Wall clock time and date at job start Tue Mar 31 2020 11:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86802 * 119.99804 * 2 1 4 4 H 1.48503 * 109.47001 * 240.00235 * 3 2 1 5 5 H 1.48499 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47368 * 120.00521 * 3 2 1 7 7 C 1.40028 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00004 * 170.72680 * 7 2 1 9 9 C 1.41316 * 119.99480 * 350.72633 * 7 2 1 10 10 C 1.40590 * 119.78246 * 161.94439 * 9 7 2 11 11 C 1.38349 * 119.14890 * 179.97438 * 10 9 7 12 12 C 1.38639 * 118.67960 * 359.75050 * 11 10 9 13 13 C 1.39754 * 119.48809 * 0.47872 * 12 11 10 14 14 N 1.38831 * 119.58348 * 179.79114 * 13 12 11 15 15 C 1.48554 * 110.99841 * 295.14491 * 14 13 12 16 16 C 1.54379 * 104.59302 * 200.96058 * 15 14 13 17 17 C 1.54256 * 105.06336 * 23.84759 * 16 15 14 18 18 C 1.48559 * 111.00105 * 179.72053 * 14 13 12 19 19 H 1.08998 * 110.51102 * 40.21011 * 18 14 13 20 20 C 1.52998 * 110.40938 * 277.81670 * 18 14 13 21 21 C 1.53001 * 109.47222 * 68.38039 * 20 18 14 22 22 C 1.52998 * 109.47222 * 179.97438 * 21 20 18 23 23 C 1.54270 * 110.02973 * 292.16082 * 22 21 20 24 24 C 1.54886 * 104.19625 * 217.10794 * 23 22 21 25 25 C 1.54893 * 102.75049 * 37.94237 * 24 23 22 26 26 C 1.53872 * 110.03443 * 174.99767 * 22 21 20 27 27 N 1.31979 * 120.83533 * 359.50443 * 13 12 11 28 28 H 0.96998 * 120.00158 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.42337 * 0.02562 * 10 9 7 30 30 H 1.08004 * 120.65704 * 180.02562 * 11 10 9 31 31 H 1.07997 * 120.25280 * 180.26298 * 12 11 10 32 32 H 1.08995 * 110.41571 * 82.17797 * 15 14 13 33 33 H 1.09010 * 110.50845 * 319.78479 * 15 14 13 34 34 H 1.09009 * 110.32111 * 264.94825 * 16 15 14 35 35 H 1.09002 * 110.32363 * 142.74692 * 16 15 14 36 36 H 1.09004 * 110.32293 * 241.10666 * 17 16 15 37 37 H 1.08996 * 110.41219 * 118.94342 * 17 16 15 38 38 H 1.08993 * 109.47537 * 308.37423 * 20 18 14 39 39 H 1.09005 * 109.46795 * 188.37500 * 20 18 14 40 40 H 1.08993 * 109.47367 * 59.99280 * 21 20 18 41 41 H 1.09005 * 109.46796 * 299.99460 * 21 20 18 42 42 H 1.08998 * 110.02039 * 53.60035 * 22 21 20 43 43 H 1.09003 * 110.48229 * 335.78703 * 23 22 21 44 44 H 1.09000 * 110.48818 * 98.42949 * 23 22 21 45 45 H 1.09000 * 110.75636 * 279.62597 * 24 23 22 46 46 H 1.09002 * 110.91273 * 156.32792 * 24 23 22 47 47 H 1.08994 * 110.48434 * 203.38026 * 25 24 23 48 48 H 1.08996 * 110.59791 * 80.79144 * 25 24 23 49 49 H 1.08997 * 110.03313 * 238.56609 * 26 22 21 50 50 H 1.09004 * 110.03191 * 359.94831 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2126 5 1 1.2763 2.7465 0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 3.0770 -1.2186 -0.1513 9 6 1.3149 -2.4285 0.1961 10 6 1.9179 -3.6435 -0.1736 11 6 1.2281 -4.8262 0.0253 12 6 -0.0371 -4.7717 0.5896 13 6 -0.5849 -3.5324 0.9318 14 7 -1.8534 -3.4752 1.4930 15 6 -2.8828 -3.9460 0.5310 16 6 -4.2048 -3.3389 1.0479 17 6 -3.7838 -2.1061 1.8740 18 6 -2.2429 -2.0719 1.7867 19 1 -1.9222 -1.4102 0.9822 20 6 -1.6429 -1.6195 3.1195 21 6 -0.1231 -1.5081 2.9830 22 6 0.4769 -1.0551 4.3155 23 6 0.0560 0.3980 4.6176 24 6 1.3063 1.0252 5.2826 25 6 2.4724 0.3918 4.4836 26 6 2.0132 -1.0590 4.2304 27 7 0.0907 -2.4161 0.7335 28 1 -0.4850 0.8400 0.0004 29 1 2.9073 -3.6535 -0.6067 30 1 1.6683 -5.7734 -0.2495 31 1 -0.5964 -5.6797 0.7601 32 1 -2.9372 -5.0346 0.5350 33 1 -2.6634 -3.5808 -0.4723 34 1 -4.7297 -4.0563 1.6789 35 1 -4.8352 -3.0370 0.2115 36 1 -4.1020 -2.2183 2.9105 37 1 -4.2075 -1.1982 1.4448 38 1 -1.8858 -2.3477 3.8932 39 1 -2.0553 -0.6481 3.3924 40 1 0.1199 -0.7800 2.2092 41 1 0.2893 -2.4796 2.7100 42 1 0.1457 -1.7149 5.1174 43 1 -0.1896 0.9237 3.6949 44 1 -0.7904 0.4151 5.3043 45 1 1.3640 0.7482 6.3352 46 1 1.3046 2.1093 5.1695 47 1 3.3894 0.4044 5.0726 48 1 2.6193 0.9159 3.5393 49 1 2.4277 -1.7200 4.9915 50 1 2.3315 -1.3845 3.2400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116661567.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:32 Heat of formation + Delta-G solvation = 23.015550 kcal Electronic energy + Delta-G solvation = -28642.019018 eV Core-core repulsion = 25246.960563 eV Total energy + Delta-G solvation = -3395.058456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25670 -39.15599 -38.76943 -35.52302 -34.23616 -33.36202 -32.16282 -30.37525 -29.93995 -29.50042 -27.27020 -26.93309 -23.99518 -23.50630 -22.68549 -21.48013 -21.45649 -20.59062 -20.23502 -19.22947 -17.79928 -16.70742 -16.62355 -16.55843 -16.16788 -16.10830 -15.82121 -15.40478 -14.90999 -14.39255 -14.37622 -14.17493 -14.02469 -13.70804 -13.39081 -13.26464 -13.02572 -12.87919 -12.76815 -12.59579 -12.42056 -12.24960 -12.13639 -12.03523 -11.93600 -11.91458 -11.84089 -11.72458 -11.45202 -11.29248 -11.26924 -11.11301 -10.77823 -10.73745 -10.30477 -9.76175 -9.24959 -8.66519 -8.37927 -6.38029 0.92907 1.20496 1.39470 1.46366 1.51638 2.23325 2.81850 3.20457 3.72195 3.82973 3.84895 3.87915 3.94260 4.02612 4.21517 4.32815 4.41130 4.53717 4.58469 4.60964 4.63960 4.70061 4.72386 4.81352 4.82864 4.84400 4.86066 4.94228 4.95050 4.97699 5.03957 5.04502 5.09337 5.15284 5.18243 5.23123 5.27576 5.31144 5.33453 5.38580 5.44518 5.50809 5.61099 5.69989 5.72101 5.81475 5.92955 5.97389 6.10064 6.29998 6.35240 6.60123 6.86823 7.13017 8.18232 8.47628 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010461 B = 0.006981 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.899792 B = 4010.054726 C = 4951.310239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.060 3.940 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.468 4.468 8 H 0.075 0.925 9 C 0.254 3.746 10 C -0.317 4.317 11 C -0.049 4.049 12 C -0.317 4.317 13 C 0.295 3.705 14 N -0.460 5.460 15 C 0.046 3.954 16 C -0.111 4.111 17 C -0.120 4.120 18 C 0.064 3.936 19 H 0.070 0.930 20 C -0.079 4.079 21 C -0.093 4.093 22 C -0.095 4.095 23 C -0.111 4.111 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.118 4.118 27 N -0.495 5.495 28 H 0.279 0.721 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.021 0.979 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.029 0.971 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.060 0.940 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 1.461 6.764 8.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.162 4.162 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.500 4.500 8 H 0.093 0.907 9 C 0.127 3.873 10 C -0.340 4.340 11 C -0.074 4.074 12 C -0.341 4.341 13 C 0.057 3.943 14 N -0.180 5.180 15 C -0.081 4.081 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.043 4.043 19 H 0.088 0.912 20 C -0.117 4.117 21 C -0.130 4.130 22 C -0.113 4.113 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.160 4.160 26 C -0.156 4.156 27 N -0.212 5.212 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.040 0.960 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.078 0.922 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.847 2.060 7.442 9.686 hybrid contribution 1.298 -0.124 -1.375 1.895 sum -4.549 1.936 6.066 7.826 Atomic orbital electron populations 1.69902 1.08091 1.29010 1.30304 1.26347 0.95292 1.02607 0.91989 0.85744 0.79458 0.77717 0.79855 1.19005 1.19181 1.18464 1.19543 0.95026 0.90672 1.44743 0.90719 1.18625 0.88598 0.92579 0.87493 1.21874 1.02586 0.94418 1.15126 1.21043 0.93848 0.97333 0.95178 1.21020 0.99298 0.96726 1.17063 1.20289 0.92451 0.90341 0.91194 1.62639 0.99437 1.20407 1.35500 1.23045 0.91362 1.00852 0.92801 1.22267 0.95222 0.97308 1.00084 1.22400 0.93780 0.98421 1.01179 1.22688 0.94106 0.88616 0.98921 0.91179 1.21274 0.96013 0.99196 0.95174 1.21958 0.94366 1.01289 0.95432 1.21900 0.94584 0.96872 0.97981 1.22363 0.98053 0.94741 0.99685 1.22475 0.93810 0.99674 0.99392 1.22328 0.98927 0.95239 0.99507 1.22121 0.96109 0.97293 1.00055 1.68811 1.09248 1.25744 1.17387 0.91062 0.88251 0.85714 0.87149 0.89462 0.96023 0.89322 0.90035 0.90313 0.90992 0.93504 0.92052 0.89737 0.95287 0.92404 0.93429 0.90785 0.90175 0.91023 0.90706 0.93784 0.92169 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -37.10 9.85 21.84 0.22 -36.89 16 2 C 0.06 2.92 4.72 85.29 0.40 3.32 16 3 Si 0.95 37.62 29.57 68.60 2.03 39.65 16 4 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.47 -24.65 9.12 23.46 0.21 -24.44 16 8 H 0.07 3.84 7.86 -2.91 -0.02 3.82 16 9 C 0.25 13.61 6.41 40.19 0.26 13.87 16 10 C -0.32 -15.90 9.83 22.87 0.22 -15.68 16 11 C -0.05 -2.24 10.15 22.39 0.23 -2.01 16 12 C -0.32 -14.45 9.54 22.73 0.22 -14.23 16 13 C 0.30 13.99 4.71 133.40 0.63 14.62 16 14 N -0.46 -18.68 5.08 -664.39 -3.38 -22.06 16 15 C 0.05 1.58 6.04 86.45 0.52 2.10 16 16 C -0.11 -2.94 7.00 31.49 0.22 -2.72 16 17 C -0.12 -3.50 6.55 31.49 0.21 -3.30 16 18 C 0.06 2.48 2.32 45.06 0.10 2.59 16 19 H 0.07 3.25 6.41 -2.39 -0.02 3.23 16 20 C -0.08 -2.95 4.66 30.59 0.14 -2.80 16 21 C -0.09 -3.94 2.69 30.59 0.08 -3.86 16 22 C -0.09 -3.40 2.93 -10.07 -0.03 -3.43 16 23 C -0.11 -3.41 5.53 31.67 0.18 -3.23 16 24 C -0.12 -3.11 6.91 31.89 0.22 -2.89 16 25 C -0.12 -3.86 6.83 31.67 0.22 -3.65 16 26 C -0.12 -4.31 6.46 31.32 0.20 -4.11 16 27 N -0.49 -25.17 2.48 -186.59 -0.46 -25.63 16 28 H 0.28 12.75 8.29 -92.71 -0.77 11.99 16 29 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 30 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 31 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 32 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.02 0.83 7.98 -2.38 -0.02 0.81 16 34 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 36 H 0.08 2.06 7.86 -2.39 -0.02 2.05 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 2.10 7.51 -2.38 -0.02 2.08 16 40 H 0.08 4.06 4.92 -2.39 -0.01 4.04 16 41 H 0.03 1.44 5.31 -2.38 -0.01 1.43 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.05 1.64 7.76 -2.39 -0.02 1.62 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.03 1.56 7.67 -2.38 -0.02 1.54 16 Total: -1.00 -57.13 374.14 3.53 -53.60 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: 0.89 Total: 41.17 kcal Atomic # 6 Polarization: -54.07 SS G_CDS: 4.23 Total: -49.84 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -3.62 Total: -84.57 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -57.13 3.53 -53.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116661567.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.611 kcal (2) G-P(sol) polarization free energy of solvation -57.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds