Wall clock time and date at job start Tue Mar 31 2020 11:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86800 * 119.99770 * 2 1 4 4 H 1.48505 * 109.46990 * 269.99755 * 3 2 1 5 5 H 1.48499 * 109.47411 * 29.99681 * 3 2 1 6 6 H 1.48498 * 109.47294 * 149.99991 * 3 2 1 7 7 C 1.37867 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00534 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99810 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.53700 * 60.10286 * 9 7 2 11 11 C 1.53116 * 109.50167 * 299.99585 * 9 7 2 12 12 C 1.53116 * 109.15937 * 182.40518 * 11 9 7 13 13 C 1.53031 * 109.28035 * 57.65908 * 12 11 9 14 14 N 1.46853 * 109.52166 * 300.81901 * 13 12 11 15 15 C 1.46900 * 110.99898 * 185.83582 * 14 13 12 16 16 C 1.50704 * 109.47140 * 66.04688 * 15 14 13 17 17 C 1.38122 * 120.03981 * 262.47699 * 16 15 14 18 18 C 1.38260 * 120.07373 * 179.76949 * 17 16 15 19 19 C 1.38304 * 120.15132 * 0.50075 * 18 17 16 20 20 C 1.38088 * 120.07626 * 359.75139 * 19 18 17 21 21 C 1.38890 * 120.03539 * 82.74678 * 16 15 14 22 22 N 1.39675 * 120.07578 * 0.02562 * 21 16 15 23 23 C 1.48536 * 111.00205 * 176.32827 * 22 21 16 24 24 C 1.54935 * 103.22653 * 159.72103 * 23 22 21 25 25 C 1.54594 * 102.92525 * 322.58717 * 24 23 22 26 26 C 1.47903 * 111.00182 * 293.72545 * 22 21 16 27 27 C 1.46847 * 111.19301 * 61.74250 * 14 13 12 28 28 H 0.96998 * 119.99703 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.51818 * 62.50130 * 11 9 7 30 30 H 1.08998 * 109.57997 * 302.34509 * 11 9 7 31 31 H 1.08998 * 109.50837 * 297.71523 * 12 11 9 32 32 H 1.09009 * 109.50222 * 177.60129 * 12 11 9 33 33 H 1.09001 * 109.46196 * 60.83658 * 13 12 11 34 34 H 1.09001 * 109.46801 * 180.80099 * 13 12 11 35 35 H 1.09000 * 109.46790 * 186.04848 * 15 14 13 36 36 H 1.08997 * 109.47470 * 306.04915 * 15 14 13 37 37 H 1.08003 * 119.95977 * 359.97438 * 17 16 15 38 38 H 1.08003 * 119.92275 * 180.26887 * 18 17 16 39 39 H 1.08000 * 119.96627 * 179.72444 * 19 18 17 40 40 H 1.07990 * 120.03937 * 180.02562 * 20 19 18 41 41 H 1.08999 * 110.66570 * 278.15883 * 23 22 21 42 42 H 1.08998 * 110.66449 * 41.28542 * 23 22 21 43 43 H 1.09000 * 110.72481 * 204.22557 * 24 23 22 44 44 H 1.09001 * 110.87256 * 81.01861 * 24 23 22 45 45 H 1.09001 * 110.30705 * 263.04360 * 25 24 23 46 46 H 1.08999 * 110.30795 * 140.86996 * 25 24 23 47 47 H 1.09002 * 109.91483 * 333.51069 * 26 22 21 48 48 H 1.08997 * 109.91765 * 94.60114 * 26 22 21 49 49 H 1.09004 * 109.45644 * 178.24042 * 27 14 13 50 50 H 1.08993 * 109.45859 * 58.27207 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8758 -0.6817 0.8917 11 6 4.0232 -0.4727 -1.2488 12 6 5.5532 -0.5296 -1.2710 13 6 6.0050 -1.9913 -1.2386 14 7 5.4908 -2.6370 -0.0240 15 6 6.0188 -4.0013 0.1107 16 6 7.5075 -3.9437 0.3379 17 6 8.3760 -4.1193 -0.7216 18 6 9.7418 -4.0619 -0.5147 19 6 10.2434 -3.8388 0.7547 20 6 9.3808 -3.6676 1.8194 21 6 8.0077 -3.7195 1.6141 22 7 7.1324 -3.5477 2.6889 23 6 7.8781 -3.4102 3.9661 24 6 6.8531 -2.7232 4.9029 25 6 6.1269 -1.7384 3.9580 26 6 6.3511 -2.3005 2.5420 27 6 4.0225 -2.6365 -0.0034 28 1 -0.4849 0.8401 -0.0004 29 1 3.6976 0.5674 -1.2281 30 1 3.6276 -0.9604 -2.1397 31 1 5.9495 -0.0068 -0.4006 32 1 5.9219 -0.0548 -2.1804 33 1 5.6199 -2.5100 -2.1165 34 1 7.0941 -2.0350 -1.2399 35 1 5.5407 -4.4939 0.9574 36 1 5.8118 -4.5626 -0.8005 37 1 7.9876 -4.2984 -1.7134 38 1 10.4186 -4.1952 -1.3457 39 1 11.3108 -3.7990 0.9137 40 1 9.7731 -3.4931 2.8103 41 1 8.1589 -4.3891 4.3548 42 1 8.7583 -2.7816 3.8318 43 1 7.3617 -2.1857 5.7032 44 1 6.1532 -3.4511 5.3132 45 1 6.5618 -0.7425 4.0429 46 1 5.0621 -1.7081 4.1889 47 1 6.9083 -1.5818 1.9410 48 1 5.3931 -2.5160 2.0689 49 1 3.6718 -3.1488 0.8925 50 1 3.6468 -3.1522 -0.8871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138611430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:13 Heat of formation + Delta-G solvation = 47.999670 kcal Electronic energy + Delta-G solvation = -27960.834975 eV Core-core repulsion = 24566.859912 eV Total energy + Delta-G solvation = -3393.975063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54475 -38.34105 -37.58423 -34.24457 -32.62270 -32.24266 -30.85097 -30.24001 -28.78567 -28.35487 -25.87686 -24.91324 -23.21850 -22.63410 -21.55976 -21.14273 -20.47665 -19.90878 -18.80221 -17.27910 -16.70859 -16.03302 -15.69919 -15.42277 -15.30715 -14.53353 -14.28368 -14.24992 -13.80819 -13.58912 -13.39226 -13.13435 -12.92489 -12.84612 -12.61580 -12.24338 -12.17931 -12.06407 -11.84942 -11.62972 -11.23086 -11.15416 -11.07872 -10.99905 -10.96772 -10.81793 -10.47570 -10.37209 -10.05048 -9.95264 -9.68728 -9.31491 -9.09874 -8.91943 -8.76893 -8.50360 -7.84802 -7.69588 -6.05947 -4.04899 1.40129 1.43234 3.28888 3.40034 3.42843 3.68917 4.05826 4.43053 4.53534 4.68949 4.74674 4.86861 4.93163 5.05171 5.09546 5.25900 5.30892 5.37373 5.44337 5.50926 5.54739 5.60458 5.65383 5.74040 5.77207 5.83174 5.89408 5.93046 5.95877 6.01987 6.03731 6.15748 6.19435 6.29048 6.32943 6.34030 6.37068 6.48377 6.52250 6.58483 6.60398 6.69469 6.81394 6.85208 6.87457 7.08160 7.21894 7.41635 7.45716 7.62609 7.65348 7.87868 8.53404 8.97741 9.57092 11.07372 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.004685 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.035842 B = 5974.624095 C = 6958.180607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.071 3.929 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.023 3.977 10 H 0.034 0.966 11 C -0.122 4.122 12 C -0.118 4.118 13 C 0.060 3.940 14 N -0.532 5.532 15 C 0.095 3.905 16 C -0.082 4.082 17 C -0.095 4.095 18 C -0.148 4.148 19 C -0.102 4.102 20 C -0.177 4.177 21 C 0.124 3.876 22 N -0.472 5.472 23 C 0.027 3.973 24 C -0.123 4.123 25 C -0.137 4.137 26 C 0.050 3.950 27 C 0.075 3.925 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.027 0.973 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.035 0.965 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.053 0.947 48 H 0.117 0.883 49 H 0.068 0.932 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.791 -6.686 3.838 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.090 0.910 9 C 0.004 3.996 10 H 0.053 0.947 11 C -0.160 4.160 12 C -0.156 4.156 13 C -0.067 4.067 14 N -0.257 5.257 15 C -0.032 4.032 16 C -0.084 4.084 17 C -0.114 4.114 18 C -0.167 4.167 19 C -0.121 4.121 20 C -0.197 4.197 21 C 0.025 3.975 22 N -0.187 5.187 23 C -0.100 4.100 24 C -0.161 4.161 25 C -0.176 4.176 26 C -0.074 4.074 27 C -0.052 4.052 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.071 0.929 48 H 0.135 0.865 49 H 0.087 0.913 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 19.356 -6.739 4.292 20.940 hybrid contribution 0.689 1.109 -0.895 1.583 sum 20.045 -5.630 3.397 21.096 Atomic orbital electron populations 1.69906 1.06302 1.26873 1.51008 1.24969 0.94623 0.98962 0.94455 0.86843 0.79976 0.83583 0.77809 1.20829 1.22725 1.18841 1.21002 0.88817 0.94439 1.50851 0.90966 1.19141 0.95865 0.91026 0.93607 0.94746 1.22023 0.92635 1.00137 1.01158 1.21633 0.98003 0.95324 1.00596 1.22030 0.98904 0.95244 0.90569 1.62253 1.09998 1.15973 1.37442 1.20936 0.90574 0.90758 1.00978 1.19513 0.95641 1.01530 0.91726 1.20954 0.93114 0.99230 0.98142 1.20975 0.95174 1.03565 0.96954 1.20917 0.99059 0.99389 0.92757 1.21378 0.92832 1.05678 0.99824 1.18865 0.90387 0.97074 0.91127 1.61915 1.20713 1.35593 1.00521 1.23442 0.96074 1.00651 0.89800 1.22476 0.97873 0.98496 0.97278 1.22522 1.01672 0.98415 0.94958 1.23262 1.00663 0.87682 0.95797 1.22121 0.83544 0.99640 0.99890 0.92734 0.93692 0.92612 0.92093 0.93022 0.95511 0.91702 0.89268 0.94702 0.86337 0.86570 0.86594 0.85686 0.90097 0.92666 0.91277 0.90733 0.91831 0.90516 0.92890 0.86516 0.91344 0.95473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 2 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 3 Si 0.89 21.95 24.35 -169.99 -4.14 17.82 16 4 H -0.28 -6.83 6.89 56.52 0.39 -6.44 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.26 -6.25 6.53 56.52 0.37 -5.88 16 7 C -0.51 -14.05 9.15 -34.44 -0.31 -14.36 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 9 C 0.02 0.52 1.85 -91.69 -0.17 0.35 16 10 H 0.03 0.82 7.21 -51.93 -0.37 0.44 16 11 C -0.12 -2.59 4.73 -26.61 -0.13 -2.72 16 12 C -0.12 -2.06 6.09 -26.66 -0.16 -2.23 16 13 C 0.06 0.96 5.24 -3.83 -0.02 0.94 16 14 N -0.53 -8.72 2.09 -236.11 -0.49 -9.21 16 15 C 0.09 1.39 4.09 -4.97 -0.02 1.37 16 16 C -0.08 -1.12 4.57 -104.42 -0.48 -1.60 16 17 C -0.10 -1.17 8.38 -39.62 -0.33 -1.50 16 18 C -0.15 -1.63 10.04 -39.55 -0.40 -2.03 16 19 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 20 C -0.18 -2.11 8.91 -39.38 -0.35 -2.46 16 21 C 0.12 1.68 5.23 -83.79 -0.44 1.24 16 22 N -0.47 -6.37 4.68 -167.16 -0.78 -7.15 16 23 C 0.03 0.30 5.56 -1.90 -0.01 0.29 16 24 C -0.12 -1.30 7.06 -24.87 -0.18 -1.48 16 25 C -0.14 -1.76 6.93 -25.37 -0.18 -1.93 16 26 C 0.05 0.74 4.77 -2.75 -0.01 0.72 16 27 C 0.07 1.45 3.96 -3.83 -0.02 1.43 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.04 1.02 3.34 -51.93 -0.17 0.85 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.96 6.19 -51.93 -0.32 0.64 16 35 H 0.09 1.37 7.35 -51.93 -0.38 0.99 16 36 H 0.03 0.50 8.01 -51.93 -0.42 0.08 16 37 H 0.12 1.31 8.05 -52.48 -0.42 0.89 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.13 1.29 5.57 -52.49 -0.29 1.00 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.57 5.95 -51.93 -0.31 0.27 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.85 7.72 -51.93 -0.40 0.45 16 48 H 0.12 1.96 4.73 -51.93 -0.25 1.71 16 49 H 0.07 1.33 7.66 -51.93 -0.40 0.93 16 50 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 363.27 15.07 5.47 5.47 Total: -1.00 -29.20 363.27 -11.27 -40.47 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -8.41 Total: 2.81 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -3.69 Total: -23.53 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -0.50 Total: -43.05 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.20 -11.27 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138611430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.468 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds