Wall clock time and date at job start Tue Mar 31 2020 10:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99865 * 2 1 4 4 C 1.53004 * 109.47219 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46781 * 64.99989 * 4 3 2 6 6 C 1.42899 * 113.99694 * 179.97438 * 5 4 3 7 7 C 1.53074 * 109.43928 * 89.79715 * 6 5 4 8 8 C 1.53200 * 109.29270 * 181.23499 * 7 6 5 9 9 N 1.46924 * 108.89456 * 305.57637 * 8 7 6 10 10 C 1.34775 * 120.63159 * 233.55608 * 9 8 7 11 11 O 1.21585 * 119.99810 * 354.96981 * 10 9 8 12 12 N 1.34773 * 119.99548 * 174.96204 * 10 9 8 13 13 C 1.46509 * 119.99865 * 185.07796 * 12 10 9 14 14 C 1.52996 * 109.47132 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46695 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47124 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99761 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00454 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00453 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99870 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47033 * 89.99971 * 20 18 16 22 22 H 1.48495 * 109.47068 * 210.00262 * 20 18 16 23 23 H 1.48500 * 109.46762 * 330.00265 * 20 18 16 24 24 C 1.46925 * 118.73744 * 53.54010 * 9 8 7 25 25 C 1.53041 * 109.46041 * 210.00130 * 6 5 4 26 26 H 1.08999 * 109.47284 * 60.00182 * 1 2 3 27 27 H 1.09002 * 109.46791 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47350 * 300.00296 * 1 2 3 29 29 H 1.08997 * 109.47088 * 60.00235 * 3 2 1 30 30 H 1.08998 * 109.47115 * 299.99812 * 3 2 1 31 31 H 1.08997 * 109.47089 * 305.00462 * 4 3 2 32 32 H 1.08999 * 109.47070 * 184.99866 * 4 3 2 33 33 H 1.08997 * 109.46054 * 329.97664 * 6 5 4 34 34 H 1.08999 * 109.39304 * 61.36118 * 7 6 5 35 35 H 1.09001 * 109.62443 * 301.24975 * 7 6 5 36 36 H 1.09003 * 109.58604 * 185.71544 * 8 7 6 37 37 H 1.09006 * 109.58223 * 65.43764 * 8 7 6 38 38 H 0.97000 * 120.00552 * 5.07719 * 12 10 9 39 39 H 1.09005 * 109.46845 * 300.00179 * 13 12 10 40 40 H 1.09003 * 109.47202 * 59.99741 * 13 12 10 41 41 H 1.08989 * 109.47520 * 299.99640 * 14 13 12 42 42 H 1.09002 * 109.46741 * 60.00308 * 14 13 12 43 43 H 1.08998 * 109.47694 * 300.00233 * 15 14 13 44 44 H 1.08998 * 109.47593 * 60.00125 * 15 14 13 45 45 H 0.96996 * 120.00267 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.59207 * 66.17170 * 24 9 8 47 47 H 1.09002 * 109.59022 * 186.46095 * 24 9 8 48 48 H 1.08996 * 109.49614 * 58.67679 * 25 6 5 49 49 H 1.08998 * 109.52116 * 298.59581 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3822 0.4199 -1.3221 7 6 5.7848 -0.9388 -0.7433 8 6 7.3068 -1.0933 -0.8261 9 7 7.7322 -0.8762 -2.2155 10 6 8.4842 -1.7939 -2.8548 11 8 8.8936 -2.7690 -2.2550 12 7 8.7822 -1.6307 -4.1590 13 6 9.5042 -2.6804 -4.8824 14 6 9.7140 -2.2472 -6.3346 15 6 10.4686 -3.3432 -7.0898 16 6 10.6758 -2.9163 -8.5202 17 1 10.3066 -1.9588 -8.8568 18 6 11.3367 -3.7479 -9.3991 19 7 11.5179 -3.3752 -10.6472 20 14 11.9759 -5.4038 -8.8167 21 1 10.9277 -6.4368 -9.0155 22 1 13.1856 -5.7695 -9.5964 23 1 12.3224 -5.3213 -7.3750 24 6 7.3219 0.3603 -2.8949 25 6 5.7995 0.4974 -2.7924 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8426 32 1 3.9784 2.1767 0.0902 33 1 5.8781 1.2124 -0.7616 34 1 5.3069 -1.7327 -1.3173 35 1 5.4689 -1.0013 0.2980 36 1 7.5899 -2.0973 -0.5099 37 1 7.7844 -0.3580 -0.1785 38 1 8.5187 -0.8183 -4.6188 39 1 10.4723 -2.8472 -4.4099 40 1 8.9243 -3.6031 -4.8582 41 1 8.7463 -2.0801 -6.8074 42 1 10.2942 -1.3247 -6.3584 43 1 11.4364 -3.5100 -6.6170 44 1 9.8889 -4.2659 -7.0661 45 1 11.9832 -3.9601 -11.2654 46 1 7.7987 1.2157 -2.4164 47 1 7.6172 0.3165 -3.9433 48 1 5.4918 1.4569 -3.2078 49 1 5.3233 -0.3097 -3.3492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116079351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:30 Heat of formation + Delta-G solvation = -153.322914 kcal Electronic energy + Delta-G solvation = -26094.177778 eV Core-core repulsion = 22248.330699 eV Total energy + Delta-G solvation = -3845.847080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.52424 -39.82166 -38.70101 -37.42559 -36.89733 -35.20575 -33.66299 -32.80167 -32.01220 -30.76957 -28.86563 -27.17807 -25.85040 -24.76824 -24.02477 -23.37288 -22.23489 -22.04886 -20.48933 -19.37003 -18.80905 -17.97810 -17.63239 -17.34416 -16.93627 -16.42784 -16.34004 -16.28397 -15.92825 -15.85704 -15.41824 -15.31785 -14.91048 -14.74711 -14.67464 -14.13457 -13.94421 -13.75980 -13.56262 -13.38880 -13.12860 -12.98402 -12.72173 -12.67549 -12.40162 -12.29180 -11.96980 -11.91386 -11.88168 -11.77211 -11.59671 -11.54996 -11.32385 -11.19540 -10.75267 -10.63892 -10.41986 -10.24933 -9.54799 -8.28540 -6.32168 1.37571 1.39103 1.51086 1.59835 2.08167 2.37142 2.66187 2.88662 2.90983 3.07215 3.71055 3.78438 4.00650 4.04499 4.09233 4.17580 4.22192 4.24005 4.28599 4.33741 4.43413 4.46922 4.51588 4.53233 4.58619 4.62292 4.64972 4.78281 4.81470 4.85722 4.86645 4.88544 4.90754 4.98882 5.04908 5.13233 5.25945 5.41525 5.49725 5.55180 5.56923 5.66239 5.89046 6.20684 6.28406 6.36021 6.75477 6.93109 7.32577 7.51334 8.87704 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.001969 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.595338 B =14217.579608 C =14621.110530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.057 3.943 4 C 0.056 3.944 5 O -0.397 6.397 6 C 0.094 3.906 7 C -0.147 4.147 8 C 0.132 3.868 9 N -0.629 5.629 10 C 0.700 3.300 11 O -0.637 6.637 12 N -0.734 5.734 13 C 0.145 3.855 14 C -0.098 4.098 15 C -0.012 4.012 16 C -0.530 4.530 17 H 0.039 0.961 18 C 0.005 3.995 19 N -0.949 5.949 20 Si 0.946 3.054 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.248 1.248 24 C 0.112 3.888 25 C -0.127 4.127 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.408 0.592 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.021 0.979 44 H 0.019 0.981 45 H 0.266 0.734 46 H 0.100 0.900 47 H 0.091 0.909 48 H 0.102 0.898 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.636 14.964 26.872 36.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.020 4.020 4 C -0.020 4.020 5 O -0.316 6.316 6 C 0.036 3.964 7 C -0.186 4.186 8 C 0.009 3.991 9 N -0.366 5.366 10 C 0.402 3.598 11 O -0.519 6.519 12 N -0.392 5.392 13 C 0.021 3.979 14 C -0.136 4.136 15 C -0.050 4.050 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.192 4.192 19 N -0.590 5.590 20 Si 0.770 3.230 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.172 1.172 24 C -0.011 4.011 25 C -0.166 4.166 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.247 0.753 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.037 0.963 45 H 0.075 0.925 46 H 0.118 0.882 47 H 0.109 0.891 48 H 0.120 0.880 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.299 13.991 26.986 36.006 hybrid contribution 0.124 -0.341 -0.524 0.637 sum -19.174 13.650 26.462 35.415 Atomic orbital electron populations 1.22882 0.79800 1.03468 1.00848 1.87927 1.21212 1.28955 1.95600 1.22758 0.92413 0.84856 1.01928 1.22784 0.93562 0.98491 0.87149 1.87987 1.22473 1.82285 1.38900 1.22092 0.81277 0.96228 0.96779 1.22369 0.95043 0.98687 1.02482 1.21470 0.93756 1.03086 0.80750 1.47384 1.54072 1.20439 1.14736 1.16064 0.79317 0.82626 0.81840 1.90867 1.60075 1.33587 1.67379 1.45249 1.61910 1.23163 1.08857 1.21160 0.95660 0.89709 0.91376 1.21468 1.00781 0.99450 0.91947 1.19467 0.96142 0.95588 0.93838 1.21457 1.36124 1.04043 0.95138 0.94294 1.25965 0.95959 1.02485 0.94768 1.70053 1.44109 1.39301 1.05559 0.85716 0.78220 0.79422 0.79671 1.19330 1.20970 1.17190 1.21864 0.94395 0.86229 0.98575 1.21951 0.94894 1.03998 0.95714 0.93581 0.89398 0.92537 0.89517 0.92463 0.92458 0.89119 0.89429 0.93349 0.89305 0.90970 0.89105 0.75285 0.92678 0.92885 0.91745 0.91570 0.96037 0.96270 0.92527 0.88215 0.89060 0.87988 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.32 10.67 -144.34 -1.54 -8.86 16 3 C 0.06 0.64 6.32 71.98 0.45 1.10 16 4 C 0.06 0.63 6.13 71.98 0.44 1.07 16 5 O -0.40 -6.81 9.95 -144.34 -1.44 -8.24 16 6 C 0.09 1.28 2.57 30.63 0.08 1.36 16 7 C -0.15 -2.46 5.70 30.69 0.18 -2.28 16 8 C 0.13 2.48 6.41 86.37 0.55 3.03 16 9 N -0.63 -13.57 2.97 -836.88 -2.49 -16.06 16 10 C 0.70 21.27 8.30 179.06 1.49 22.75 16 11 O -0.64 -25.04 15.79 -3.99 -0.06 -25.11 16 12 N -0.73 -20.55 5.47 -478.52 -2.62 -23.17 16 13 C 0.15 4.87 5.68 86.38 0.49 5.36 16 14 C -0.10 -3.62 5.27 30.59 0.16 -3.46 16 15 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 16 C -0.53 -30.26 9.66 25.60 0.25 -30.01 16 17 H 0.04 2.41 7.99 -2.91 -0.02 2.38 16 18 C 0.01 0.30 5.47 84.65 0.46 0.76 16 19 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 20 Si 0.95 44.86 27.47 68.60 1.88 46.75 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 24 C 0.11 1.53 6.43 86.36 0.56 2.09 16 25 C -0.13 -1.75 5.73 30.67 0.18 -1.58 16 26 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.63 7.84 -2.39 -0.02 0.61 16 32 H 0.09 0.50 8.08 -2.39 -0.02 0.48 16 33 H 0.09 0.75 7.79 -2.39 -0.02 0.74 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.25 7.84 -2.39 -0.02 1.23 16 36 H 0.07 1.74 7.03 -2.39 -0.02 1.73 16 37 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.41 8.94 5.93 -92.71 -0.55 8.39 16 39 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 43 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 44 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 45 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 46 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.09 1.16 5.56 -2.39 -0.01 1.15 16 48 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -78.42 390.88 1.00 -77.42 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.31 Total: 15.23 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 6.65 Total: 1.27 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -4.81 Total: -98.46 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -3.04 Total: -42.21 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Total: -78.42 1.00 -77.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116079351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.901 kcal (2) G-P(sol) polarization free energy of solvation -78.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds