Wall clock time and date at job start Tue Mar 31 2020 10:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99865 * 2 1 4 4 C 1.53004 * 109.47219 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46781 * 64.99989 * 4 3 2 6 6 C 1.42899 * 113.99694 * 179.97438 * 5 4 3 7 7 C 1.53074 * 109.43928 * 89.79715 * 6 5 4 8 8 C 1.53200 * 109.29270 * 181.23499 * 7 6 5 9 9 N 1.46924 * 108.89456 * 305.57637 * 8 7 6 10 10 C 1.34775 * 120.63159 * 233.55608 * 9 8 7 11 11 O 1.21585 * 119.99810 * 354.96981 * 10 9 8 12 12 N 1.34773 * 119.99548 * 174.96204 * 10 9 8 13 13 C 1.46509 * 119.99865 * 185.07796 * 12 10 9 14 14 C 1.52996 * 109.47132 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46695 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47124 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99761 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00454 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00453 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99870 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47033 * 89.99971 * 20 18 16 22 22 H 1.48495 * 109.47068 * 210.00262 * 20 18 16 23 23 H 1.48500 * 109.46762 * 330.00265 * 20 18 16 24 24 C 1.46925 * 118.73744 * 53.54010 * 9 8 7 25 25 C 1.53041 * 109.46041 * 210.00130 * 6 5 4 26 26 H 1.08999 * 109.47284 * 60.00182 * 1 2 3 27 27 H 1.09002 * 109.46791 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47350 * 300.00296 * 1 2 3 29 29 H 1.08997 * 109.47088 * 60.00235 * 3 2 1 30 30 H 1.08998 * 109.47115 * 299.99812 * 3 2 1 31 31 H 1.08997 * 109.47089 * 305.00462 * 4 3 2 32 32 H 1.08999 * 109.47070 * 184.99866 * 4 3 2 33 33 H 1.08997 * 109.46054 * 329.97664 * 6 5 4 34 34 H 1.08999 * 109.39304 * 61.36118 * 7 6 5 35 35 H 1.09001 * 109.62443 * 301.24975 * 7 6 5 36 36 H 1.09003 * 109.58604 * 185.71544 * 8 7 6 37 37 H 1.09006 * 109.58223 * 65.43764 * 8 7 6 38 38 H 0.97000 * 120.00552 * 5.07719 * 12 10 9 39 39 H 1.09005 * 109.46845 * 300.00179 * 13 12 10 40 40 H 1.09003 * 109.47202 * 59.99741 * 13 12 10 41 41 H 1.08989 * 109.47520 * 299.99640 * 14 13 12 42 42 H 1.09002 * 109.46741 * 60.00308 * 14 13 12 43 43 H 1.08998 * 109.47694 * 300.00233 * 15 14 13 44 44 H 1.08998 * 109.47593 * 60.00125 * 15 14 13 45 45 H 0.96996 * 120.00267 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.59207 * 66.17170 * 24 9 8 47 47 H 1.09002 * 109.59022 * 186.46095 * 24 9 8 48 48 H 1.08996 * 109.49614 * 58.67679 * 25 6 5 49 49 H 1.08998 * 109.52116 * 298.59581 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3822 0.4199 -1.3221 7 6 5.7848 -0.9388 -0.7433 8 6 7.3068 -1.0933 -0.8261 9 7 7.7322 -0.8762 -2.2155 10 6 8.4842 -1.7939 -2.8548 11 8 8.8936 -2.7690 -2.2550 12 7 8.7822 -1.6307 -4.1590 13 6 9.5042 -2.6804 -4.8824 14 6 9.7140 -2.2472 -6.3346 15 6 10.4686 -3.3432 -7.0898 16 6 10.6758 -2.9163 -8.5202 17 1 10.3066 -1.9588 -8.8568 18 6 11.3367 -3.7479 -9.3991 19 7 11.5179 -3.3752 -10.6472 20 14 11.9759 -5.4038 -8.8167 21 1 10.9277 -6.4368 -9.0155 22 1 13.1856 -5.7695 -9.5964 23 1 12.3224 -5.3213 -7.3750 24 6 7.3219 0.3603 -2.8949 25 6 5.7995 0.4974 -2.7924 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8426 32 1 3.9784 2.1767 0.0902 33 1 5.8781 1.2124 -0.7616 34 1 5.3069 -1.7327 -1.3173 35 1 5.4689 -1.0013 0.2980 36 1 7.5899 -2.0973 -0.5099 37 1 7.7844 -0.3580 -0.1785 38 1 8.5187 -0.8183 -4.6188 39 1 10.4723 -2.8472 -4.4099 40 1 8.9243 -3.6031 -4.8582 41 1 8.7463 -2.0801 -6.8074 42 1 10.2942 -1.3247 -6.3584 43 1 11.4364 -3.5100 -6.6170 44 1 9.8889 -4.2659 -7.0661 45 1 11.9832 -3.9601 -11.2654 46 1 7.7987 1.2157 -2.4164 47 1 7.6172 0.3165 -3.9433 48 1 5.4918 1.4569 -3.2078 49 1 5.3233 -0.3097 -3.3492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116079351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:31 Heat of formation + Delta-G solvation = -128.242159 kcal Electronic energy + Delta-G solvation = -26093.090195 eV Core-core repulsion = 22248.330699 eV Total energy + Delta-G solvation = -3844.759497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51515 -39.09528 -38.05961 -36.54858 -35.47539 -33.42737 -32.40589 -31.65737 -30.94920 -30.17514 -27.17129 -26.69674 -24.90007 -23.79877 -22.86852 -22.66137 -21.20787 -20.52532 -19.43246 -18.28801 -17.38131 -17.11931 -16.75157 -16.20739 -15.91845 -15.77041 -15.68218 -15.24854 -14.75152 -14.56672 -14.38531 -14.24832 -13.95138 -13.68771 -13.31989 -13.13307 -12.73972 -12.68476 -12.62850 -12.34235 -11.95883 -11.94010 -11.82666 -11.57725 -11.41921 -11.29208 -11.04004 -10.89091 -10.86263 -10.22675 -10.13561 -9.99181 -9.83611 -9.77298 -9.64854 -9.20775 -9.02240 -8.55584 -8.53291 -6.04606 -4.03190 2.62378 3.11889 3.31628 3.33332 3.35829 3.40725 3.45580 3.91171 4.35559 4.44854 4.46399 4.55374 4.64705 4.72824 4.76657 4.84608 4.85826 4.94568 4.94919 5.00423 5.13587 5.16182 5.23795 5.27713 5.29653 5.31827 5.50623 5.52591 5.57185 5.69436 5.72108 5.80190 5.95977 6.06574 6.32703 6.43481 6.49538 6.67908 6.71508 6.84820 6.88036 6.95027 7.25764 7.39192 7.77500 8.01905 8.51901 8.68074 8.99162 9.57792 11.08579 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.001969 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.595338 B =14217.579608 C =14621.110530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.372 6.372 6 C 0.093 3.907 7 C -0.156 4.156 8 C 0.133 3.867 9 N -0.635 5.635 10 C 0.706 3.294 11 O -0.591 6.591 12 N -0.742 5.742 13 C 0.132 3.868 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C 0.115 3.885 25 C -0.132 4.132 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.394 0.606 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.263 0.737 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.178 13.722 24.867 34.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.292 6.292 6 C 0.035 3.965 7 C -0.194 4.194 8 C 0.010 3.990 9 N -0.373 5.373 10 C 0.407 3.593 11 O -0.470 6.470 12 N -0.398 5.398 13 C 0.008 3.992 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.009 4.009 25 C -0.170 4.170 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.230 0.770 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.794 12.686 24.965 33.725 hybrid contribution 0.077 -0.069 0.094 0.140 sum -18.717 12.617 25.059 33.727 Atomic orbital electron populations 1.22754 0.81008 1.02975 0.99840 1.87978 1.19631 1.27194 1.95359 1.22567 0.92443 0.85605 1.00824 1.22554 0.93326 0.97309 0.88209 1.88007 1.21862 1.81777 1.37516 1.22057 0.81377 0.96371 0.96678 1.22458 0.96208 0.98678 1.02078 1.21366 0.92888 1.03567 0.81208 1.47295 1.55489 1.20302 1.14256 1.15883 0.79008 0.82507 0.81854 1.90901 1.58140 1.31494 1.66421 1.45514 1.62191 1.23142 1.08988 1.21530 0.95836 0.89352 0.92458 1.21703 1.01155 1.00832 0.91392 1.19502 0.95297 0.93973 0.96136 1.21099 1.36870 1.05289 0.92683 0.91022 1.25027 0.95493 0.98237 0.94734 1.69912 1.42704 1.37517 1.04102 0.86777 0.78672 0.84447 0.79420 1.20247 1.21392 1.18857 1.21591 0.94034 0.87053 0.98191 1.21992 0.95413 1.03921 0.95683 0.93976 0.89503 0.94212 0.91924 0.92374 0.92412 0.91799 0.92109 0.90418 0.90566 0.88470 0.91892 0.76979 0.91878 0.92027 0.92177 0.92152 0.96255 0.96700 0.92722 0.91124 0.89560 0.89924 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.50 10.67 -40.08 -0.43 -3.93 16 3 C 0.06 0.41 6.32 37.16 0.23 0.64 16 4 C 0.06 0.42 6.13 37.16 0.23 0.65 16 5 O -0.37 -3.51 9.95 -40.08 -0.40 -3.91 16 6 C 0.09 0.74 2.57 -26.67 -0.07 0.68 16 7 C -0.16 -1.38 5.70 -26.59 -0.15 -1.53 16 8 C 0.13 1.33 6.41 -3.71 -0.02 1.31 16 9 N -0.63 -7.31 2.97 -178.49 -0.53 -7.84 16 10 C 0.71 10.97 8.30 -86.92 -0.72 10.25 16 11 O -0.59 -11.55 15.79 5.29 0.08 -11.46 16 12 N -0.74 -10.82 5.47 -65.22 -0.36 -11.18 16 13 C 0.13 2.26 5.68 -4.04 -0.02 2.24 16 14 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 16 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 20 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 24 C 0.12 0.94 6.43 -3.71 -0.02 0.92 16 25 C -0.13 -1.05 5.73 -26.61 -0.15 -1.20 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 7.84 -51.93 -0.41 -0.03 16 32 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.06 0.39 7.79 -51.93 -0.40 -0.02 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.59 7.84 -51.93 -0.41 0.18 16 36 H 0.10 1.16 7.03 -51.93 -0.37 0.80 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.39 4.67 5.93 -40.82 -0.24 4.43 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.11 8.14 -51.94 -0.42 0.68 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 44 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.66 5.56 -51.93 -0.29 0.37 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -35.49 390.88 -8.71 -44.20 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -8.81 Total: -1.26 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -0.27 Total: -0.67 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.11 Total: -46.11 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.74 Total: -19.30 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.49 -8.71 -44.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116079351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.040 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds