Wall clock time and date at job start Tue Mar 31 2020 11:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86800 * 119.99770 * 2 1 4 4 H 1.48505 * 109.46990 * 269.99755 * 3 2 1 5 5 H 1.48499 * 109.47411 * 29.99681 * 3 2 1 6 6 H 1.48498 * 109.47294 * 149.99991 * 3 2 1 7 7 C 1.37867 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00534 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99810 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.53700 * 60.10286 * 9 7 2 11 11 C 1.53116 * 109.50167 * 299.99585 * 9 7 2 12 12 C 1.53116 * 109.15937 * 182.40518 * 11 9 7 13 13 C 1.53031 * 109.28035 * 57.65908 * 12 11 9 14 14 N 1.46853 * 109.52166 * 300.81901 * 13 12 11 15 15 C 1.46900 * 110.99898 * 185.83582 * 14 13 12 16 16 C 1.50704 * 109.47140 * 66.04688 * 15 14 13 17 17 C 1.38122 * 120.03981 * 262.47699 * 16 15 14 18 18 C 1.38260 * 120.07373 * 179.76949 * 17 16 15 19 19 C 1.38304 * 120.15132 * 0.50075 * 18 17 16 20 20 C 1.38088 * 120.07626 * 359.75139 * 19 18 17 21 21 C 1.38890 * 120.03539 * 82.74678 * 16 15 14 22 22 N 1.39675 * 120.07578 * 0.02562 * 21 16 15 23 23 C 1.48536 * 111.00205 * 176.32827 * 22 21 16 24 24 C 1.54935 * 103.22653 * 159.72103 * 23 22 21 25 25 C 1.54594 * 102.92525 * 322.58717 * 24 23 22 26 26 C 1.47903 * 111.00182 * 293.72545 * 22 21 16 27 27 C 1.46847 * 111.19301 * 61.74250 * 14 13 12 28 28 H 0.96998 * 119.99703 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.51818 * 62.50130 * 11 9 7 30 30 H 1.08998 * 109.57997 * 302.34509 * 11 9 7 31 31 H 1.08998 * 109.50837 * 297.71523 * 12 11 9 32 32 H 1.09009 * 109.50222 * 177.60129 * 12 11 9 33 33 H 1.09001 * 109.46196 * 60.83658 * 13 12 11 34 34 H 1.09001 * 109.46801 * 180.80099 * 13 12 11 35 35 H 1.09000 * 109.46790 * 186.04848 * 15 14 13 36 36 H 1.08997 * 109.47470 * 306.04915 * 15 14 13 37 37 H 1.08003 * 119.95977 * 359.97438 * 17 16 15 38 38 H 1.08003 * 119.92275 * 180.26887 * 18 17 16 39 39 H 1.08000 * 119.96627 * 179.72444 * 19 18 17 40 40 H 1.07990 * 120.03937 * 180.02562 * 20 19 18 41 41 H 1.08999 * 110.66570 * 278.15883 * 23 22 21 42 42 H 1.08998 * 110.66449 * 41.28542 * 23 22 21 43 43 H 1.09000 * 110.72481 * 204.22557 * 24 23 22 44 44 H 1.09001 * 110.87256 * 81.01861 * 24 23 22 45 45 H 1.09001 * 110.30705 * 263.04360 * 25 24 23 46 46 H 1.08999 * 110.30795 * 140.86996 * 25 24 23 47 47 H 1.09002 * 109.91483 * 333.51069 * 26 22 21 48 48 H 1.08997 * 109.91765 * 94.60114 * 26 22 21 49 49 H 1.09004 * 109.45644 * 178.24042 * 27 14 13 50 50 H 1.08993 * 109.45859 * 58.27207 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8758 -0.6817 0.8917 11 6 4.0232 -0.4727 -1.2488 12 6 5.5532 -0.5296 -1.2710 13 6 6.0050 -1.9913 -1.2386 14 7 5.4908 -2.6370 -0.0240 15 6 6.0188 -4.0013 0.1107 16 6 7.5075 -3.9437 0.3379 17 6 8.3760 -4.1193 -0.7216 18 6 9.7418 -4.0619 -0.5147 19 6 10.2434 -3.8388 0.7547 20 6 9.3808 -3.6676 1.8194 21 6 8.0077 -3.7195 1.6141 22 7 7.1324 -3.5477 2.6889 23 6 7.8781 -3.4102 3.9661 24 6 6.8531 -2.7232 4.9029 25 6 6.1269 -1.7384 3.9580 26 6 6.3511 -2.3005 2.5420 27 6 4.0225 -2.6365 -0.0034 28 1 -0.4849 0.8401 -0.0004 29 1 3.6976 0.5674 -1.2281 30 1 3.6276 -0.9604 -2.1397 31 1 5.9495 -0.0068 -0.4006 32 1 5.9219 -0.0548 -2.1804 33 1 5.6199 -2.5100 -2.1165 34 1 7.0941 -2.0350 -1.2399 35 1 5.5407 -4.4939 0.9574 36 1 5.8118 -4.5626 -0.8005 37 1 7.9876 -4.2984 -1.7134 38 1 10.4186 -4.1952 -1.3457 39 1 11.3108 -3.7990 0.9137 40 1 9.7731 -3.4931 2.8103 41 1 8.1589 -4.3891 4.3548 42 1 8.7583 -2.7816 3.8318 43 1 7.3617 -2.1857 5.7032 44 1 6.1532 -3.4511 5.3132 45 1 6.5618 -0.7425 4.0429 46 1 5.0621 -1.7081 4.1889 47 1 6.9083 -1.5818 1.9410 48 1 5.3931 -2.5160 2.0689 49 1 3.6718 -3.1488 0.8925 50 1 3.6468 -3.1522 -0.8871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138611430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:12 Heat of formation + Delta-G solvation = 32.627767 kcal Electronic energy + Delta-G solvation = -27961.501551 eV Core-core repulsion = 24566.859912 eV Total energy + Delta-G solvation = -3394.641639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54359 -39.75500 -38.54375 -35.82789 -34.20344 -33.44139 -32.09796 -31.87141 -29.76606 -29.30927 -27.11150 -26.82801 -24.13490 -24.00634 -23.04625 -22.32270 -21.42886 -21.00243 -20.36640 -18.83253 -18.17575 -17.25910 -17.03092 -16.44481 -16.30693 -16.07531 -15.62034 -15.33018 -15.28841 -15.01266 -14.79341 -14.56395 -14.18305 -13.99305 -13.85034 -13.72911 -13.49338 -13.04440 -12.93849 -12.87341 -12.74806 -12.67995 -12.36501 -12.13622 -12.04903 -11.92562 -11.91023 -11.77117 -11.71023 -11.44810 -11.30446 -10.99798 -10.79078 -10.61020 -10.28405 -9.69886 -9.10846 -8.73332 -8.29228 -6.32190 0.48987 0.53077 1.29821 1.35945 1.46898 2.33041 2.74117 3.04968 3.07032 3.31734 3.77321 3.83309 3.89356 3.98588 4.05510 4.11907 4.14976 4.23988 4.29948 4.37989 4.43911 4.46864 4.54131 4.63034 4.64154 4.70955 4.74770 4.77258 4.82165 4.83936 4.94550 4.96434 4.99128 5.02817 5.06035 5.10663 5.14815 5.21666 5.23607 5.29675 5.41681 5.45794 5.55669 5.60707 5.64958 5.69457 5.74376 5.94671 6.12345 6.18047 6.26269 6.37627 6.50948 6.75366 7.33423 8.87796 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.004685 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.035842 B = 5974.624095 C = 6958.180607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.016 3.984 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.301 1.301 6 H -0.247 1.247 7 C -0.516 4.516 8 H 0.032 0.968 9 C 0.027 3.973 10 H 0.026 0.974 11 C -0.121 4.121 12 C -0.111 4.111 13 C 0.064 3.936 14 N -0.527 5.527 15 C 0.103 3.897 16 C -0.101 4.101 17 C -0.101 4.101 18 C -0.147 4.147 19 C -0.100 4.100 20 C -0.181 4.181 21 C 0.106 3.894 22 N -0.484 5.484 23 C 0.029 3.971 24 C -0.116 4.116 25 C -0.140 4.140 26 C 0.059 3.941 27 C 0.090 3.910 28 H 0.265 0.735 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.089 0.911 49 H 0.058 0.942 50 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.016 -6.310 3.782 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.181 4.181 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.229 1.229 6 H -0.171 1.171 7 C -0.554 4.554 8 H 0.050 0.950 9 C 0.007 3.993 10 H 0.044 0.956 11 C -0.159 4.159 12 C -0.148 4.148 13 C -0.064 4.064 14 N -0.252 5.252 15 C -0.024 4.024 16 C -0.103 4.103 17 C -0.120 4.120 18 C -0.165 4.165 19 C -0.119 4.119 20 C -0.201 4.201 21 C 0.008 3.992 22 N -0.200 5.200 23 C -0.098 4.098 24 C -0.154 4.154 25 C -0.178 4.178 26 C -0.066 4.066 27 C -0.038 4.038 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.146 0.854 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.055 0.945 48 H 0.107 0.893 49 H 0.076 0.924 50 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 23.613 -6.386 4.233 24.824 hybrid contribution -0.623 0.863 -0.872 1.376 sum 22.990 -5.522 3.361 23.881 Atomic orbital electron populations 1.70054 1.08180 1.27897 1.53032 1.25792 0.95305 1.02769 0.94266 0.85831 0.79145 0.78862 0.78487 1.19572 1.22893 1.17087 1.21325 0.91514 0.92876 1.49716 0.94973 1.19010 0.92712 0.93315 0.94220 0.95563 1.21916 0.95681 0.98761 0.99501 1.21586 0.94720 0.96598 1.01922 1.22044 0.99933 0.94215 0.90200 1.62202 1.07506 1.17503 1.37943 1.20828 0.91750 0.89380 1.00478 1.19470 0.94683 1.03469 0.92687 1.21121 0.93721 0.99084 0.98098 1.21303 0.94916 1.02341 0.97971 1.21296 1.00431 0.97836 0.92290 1.21615 0.92161 1.05275 1.01089 1.19045 0.91246 0.97941 0.91016 1.61869 1.21591 1.34868 1.01688 1.23520 0.96163 1.01516 0.88586 1.22465 0.97663 0.97947 0.97289 1.22517 1.01259 0.99377 0.94676 1.22999 0.99281 0.88017 0.96332 1.21768 0.85907 0.97226 0.98852 0.92646 0.94848 0.93386 0.92205 0.90317 0.95299 0.89714 0.90685 0.94378 0.85440 0.84066 0.83803 0.84153 0.88987 0.91617 0.88998 0.90981 0.91174 0.91877 0.94475 0.89325 0.92399 0.96682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.09 13.96 21.45 0.30 -59.80 16 2 C 0.02 0.91 5.45 84.65 0.46 1.37 16 3 Si 0.95 45.80 24.35 68.60 1.67 47.47 16 4 H -0.27 -12.43 6.89 99.48 0.69 -11.74 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.25 -11.14 6.53 99.48 0.65 -10.49 16 7 C -0.52 -29.55 9.15 25.60 0.23 -29.32 16 8 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 9 C 0.03 1.23 1.85 -11.49 -0.02 1.21 16 10 H 0.03 1.26 7.21 -2.39 -0.02 1.25 16 11 C -0.12 -5.06 4.73 30.67 0.15 -4.91 16 12 C -0.11 -3.62 6.09 30.64 0.19 -3.44 16 13 C 0.06 1.92 5.24 86.32 0.45 2.37 16 14 N -0.53 -17.20 2.09 -900.92 -1.88 -19.08 16 15 C 0.10 3.00 4.09 85.56 0.35 3.35 16 16 C -0.10 -2.61 4.57 -19.73 -0.09 -2.71 16 17 C -0.10 -2.21 8.38 22.25 0.19 -2.02 16 18 C -0.15 -2.68 10.04 22.29 0.22 -2.45 16 19 C -0.10 -1.77 10.04 22.25 0.22 -1.55 16 20 C -0.18 -3.76 8.91 22.40 0.20 -3.56 16 21 C 0.11 2.69 5.23 38.21 0.20 2.89 16 22 N -0.48 -12.63 4.68 -682.78 -3.19 -15.83 16 23 C 0.03 0.57 5.56 86.65 0.48 1.05 16 24 C -0.12 -2.25 7.06 31.80 0.22 -2.03 16 25 C -0.14 -3.52 6.93 31.47 0.22 -3.30 16 26 C 0.06 1.71 4.77 86.45 0.41 2.13 16 27 C 0.09 3.61 3.96 86.33 0.34 3.95 16 28 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.03 1.47 3.34 -2.38 -0.01 1.46 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 2.27 6.19 -2.39 -0.01 2.26 16 35 H 0.07 2.38 7.35 -2.39 -0.02 2.36 16 36 H 0.04 1.07 8.01 -2.39 -0.02 1.05 16 37 H 0.13 2.48 8.05 -2.91 -0.02 2.46 16 38 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.14 2.40 5.57 -2.92 -0.02 2.38 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.17 5.95 -2.39 -0.01 1.16 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.04 1.17 7.72 -2.39 -0.02 1.15 16 48 H 0.09 3.08 4.73 -2.39 -0.01 3.07 16 49 H 0.06 2.40 7.66 -2.38 -0.02 2.38 16 50 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -65.59 363.27 2.15 -63.44 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.83 Total: 20.77 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 4.43 Total: -36.98 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -4.78 Total: -94.70 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.67 Total: 47.47 kcal Total: -65.59 2.15 -63.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138611430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.064 kcal (2) G-P(sol) polarization free energy of solvation -65.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds