.65 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.04 1.47 6.92 -2.39 -0.02 1.45 16 48 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 49 H 0.06 1.61 7.28 -2.39 -0.02 1.59 16 Total: -1.00 -64.21 387.09 2.09 -62.12 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.34 Total: 37.99 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.97 Total: 10.36 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -3.06 Total: -107.80 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -2.51 Total: -49.50 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.21 2.09 -62.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115718493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.388 kcal (2) G-P(sol) polarization free energy of solvation -64.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds