Wall clock time and date at job start Tue Mar 31 2020 11:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86802 * 119.99804 * 2 1 4 4 H 1.48503 * 109.47001 * 240.00235 * 3 2 1 5 5 H 1.48499 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47368 * 120.00521 * 3 2 1 7 7 C 1.40028 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00004 * 170.72680 * 7 2 1 9 9 C 1.41316 * 119.99480 * 350.72633 * 7 2 1 10 10 C 1.40590 * 119.78246 * 161.94439 * 9 7 2 11 11 C 1.38349 * 119.14890 * 179.97438 * 10 9 7 12 12 C 1.38639 * 118.67960 * 359.75050 * 11 10 9 13 13 C 1.39754 * 119.48809 * 0.47872 * 12 11 10 14 14 N 1.38831 * 119.58348 * 179.79114 * 13 12 11 15 15 C 1.48554 * 110.99841 * 295.14491 * 14 13 12 16 16 C 1.54379 * 104.59302 * 200.96058 * 15 14 13 17 17 C 1.54256 * 105.06336 * 23.84759 * 16 15 14 18 18 C 1.48559 * 111.00105 * 179.72053 * 14 13 12 19 19 H 1.08998 * 110.51102 * 40.21011 * 18 14 13 20 20 C 1.52998 * 110.40938 * 277.81670 * 18 14 13 21 21 C 1.53001 * 109.47222 * 68.38039 * 20 18 14 22 22 C 1.52998 * 109.47222 * 179.97438 * 21 20 18 23 23 C 1.54270 * 110.02973 * 292.16082 * 22 21 20 24 24 C 1.54886 * 104.19625 * 217.10794 * 23 22 21 25 25 C 1.54893 * 102.75049 * 37.94237 * 24 23 22 26 26 C 1.53872 * 110.03443 * 174.99767 * 22 21 20 27 27 N 1.31979 * 120.83533 * 359.50443 * 13 12 11 28 28 H 0.96998 * 120.00158 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.42337 * 0.02562 * 10 9 7 30 30 H 1.08004 * 120.65704 * 180.02562 * 11 10 9 31 31 H 1.07997 * 120.25280 * 180.26298 * 12 11 10 32 32 H 1.08995 * 110.41571 * 82.17797 * 15 14 13 33 33 H 1.09010 * 110.50845 * 319.78479 * 15 14 13 34 34 H 1.09009 * 110.32111 * 264.94825 * 16 15 14 35 35 H 1.09002 * 110.32363 * 142.74692 * 16 15 14 36 36 H 1.09004 * 110.32293 * 241.10666 * 17 16 15 37 37 H 1.08996 * 110.41219 * 118.94342 * 17 16 15 38 38 H 1.08993 * 109.47537 * 308.37423 * 20 18 14 39 39 H 1.09005 * 109.46795 * 188.37500 * 20 18 14 40 40 H 1.08993 * 109.47367 * 59.99280 * 21 20 18 41 41 H 1.09005 * 109.46796 * 299.99460 * 21 20 18 42 42 H 1.08998 * 110.02039 * 53.60035 * 22 21 20 43 43 H 1.09003 * 110.48229 * 335.78703 * 23 22 21 44 44 H 1.09000 * 110.48818 * 98.42949 * 23 22 21 45 45 H 1.09000 * 110.75636 * 279.62597 * 24 23 22 46 46 H 1.09002 * 110.91273 * 156.32792 * 24 23 22 47 47 H 1.08994 * 110.48434 * 203.38026 * 25 24 23 48 48 H 1.08996 * 110.59791 * 80.79144 * 25 24 23 49 49 H 1.08997 * 110.03313 * 238.56609 * 26 22 21 50 50 H 1.09004 * 110.03191 * 359.94831 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2126 5 1 1.2763 2.7465 0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 3.0770 -1.2186 -0.1513 9 6 1.3149 -2.4285 0.1961 10 6 1.9179 -3.6435 -0.1736 11 6 1.2281 -4.8262 0.0253 12 6 -0.0371 -4.7717 0.5896 13 6 -0.5849 -3.5324 0.9318 14 7 -1.8534 -3.4752 1.4930 15 6 -2.8828 -3.9460 0.5310 16 6 -4.2048 -3.3389 1.0479 17 6 -3.7838 -2.1061 1.8740 18 6 -2.2429 -2.0719 1.7867 19 1 -1.9222 -1.4102 0.9822 20 6 -1.6429 -1.6195 3.1195 21 6 -0.1231 -1.5081 2.9830 22 6 0.4769 -1.0551 4.3155 23 6 0.0560 0.3980 4.6176 24 6 1.3063 1.0252 5.2826 25 6 2.4724 0.3918 4.4836 26 6 2.0132 -1.0590 4.2304 27 7 0.0907 -2.4161 0.7335 28 1 -0.4850 0.8400 0.0004 29 1 2.9073 -3.6535 -0.6067 30 1 1.6683 -5.7734 -0.2495 31 1 -0.5964 -5.6797 0.7601 32 1 -2.9372 -5.0346 0.5350 33 1 -2.6634 -3.5808 -0.4723 34 1 -4.7297 -4.0563 1.6789 35 1 -4.8352 -3.0370 0.2115 36 1 -4.1020 -2.2183 2.9105 37 1 -4.2075 -1.1982 1.4448 38 1 -1.8858 -2.3477 3.8932 39 1 -2.0553 -0.6481 3.3924 40 1 0.1199 -0.7800 2.2092 41 1 0.2893 -2.4796 2.7100 42 1 0.1457 -1.7149 5.1174 43 1 -0.1896 0.9237 3.6949 44 1 -0.7904 0.4151 5.3043 45 1 1.3640 0.7482 6.3352 46 1 1.3046 2.1093 5.1695 47 1 3.3894 0.4044 5.0726 48 1 2.6193 0.9159 3.5393 49 1 2.4277 -1.7200 4.9915 50 1 2.3315 -1.3845 3.2400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116661567.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:32 Heat of formation + Delta-G solvation = 31.308712 kcal Electronic energy + Delta-G solvation = -28641.659400 eV Core-core repulsion = 25246.960563 eV Total energy + Delta-G solvation = -3394.698837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.63604 -37.73168 -37.15195 -33.73919 -32.74850 -31.76697 -30.37464 -28.96785 -28.25903 -28.14919 -25.53641 -25.43865 -22.45231 -21.74196 -21.11765 -20.18452 -19.97330 -19.00486 -18.76729 -17.44788 -16.12342 -15.34812 -15.09099 -14.89807 -14.52696 -14.41468 -14.39034 -13.86666 -13.26365 -12.94674 -12.82350 -12.81808 -12.37953 -12.20237 -11.92238 -11.69051 -11.43590 -11.21908 -11.11595 -11.08835 -10.84598 -10.74386 -10.64990 -10.58161 -10.54468 -10.49045 -10.42283 -10.14996 -10.12493 -9.89300 -9.66795 -9.51374 -9.29702 -9.04525 -8.61186 -7.95503 -7.44529 -6.91462 -6.58547 -4.48992 2.72177 2.97619 3.06322 3.09094 3.19557 3.93249 4.54826 4.82713 5.08625 5.15595 5.17715 5.27052 5.28392 5.44082 5.72739 5.83139 5.93404 5.97593 5.98593 6.02215 6.06426 6.10059 6.10565 6.17017 6.21976 6.26013 6.28070 6.30407 6.33620 6.40557 6.44614 6.52384 6.54889 6.60598 6.69237 6.75173 6.77914 6.78832 6.83700 6.94309 6.99596 7.13201 7.17732 7.27352 7.36529 7.51944 7.64701 7.76550 7.85545 7.99563 8.17931 8.39845 8.70925 8.97261 10.00683 10.26885 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010461 B = 0.006981 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.899792 B = 4010.054726 C = 4951.310239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.089 3.911 3 Si 0.892 3.108 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.439 4.439 8 H 0.080 0.920 9 C 0.282 3.718 10 C -0.288 4.288 11 C -0.051 4.051 12 C -0.306 4.306 13 C 0.308 3.692 14 N -0.457 5.457 15 C 0.049 3.951 16 C -0.122 4.122 17 C -0.126 4.126 18 C 0.069 3.931 19 H 0.105 0.895 20 C -0.086 4.086 21 C -0.105 4.105 22 C -0.095 4.095 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.118 4.118 27 N -0.493 5.493 28 H 0.274 0.726 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.065 0.935 49 H 0.048 0.952 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.749 0.809 5.011 6.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.471 4.471 8 H 0.098 0.902 9 C 0.155 3.845 10 C -0.311 4.311 11 C -0.075 4.075 12 C -0.331 4.331 13 C 0.071 3.929 14 N -0.177 5.177 15 C -0.078 4.078 16 C -0.160 4.160 17 C -0.164 4.164 18 C -0.039 4.039 19 H 0.123 0.877 20 C -0.124 4.124 21 C -0.142 4.142 22 C -0.113 4.113 23 C -0.153 4.153 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.156 4.156 27 N -0.211 5.211 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.296 1.420 5.696 7.274 hybrid contribution 0.832 0.183 -0.818 1.181 sum -3.464 1.604 4.878 6.194 Atomic orbital electron populations 1.69835 1.07146 1.28147 1.30597 1.25792 0.94624 1.00381 0.92662 0.86631 0.80506 0.81179 0.80021 1.19222 1.20292 1.18532 1.19366 0.95046 0.89583 1.43142 0.90184 1.18246 0.87654 0.91752 0.86838 1.21713 1.01919 0.93867 1.13609 1.20726 0.94016 0.96644 0.96158 1.20720 0.98979 0.96165 1.17246 1.19851 0.91284 0.90283 0.91519 1.62587 1.00043 1.19798 1.35305 1.22930 0.90512 0.99932 0.94396 1.22270 0.96768 0.97629 0.99318 1.22426 0.96939 0.97270 0.99776 1.22712 0.91328 0.89799 1.00033 0.87675 1.21331 0.97343 0.98481 0.95223 1.22250 0.93047 1.04233 0.94706 1.21920 0.94818 0.95249 0.99352 1.22427 0.96440 0.96558 0.99869 1.22490 0.96000 0.98993 0.98785 1.22342 0.97095 0.96872 0.99776 1.22162 0.95750 0.95620 1.02058 1.68769 1.09638 1.25095 1.17551 0.91470 0.88573 0.88747 0.88852 0.90785 0.93618 0.91665 0.91893 0.91944 0.92002 0.93883 0.93400 0.87223 0.91400 0.93089 0.91553 0.92857 0.92355 0.92555 0.92786 0.91655 0.93362 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -17.49 9.85 55.55 0.55 -16.95 16 2 C 0.09 2.09 4.72 -17.35 -0.08 2.01 16 3 Si 0.89 17.90 29.57 -169.99 -5.03 12.87 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 7 C -0.44 -10.93 9.12 -37.74 -0.34 -11.28 16 8 H 0.08 1.93 7.86 -52.49 -0.41 1.51 16 9 C 0.28 7.15 6.41 -85.00 -0.54 6.60 16 10 C -0.29 -6.89 9.83 -38.65 -0.38 -7.27 16 11 C -0.05 -1.13 10.15 -39.39 -0.40 -1.53 16 12 C -0.31 -6.90 9.54 -38.87 -0.37 -7.27 16 13 C 0.31 7.10 4.71 -155.31 -0.73 6.36 16 14 N -0.46 -9.29 5.08 -161.35 -0.82 -10.11 16 15 C 0.05 0.87 6.04 -2.19 -0.01 0.86 16 16 C -0.12 -1.78 7.00 -25.35 -0.18 -1.96 16 17 C -0.13 -1.99 6.55 -25.35 -0.17 -2.15 16 18 C 0.07 1.33 2.32 -66.07 -0.15 1.18 16 19 H 0.11 2.37 6.41 -51.93 -0.33 2.04 16 20 C -0.09 -1.62 4.66 -26.73 -0.12 -1.75 16 21 C -0.11 -2.17 2.69 -26.73 -0.07 -2.24 16 22 C -0.09 -1.71 2.93 -89.50 -0.26 -1.97 16 23 C -0.12 -1.87 5.53 -25.07 -0.14 -2.01 16 24 C -0.13 -1.84 6.91 -24.74 -0.17 -2.01 16 25 C -0.12 -2.00 6.83 -25.07 -0.17 -2.17 16 26 C -0.12 -2.13 6.46 -25.61 -0.17 -2.29 16 27 N -0.49 -11.97 2.48 -10.33 -0.03 -12.00 16 28 H 0.27 6.11 8.29 -40.82 -0.34 5.77 16 29 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 30 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 31 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.88 7.98 -51.92 -0.41 0.46 16 34 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.92 7.86 -51.93 -0.41 0.52 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.84 7.51 -51.93 -0.39 0.45 16 40 H 0.11 2.52 4.92 -51.93 -0.26 2.26 16 41 H 0.07 1.62 5.31 -51.93 -0.28 1.34 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.16 7.76 -51.93 -0.40 0.76 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.08 1.58 7.67 -51.93 -0.40 1.19 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -24.90 374.14 -12.92 -37.82 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -8.77 Total: 11.62 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -4.47 Total: -28.88 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.30 Total: -39.06 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -24.90 -12.92 -37.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116661567.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.124 kcal (2) G-P(sol) polarization free energy of solvation -24.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds