Wall clock time and date at job start Tue Mar 31 2020 11:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00285 * 2 1 4 4 H 1.48495 * 109.47246 * 240.00073 * 3 2 1 5 5 H 1.48501 * 109.46878 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46785 * 119.99997 * 3 2 1 7 7 C 1.37876 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99998 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.53718 * 300.09981 * 9 7 2 11 11 C 1.53118 * 109.50398 * 60.19888 * 9 7 2 12 12 C 1.53113 * 109.16282 * 177.59486 * 11 9 7 13 13 C 1.53041 * 109.27713 * 302.34488 * 12 11 9 14 14 N 1.46843 * 109.52198 * 59.18030 * 13 12 11 15 15 C 1.46905 * 110.99864 * 174.16021 * 14 13 12 16 16 C 1.50699 * 109.47152 * 296.46798 * 15 14 13 17 17 C 1.38131 * 120.03653 * 266.78786 * 16 15 14 18 18 C 1.38268 * 120.07307 * 179.76803 * 17 16 15 19 19 C 1.38307 * 120.14761 * 0.50672 * 18 17 16 20 20 C 1.38083 * 120.07872 * 359.74611 * 19 18 17 21 21 C 1.38888 * 120.03772 * 87.06090 * 16 15 14 22 22 N 1.39672 * 120.07896 * 0.02562 * 21 16 15 23 23 C 1.48529 * 111.00078 * 116.14356 * 22 21 16 24 24 C 1.54937 * 103.22623 * 159.72380 * 23 22 21 25 25 C 1.54597 * 102.92219 * 322.58925 * 24 23 22 26 26 C 1.47897 * 111.00233 * 233.54396 * 22 21 16 27 27 C 1.46848 * 111.19748 * 298.25634 * 14 13 12 28 28 H 0.97006 * 119.99410 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.52109 * 297.50259 * 11 9 7 30 30 H 1.09006 * 109.52340 * 57.62212 * 11 9 7 31 31 H 1.09001 * 109.50539 * 62.28863 * 12 11 9 32 32 H 1.09005 * 109.50590 * 182.36419 * 12 11 9 33 33 H 1.08992 * 109.46300 * 299.15970 * 13 12 11 34 34 H 1.09007 * 109.45922 * 179.19461 * 13 12 11 35 35 H 1.08995 * 109.46971 * 176.46409 * 15 14 13 36 36 H 1.08996 * 109.47051 * 56.46307 * 15 14 13 37 37 H 1.07997 * 119.95781 * 0.02562 * 17 16 15 38 38 H 1.07996 * 119.92451 * 180.27290 * 18 17 16 39 39 H 1.07997 * 119.96080 * 179.72327 * 19 18 17 40 40 H 1.07998 * 120.03743 * 180.02562 * 20 19 18 41 41 H 1.09001 * 110.66967 * 278.15717 * 23 22 21 42 42 H 1.08996 * 110.66927 * 41.29339 * 23 22 21 43 43 H 1.08992 * 110.72648 * 204.22606 * 24 23 22 44 44 H 1.09000 * 110.72522 * 80.94215 * 24 23 22 45 45 H 1.09003 * 110.30477 * 263.04138 * 25 24 23 46 46 H 1.08999 * 110.31289 * 140.87293 * 25 24 23 47 47 H 1.09007 * 109.91708 * 333.50815 * 26 22 21 48 48 H 1.08998 * 109.91969 * 94.60055 * 26 22 21 49 49 H 1.08999 * 109.46017 * 181.76413 * 27 14 13 50 50 H 1.09001 * 109.46102 * 301.72950 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6228 -2.5574 0.8884 11 6 0.3736 -2.5829 -1.2527 12 6 -0.3421 -3.9363 -1.2753 13 6 0.6979 -5.0584 -1.2390 14 7 1.5110 -4.9348 -0.0224 15 6 2.4281 -6.0740 0.1159 16 6 1.6318 -7.3428 0.2807 17 6 1.3304 -7.8106 1.5449 18 6 0.5958 -8.9721 1.6970 19 6 0.1693 -9.6749 0.5848 20 6 0.4715 -9.2156 -0.6819 21 6 1.2051 -8.0461 -0.8383 22 7 1.5134 -7.5793 -2.1181 23 6 2.3906 -8.5380 -2.8374 24 6 2.1920 -8.1529 -4.3250 25 6 0.6895 -7.7951 -4.3918 26 6 0.2932 -7.4515 -2.9440 27 6 2.2447 -3.6629 -0.0012 28 1 -0.4849 0.8401 0.0004 29 1 -0.3643 -1.7808 -1.2347 30 1 0.9969 -2.4844 -2.1415 31 1 -0.9952 -4.0172 -0.4064 32 1 -0.9357 -4.0189 -2.1858 33 1 1.3419 -4.9852 -2.1152 34 1 0.1911 -6.0235 -1.2406 35 1 3.0616 -5.9263 0.9905 36 1 3.0510 -6.1493 -0.7754 37 1 1.6654 -7.2663 2.4155 38 1 0.3577 -9.3333 2.6865 39 1 -0.4005 -10.5841 0.7071 40 1 0.1378 -9.7647 -1.5499 41 1 3.4310 -8.4045 -2.5411 42 1 2.0673 -9.5636 -2.6592 43 1 2.4165 -8.9981 -4.9755 44 1 2.8057 -7.2906 -4.5855 45 1 0.1130 -8.6482 -4.7495 46 1 0.5342 -6.9335 -5.0412 47 1 -0.4680 -8.1479 -2.5921 48 1 -0.0853 -6.4306 -2.8918 49 1 2.8614 -3.6144 0.8963 50 1 2.8815 -3.5962 -0.8833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138611431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:15 Heat of formation + Delta-G solvation = 42.233025 kcal Electronic energy + Delta-G solvation = -27599.373391 eV Core-core repulsion = 24205.148267 eV Total energy + Delta-G solvation = -3394.225124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60177 -37.99152 -37.58586 -33.97427 -32.61551 -32.12917 -30.51374 -29.78454 -28.89012 -28.47622 -25.48429 -24.83375 -23.26995 -22.29724 -21.52829 -21.12221 -20.48074 -20.25242 -18.44832 -17.22863 -16.34003 -16.18226 -15.63875 -15.12116 -15.00347 -14.54868 -14.31193 -13.93098 -13.80466 -13.47070 -13.26527 -13.04293 -12.94871 -12.56062 -12.34883 -12.23224 -12.14117 -11.83458 -11.75709 -11.40369 -11.31270 -11.24870 -11.09685 -10.87702 -10.84810 -10.72695 -10.58634 -10.41813 -9.91134 -9.70508 -9.35946 -8.97303 -8.72857 -8.61847 -8.60105 -8.43065 -8.21111 -7.40285 -5.89893 -3.95780 1.31874 1.44299 3.36688 3.41115 3.43700 3.72723 3.83579 4.48654 4.52073 4.66190 4.81285 4.86473 4.90752 4.99907 5.08355 5.13296 5.34237 5.39509 5.40169 5.44203 5.61297 5.64069 5.67426 5.73405 5.82877 5.90333 5.92424 5.95041 6.03528 6.05427 6.12043 6.22363 6.28959 6.45311 6.50207 6.51221 6.55702 6.67544 6.68470 6.69774 6.89576 6.91057 6.93788 7.10895 7.34900 7.42463 7.52716 7.82780 7.88462 8.00615 8.19408 8.27715 8.57961 9.08391 9.67915 11.15938 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.003799 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.468441 B = 7367.661162 C = 8191.949225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.032 0.968 11 C -0.108 4.108 12 C -0.121 4.121 13 C 0.068 3.932 14 N -0.531 5.531 15 C 0.099 3.901 16 C -0.041 4.041 17 C -0.097 4.097 18 C -0.124 4.124 19 C -0.119 4.119 20 C -0.154 4.154 21 C 0.084 3.916 22 N -0.475 5.475 23 C 0.039 3.961 24 C -0.122 4.122 25 C -0.130 4.130 26 C 0.027 3.973 27 C 0.069 3.931 28 H 0.259 0.741 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.049 0.951 48 H 0.095 0.905 49 H 0.055 0.945 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -20.809 -4.637 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.038 3.962 10 H 0.051 0.949 11 C -0.146 4.146 12 C -0.159 4.159 13 C -0.060 4.060 14 N -0.255 5.255 15 C -0.029 4.029 16 C -0.042 4.042 17 C -0.116 4.116 18 C -0.142 4.142 19 C -0.138 4.138 20 C -0.174 4.174 21 C -0.010 4.010 22 N -0.196 5.196 23 C -0.087 4.087 24 C -0.161 4.161 25 C -0.168 4.168 26 C -0.099 4.099 27 C -0.058 4.058 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.067 0.933 48 H 0.113 0.887 49 H 0.074 0.926 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.010 -20.151 -4.192 20.607 hybrid contribution 0.499 0.110 -0.758 0.914 sum 1.509 -20.041 -4.949 20.698 Atomic orbital electron populations 1.69897 1.05817 1.26270 1.50784 1.24924 0.94796 0.98834 0.95243 0.86714 0.79623 0.83440 0.78510 1.20425 1.21378 1.20350 1.21132 0.92757 0.90767 1.50544 0.92975 1.18637 0.92617 0.90211 0.94770 0.94944 1.21611 0.99881 0.94689 0.98402 1.21738 0.97542 0.97055 0.99596 1.22300 0.95257 0.98213 0.90206 1.62069 1.23653 1.01358 1.38447 1.20866 0.93341 0.87967 1.00720 1.19795 0.97486 0.95513 0.91453 1.21056 0.97911 0.95707 0.96887 1.21132 0.98789 0.95800 0.98498 1.20915 1.00549 0.99930 0.92384 1.21502 1.01078 0.97181 0.97612 1.18809 0.98294 0.93235 0.90674 1.62494 1.13768 1.43579 0.99773 1.23309 0.98249 0.93870 0.93263 1.22477 0.96489 1.01590 0.95494 1.22398 0.96240 1.01609 0.96595 1.23231 0.91447 1.03269 0.91920 1.22281 0.96381 0.88591 0.98503 0.93112 0.89440 0.95314 0.92603 0.94078 0.95211 0.91513 0.91182 0.93562 0.85570 0.86233 0.86570 0.86711 0.90017 0.93522 0.91150 0.90516 0.91685 0.90715 0.93283 0.88678 0.92623 0.96424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 11.36 55.43 0.63 -25.18 16 2 C 0.06 1.77 5.31 -17.82 -0.09 1.68 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.35 8.56 -34.44 -0.29 -14.64 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.06 1.45 2.26 -91.69 -0.21 1.25 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.64 5.03 -26.61 -0.13 -2.77 16 12 C -0.12 -2.51 6.09 -26.65 -0.16 -2.67 16 13 C 0.07 1.26 2.82 -3.83 -0.01 1.25 16 14 N -0.53 -10.30 4.67 -236.12 -1.10 -11.40 16 15 C 0.10 1.62 4.96 -4.97 -0.02 1.59 16 16 C -0.04 -0.60 4.92 -104.42 -0.51 -1.12 16 17 C -0.10 -1.28 9.68 -39.61 -0.38 -1.67 16 18 C -0.12 -1.43 10.04 -39.55 -0.40 -1.83 16 19 C -0.12 -1.32 10.04 -39.61 -0.40 -1.71 16 20 C -0.15 -1.82 7.91 -39.38 -0.31 -2.13 16 21 C 0.08 1.14 3.71 -83.79 -0.31 0.82 16 22 N -0.47 -6.06 2.90 -167.17 -0.48 -6.54 16 23 C 0.04 0.41 6.43 -1.90 -0.01 0.40 16 24 C -0.12 -1.12 7.06 -24.87 -0.18 -1.30 16 25 C -0.13 -1.24 6.93 -25.38 -0.18 -1.41 16 26 C 0.03 0.32 5.35 -2.76 -0.01 0.31 16 27 C 0.07 1.53 4.69 -3.83 -0.02 1.51 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.09 2.38 6.16 -51.93 -0.32 2.06 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.58 7.76 -51.93 -0.40 0.17 16 34 H 0.07 1.16 3.50 -51.92 -0.18 0.98 16 35 H 0.07 1.09 7.95 -51.93 -0.41 0.68 16 36 H 0.05 0.77 7.55 -51.93 -0.39 0.38 16 37 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.11 1.19 7.03 -52.49 -0.37 0.82 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.46 7.07 -51.93 -0.37 0.09 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.05 0.56 6.26 -51.92 -0.32 0.23 16 48 H 0.10 1.29 5.63 -51.93 -0.29 0.99 16 49 H 0.06 1.20 8.04 -51.93 -0.42 0.79 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -29.29 370.18 -12.56 -41.85 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.52 Total: 1.58 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -3.64 Total: -22.44 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.96 Total: -43.12 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.29 -12.56 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138611431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.085 kcal (2) G-P(sol) polarization free energy of solvation -29.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds